RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 USP47Q96K76 1375 aa14.21□□□□□ -0.13
SYNPO-202ENST00000394243 ANKRD30AQ9BXX3 1397 aa14.21□□□□□ -0.13
SYNPO-202ENST00000394243 EIF3JO75822 258 aaKnown RBP14.21□□□□□ -0.13
SYNPO-202ENST00000394243 C9orf78Q9NZ63 289 aaPredicted RBP14.21□□□□□ -0.13
SYNPO-202ENST00000394243 MYO6Q9UM54 1294 aa14.2□□□□□ -0.14
SYNPO-202ENST00000394243 OFD1O75665 1012 aa14.2□□□□□ -0.14
SYNPO-202ENST00000394243 FAM177A1Q8N128 213 aaPredicted RBP14.2□□□□□ -0.14
SYNPO-202ENST00000394243 NEK4P51957 841 aa14.2□□□□□ -0.14
SYNPO-202ENST00000394243 ROCK1Q13464 1354 aa14.2□□□□□ -0.14
SYNPO-202ENST00000394243 SAFBQ15424 915 aaKnown RBP eCLIP14.2□□□□□ -0.14
SYNPO-202ENST00000394243 ZSCAN30Q86W11 494 aa14.2□□□□□ -0.14
SYNPO-202ENST00000394243 ZHX1Q9UKY1 873 aaPredicted RBP14.2□□□□□ -0.14
SYNPO-202ENST00000394243 PDCL3Q9H2J4 239 aa14.2□□□□□ -0.14
SYNPO-202ENST00000394243 SMARCE1Q969G3 411 aa14.2□□□□□ -0.14
SYNPO-202ENST00000394243 CGNQ9P2M7 1197 aaKnown RBP14.2□□□□□ -0.14
SYNPO-202ENST00000394243 MSH5O43196 834 aa14.19□□□□□ -0.14
SYNPO-202ENST00000394243 CCDC192P0DO97 292 aa14.19□□□□□ -0.14
SYNPO-202ENST00000394243 BRPF1P55201 1214 aaPredicted RBP14.19□□□□□ -0.14
SYNPO-202ENST00000394243 NECTIN2Q92692 538 aa14.19□□□□□ -0.14
SYNPO-202ENST00000394243 MCM4P33991 863 aa14.19□□□□□ -0.14
SYNPO-202ENST00000394243 GIMAP7Q8NHV1 300 aa14.19□□□□□ -0.14
SYNPO-202ENST00000394243 GOLGA6L10A6NI86 522 aa14.18□□□□□ -0.14
SYNPO-202ENST00000394243 TRAK1Q9UPV9 953 aa14.18□□□□□ -0.14
SYNPO-202ENST00000394243 GOLGA6L7A0A1B0GV03 622 aa14.18□□□□□ -0.14
SYNPO-202ENST00000394243 ERLIN1O75477 346 aa14.18□□□□□ -0.14
SYNPO-202ENST00000394243 AAMPQ13685 434 aa14.18□□□□□ -0.14
SYNPO-202ENST00000394243 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.18□□□□□ -0.14
SYNPO-202ENST00000394243 RIPK4P57078 832 aa14.18□□□□□ -0.14
SYNPO-202ENST00000394243 FAM193AP78312 1265 aa14.18□□□□□ -0.14
SYNPO-202ENST00000394243 PDZRN3Q9UPQ7 1066 aa14.18□□□□□ -0.14
SYNPO-202ENST00000394243 ODF2Q5BJF6 829 aa14.18□□□□□ -0.14
SYNPO-202ENST00000394243 TRERF1Q96PN7 1200 aa14.17□□□□□ -0.14
SYNPO-202ENST00000394243 TMX4Q9H1E5 349 aaPredicted RBP14.17□□□□□ -0.14
SYNPO-202ENST00000394243 RABEP1Q15276 862 aa14.17□□□□□ -0.14
SYNPO-202ENST00000394243 EPS15P42566 896 aa14.17□□□□□ -0.14
SYNPO-202ENST00000394243 FILIP1LQ4L180 1135 aa14.17□□□□□ -0.14
SYNPO-202ENST00000394243 NUTM2DQ5VT03 806 aaPredicted RBP14.17□□□□□ -0.14
SYNPO-202ENST00000394243 EIF2S2P20042 333 aaKnown RBP14.17□□□□□ -0.14
SYNPO-202ENST00000394243 DYDC1Q8WWB3 177 aa14.16□□□□□ -0.14
SYNPO-202ENST00000394243 G3V3G9 751 aa14.16□□□□□ -0.14
SYNPO-202ENST00000394243 DCAF8Q5TAQ9 597 aa14.16□□□□□ -0.14
SYNPO-202ENST00000394243 SERPINC1P01008 464 aa14.16□□□□□ -0.14
SYNPO-202ENST00000394243 CEBPZQ03701 1054 aaKnown RBP14.16□□□□□ -0.14
SYNPO-202ENST00000394243 CCDC102AQ96A19 550 aa14.16□□□□□ -0.14
SYNPO-202ENST00000394243 NGEFQ8N5V2 710 aa14.16□□□□□ -0.14
SYNPO-202ENST00000394243 MCM2P49736 904 aa14.16□□□□□ -0.14
SYNPO-202ENST00000394243 CUX2O14529 1486 aa14.16□□□□□ -0.14
SYNPO-202ENST00000394243 GPATCH11Q8N954 259 aa14.15□□□□□ -0.14
SYNPO-202ENST00000394243 ERC2O15083 957 aa14.15□□□□□ -0.14
SYNPO-202ENST00000394243 G3BP1Q13283 466 aaKnown RBP eCLIP14.15□□□□□ -0.14
SYNPO-202ENST00000394243 ZFYVE27Q5T4F4 411 aa14.15□□□□□ -0.14
SYNPO-202ENST00000394243 TNMDQ9H2S6 317 aa14.15□□□□□ -0.14
SYNPO-202ENST00000394243 ERICH2A1L162 156 aa14.15□□□□□ -0.14
SYNPO-202ENST00000394243 RUNDC1Q96C34 613 aa14.15□□□□□ -0.14
SYNPO-202ENST00000394243 CWC22Q9HCG8 908 aaKnown RBP14.15□□□□□ -0.14
SYNPO-202ENST00000394243 ZRSR2Q15696 482 aaKnown RBP14.15□□□□□ -0.14
SYNPO-202ENST00000394243 CDCA7LQ96GN5 454 aa14.15□□□□□ -0.14
SYNPO-202ENST00000394243 KDM4AO75164 1064 aa14.14□□□□□ -0.15
SYNPO-202ENST00000394243 ABCC8Q09428 1581 aa14.14□□□□□ -0.15
SYNPO-202ENST00000394243 PSMA5P28066 241 aa14.14□□□□□ -0.15
SYNPO-202ENST00000394243 K7ELQ4 463 aaPredicted RBP14.14□□□□□ -0.15
SYNPO-202ENST00000394243 CALCOCO1Q9P1Z2 691 aa14.14□□□□□ -0.15
SYNPO-202ENST00000394243 AKNAQ7Z591 1439 aa14.14□□□□□ -0.15
SYNPO-202ENST00000394243 RAD21O60216 631 aa14.14□□□□□ -0.15
SYNPO-202ENST00000394243 NEXNQ0ZGT2 675 aa14.14□□□□□ -0.15
SYNPO-202ENST00000394243 TCEAL9Q9UHQ7 104 aa14.14□□□□□ -0.15
SYNPO-202ENST00000394243 FKBP5Q13451 457 aaPredicted RBP14.13□□□□□ -0.15
SYNPO-202ENST00000394243 KIF7Q2M1P5 1343 aa14.13□□□□□ -0.15
SYNPO-202ENST00000394243 DHX16O60231 1041 aaKnown RBP14.13□□□□□ -0.15
SYNPO-202ENST00000394243 NEFHP12036 1026 aa14.13□□□□□ -0.15
SYNPO-202ENST00000394243 IBSPP21815 317 aaPredicted RBP14.13□□□□□ -0.15
SYNPO-202ENST00000394243 LRRCC1Q9C099 1032 aa14.13□□□□□ -0.15
SYNPO-202ENST00000394243 PDCP20941 246 aa14.13□□□□□ -0.15
SYNPO-202ENST00000394243 NGDNQ8NEJ9 315 aaKnown RBP14.13□□□□□ -0.15
SYNPO-202ENST00000394243 RALYLQ86SE5 291 aaKnown RBP14.12□□□□□ -0.15
SYNPO-202ENST00000394243 INCENPQ9NQS7 918 aa14.12□□□□□ -0.15
SYNPO-202ENST00000394243 ERLIN2O94905 339 aa14.12□□□□□ -0.15
SYNPO-202ENST00000394243 TRIM34Q9BYJ4 488 aa14.12□□□□□ -0.15
SYNPO-202ENST00000394243 CNTLNQ9NXG0 1405 aa14.12□□□□□ -0.15
SYNPO-202ENST00000394243 GTF2E1P29083 439 aaPredicted RBP14.12□□□□□ -0.15
SYNPO-202ENST00000394243 CCDC7Q96M83 1385 aa14.12□□□□□ -0.15
SYNPO-202ENST00000394243 DHX8Q14562 1220 aaKnown RBP14.12□□□□□ -0.15
SYNPO-202ENST00000394243 UBXN4Q92575 508 aa14.12□□□□□ -0.15
SYNPO-202ENST00000394243 TMCO3Q6UWJ1 677 aa14.11□□□□□ -0.15
SYNPO-202ENST00000394243 CCDC181Q5TID7 509 aa14.11□□□□□ -0.15
SYNPO-202ENST00000394243 AEBP2Q6ZN18 517 aaPredicted RBP14.11□□□□□ -0.15
SYNPO-202ENST00000394243 NINLQ9Y2I6 1382 aa14.11□□□□□ -0.15
SYNPO-202ENST00000394243 XPCQ01831 940 aaPredicted RBP14.11□□□□□ -0.15
SYNPO-202ENST00000394243 ENOX2Q16206 610 aaKnown RBP14.11□□□□□ -0.15
SYNPO-202ENST00000394243 PPFIBP1Q86W92 1011 aa14.11□□□□□ -0.15
SYNPO-202ENST00000394243 NUTM2FA1L443 756 aa14.11□□□□□ -0.15
SYNPO-202ENST00000394243 CNTROBQ8N137 903 aa14.11□□□□□ -0.15
SYNPO-202ENST00000394243 MAGEC2Q9UBF1 373 aaPredicted RBP14.11□□□□□ -0.15
SYNPO-202ENST00000394243 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.1□□□□□ -0.152e-9■■■■■ 223.6
SYNPO-202ENST00000394243 RBM25P49756 843 aaKnown RBP14.1□□□□□ -0.15
SYNPO-202ENST00000394243 IPO4Q8TEX9 1081 aaKnown RBP14.1□□□□□ -0.15
SYNPO-202ENST00000394243 TAX1BP1Q86VP1 789 aa14.1□□□□□ -0.15
SYNPO-202ENST00000394243 ZNF396Q96N95 335 aaPredicted RBP14.1□□□□□ -0.15
SYNPO-202ENST00000394243 DIAPH1O60610 1272 aaKnown RBP14.1□□□□□ -0.15
SYNPO-202ENST00000394243 AMOTL1Q8IY63 956 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms