RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SAFB2Q14151 953 aaKnown RBP eCLIP33.81■■■■□ 3
SHOX2-201ENST00000389589 ABCC11Q96J66 1382 aa33.79■■■■□ 3
SHOX2-201ENST00000389589 SMG6Q86US8 1419 aaKnown RBP33.79■■■■□ 3
SHOX2-201ENST00000389589 ANKRD36BQ8N2N9 1353 aa33.79■■■■□ 3
SHOX2-201ENST00000389589 BLMP54132 1417 aaPredicted RBP33.78■■■■□ 3
SHOX2-201ENST00000389589 KNDC1Q76NI1 1749 aa33.77■■■■□ 3
SHOX2-201ENST00000389589 ATAD2Q6PL18 1390 aa33.77■■■■□ 3
SHOX2-201ENST00000389589 CABP2Q9NPB3 220 aa33.76■■■■□ 3
SHOX2-201ENST00000389589 MINK1Q8N4C8 1332 aaPredicted RBP33.74■■■□□ 2.99
SHOX2-201ENST00000389589 SRPK2P78362 688 aaKnown RBP33.74■■■□□ 2.99
SHOX2-201ENST00000389589 CEBPAP49715 358 aaPredicted RBP33.72■■■□□ 2.99
SHOX2-201ENST00000389589 CGNL1Q0VF96 1302 aa33.71■■■□□ 2.99
SHOX2-201ENST00000389589 NUDCQ9Y266 331 aa33.7■■■□□ 2.98
SHOX2-201ENST00000389589 NSD2O96028 1365 aa33.69■■■□□ 2.98
SHOX2-201ENST00000389589 METP08581 1390 aa33.68■■■□□ 2.98
SHOX2-201ENST00000389589 WDR43Q15061 677 aaKnown RBP eCLIP33.68■■■□□ 2.98
SHOX2-201ENST00000389589 SIRT1Q96EB6 747 aa33.67■■■□□ 2.98
SHOX2-201ENST00000389589 TECPR2O15040 1411 aa33.67■■■□□ 2.98
SHOX2-201ENST00000389589 PLEKHG1Q9ULL1 1385 aa33.66■■■□□ 2.98
SHOX2-201ENST00000389589 SLIT1O75093 1534 aa33.65■■■□□ 2.98
SHOX2-201ENST00000389589 FAM135BQ49AJ0 1406 aa33.65■■■□□ 2.98
SHOX2-201ENST00000389589 CPS1P31327 1500 aa33.64■■■□□ 2.98
SHOX2-201ENST00000389589 MORC1Q86VD1 984 aa33.64■■■□□ 2.98
SHOX2-201ENST00000389589 CDK19Q9BWU1 502 aa33.64■■■□□ 2.98
SHOX2-201ENST00000389589 ADAMTS8Q9UP79 889 aa33.63■■■□□ 2.97
SHOX2-201ENST00000389589 PDE3BQ13370 1112 aa33.62■■■□□ 2.97
SHOX2-201ENST00000389589 BCANQ96GW7 911 aa33.62■■■□□ 2.97
SHOX2-201ENST00000389589 TERF2IPQ9NYB0 399 aa33.62■■■□□ 2.97
SHOX2-201ENST00000389589 ARHGAP23Q9P227 1491 aa33.62■■■□□ 2.97
SHOX2-201ENST00000389589 WAPLQ7Z5K2 1190 aa33.61■■■□□ 2.97
SHOX2-201ENST00000389589 A0A1W2PP64 1363 aa33.61■■■□□ 2.97
SHOX2-201ENST00000389589 ADAMTS13Q76LX8 1427 aa33.6■■■□□ 2.97
SHOX2-201ENST00000389589 PLEKHH1Q9ULM0 1364 aa33.6■■■□□ 2.97
SHOX2-201ENST00000389589 EID1Q9Y6B2 187 aa33.6■■■□□ 2.97
SHOX2-201ENST00000389589 POLR3AO14802 1390 aaPredicted RBP33.59■■■□□ 2.97
SHOX2-201ENST00000389589 ERICH6BQ5W0A0 696 aa33.57■■■□□ 2.96
SHOX2-201ENST00000389589 TXNDC2Q86VQ3 553 aa33.57■■■□□ 2.96
SHOX2-201ENST00000389589 ANKRD26Q9UPS8 1709 aa33.56■■■□□ 2.96
SHOX2-201ENST00000389589 LTKP29376 864 aa33.56■■■□□ 2.96
SHOX2-201ENST00000389589 CD163L1Q9NR16 1453 aa33.56■■■□□ 2.96
SHOX2-201ENST00000389589 SENP3-EIF4A1A0A087X0R7 540 aa33.55■■■□□ 2.96
SHOX2-201ENST00000389589 RIMS1Q86UR5 1692 aaKnown RBP33.55■■■□□ 2.96
SHOX2-201ENST00000389589 THEMISQ8N1K5 641 aaPredicted RBP33.54■■■□□ 2.96
SHOX2-201ENST00000389589 HDGFL2Q7Z4V5 671 aaPredicted RBP33.54■■■□□ 2.96
SHOX2-201ENST00000389589 MED14O60244 1454 aa33.54■■■□□ 2.96
SHOX2-201ENST00000389589 PELP1Q8IZL8 1130 aaKnown RBP33.53■■■□□ 2.96
SHOX2-201ENST00000389589 ATP7BP35670 1465 aa33.52■■■□□ 2.96
SHOX2-201ENST00000389589 PLPPR3Q6T4P5 718 aa33.5■■■□□ 2.95
SHOX2-201ENST00000389589 WASLO00401 505 aaPredicted RBP33.49■■■□□ 2.95
SHOX2-201ENST00000389589 KIF20BQ96Q89 1820 aa33.48■■■□□ 2.95
SHOX2-201ENST00000389589 SALL2Q9Y467 1007 aaPredicted RBP33.48■■■□□ 2.95
SHOX2-201ENST00000389589 DIP2AQ14689 1571 aa33.48■■■□□ 2.95
SHOX2-201ENST00000389589 CABP1Q9NZU7 370 aa33.47■■■□□ 2.95
SHOX2-201ENST00000389589 ADAMTSL3P82987 1691 aa33.46■■■□□ 2.95
SHOX2-201ENST00000389589 SHPRHQ149N8 1683 aa33.46■■■□□ 2.95
SHOX2-201ENST00000389589 CEP170BQ9Y4F5 1589 aaPredicted RBP33.46■■■□□ 2.95
SHOX2-201ENST00000389589 ADGRB2O60241 1585 aa33.44■■■□□ 2.94
SHOX2-201ENST00000389589 RNF123Q5XPI4 1314 aa33.44■■■□□ 2.94
SHOX2-201ENST00000389589 TNNT2P45379 298 aaPredicted RBP33.43■■■□□ 2.94
SHOX2-201ENST00000389589 ROBO2Q9HCK4 1378 aa33.42■■■□□ 2.94
SHOX2-201ENST00000389589 CFAP53Q96M91 514 aa33.42■■■□□ 2.94
SHOX2-201ENST00000389589 TBX22Q9Y458 520 aa33.42■■■□□ 2.94
SHOX2-201ENST00000389589 IRX6P78412 446 aaPredicted RBP33.4■■■□□ 2.94
SHOX2-201ENST00000389589 MTHFSP49914 203 aa33.39■■■□□ 2.94
SHOX2-201ENST00000389589 FYB1O15117 783 aa33.38■■■□□ 2.93
SHOX2-201ENST00000389589 ZNF142P52746 1687 aaPredicted RBP33.38■■■□□ 2.93
SHOX2-201ENST00000389589 NGEFQ8N5V2 710 aa33.38■■■□□ 2.93
SHOX2-201ENST00000389589 PPIP5K1Q6PFW1 1433 aa33.38■■■□□ 2.93
SHOX2-201ENST00000389589 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.37■■■□□ 2.93
SHOX2-201ENST00000389589 SLC26A8Q96RN1 970 aa33.37■■■□□ 2.93
SHOX2-201ENST00000389589 SETD1BQ9UPS6 1966 aaKnown RBP33.36■■■□□ 2.93
SHOX2-201ENST00000389589 CPSF1Q10570 1443 aaKnown RBP33.36■■■□□ 2.93
SHOX2-201ENST00000389589 PTPRUQ92729 1446 aa33.36■■■□□ 2.93
SHOX2-201ENST00000389589 CDC42BPGQ6DT37 1551 aa33.35■■■□□ 2.93
SHOX2-201ENST00000389589 NUDT16Q96DE0 195 aaKnown RBP33.35■■■□□ 2.93
SHOX2-201ENST00000389589 GGNBP2Q9H3C7 697 aa33.35■■■□□ 2.93
SHOX2-201ENST00000389589 ITSN1Q15811 1721 aa33.34■■■□□ 2.93
SHOX2-201ENST00000389589 AKAP12Q02952 1782 aa33.33■■■□□ 2.93
SHOX2-201ENST00000389589 CDCA7LQ96GN5 454 aa33.33■■■□□ 2.93
SHOX2-201ENST00000389589 CCDC61Q9Y6R9 512 aa33.33■■■□□ 2.93
SHOX2-201ENST00000389589 MON2Q7Z3U7 1717 aa33.33■■■□□ 2.93
SHOX2-201ENST00000389589 PTCH1Q13635 1447 aa33.32■■■□□ 2.92
SHOX2-201ENST00000389589 ZNF521Q96K83 1311 aa33.32■■■□□ 2.92
SHOX2-201ENST00000389589 EDC4Q6P2E9 1401 aaKnown RBP33.31■■■□□ 2.92
SHOX2-201ENST00000389589 CCDC146Q8IYE0 955 aa33.31■■■□□ 2.92
SHOX2-201ENST00000389589 PPP4R2Q9NY27 417 aa33.3■■■□□ 2.92
SHOX2-201ENST00000389589 RCAN3Q9UKA8 241 aa33.29■■■□□ 2.92
SHOX2-201ENST00000389589 AMOTL2Q9Y2J4 779 aa33.29■■■□□ 2.92
SHOX2-201ENST00000389589 XRN1Q8IZH2 1706 aaKnown RBP33.28■■■□□ 2.92
SHOX2-201ENST00000389589 TOPAZ1Q8N9V7 1692 aa33.27■■■□□ 2.92
SHOX2-201ENST00000389589 APAF1O14727 1248 aa33.27■■■□□ 2.92
SHOX2-201ENST00000389589 PIK3R4Q99570 1358 aa33.26■■■□□ 2.91
SHOX2-201ENST00000389589 GOLGA2Q08379 1002 aa33.25■■■□□ 2.91
SHOX2-201ENST00000389589 ZNF692Q9BU19 519 aaPredicted RBP33.23■■■□□ 2.91
SHOX2-201ENST00000389589 RUNDC1Q96C34 613 aa33.22■■■□□ 2.91
SHOX2-201ENST00000389589 PRR36Q9H6K5 1346 aa33.21■■■□□ 2.91
SHOX2-201ENST00000389589 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.21■■■□□ 2.91
SHOX2-201ENST00000389589 COL3A1P02461 1466 aaPredicted RBP33.21■■■□□ 2.91
SHOX2-201ENST00000389589 ANKLE2Q86XL3 938 aa33.18■■■□□ 2.9
SHOX2-201ENST00000389589 RRP1P56182 461 aaKnown RBP33.17■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms