RNA–Protein interactions for RNA: ENST00000379340.9

POLR2J3-201, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-201ENST00000379340 ERVK-7P63135 1459 aa14.11□□□□□ -0.15
POLR2J3-201ENST00000379340 NLRP1Q9C000 1473 aa14.11□□□□□ -0.15
POLR2J3-201ENST00000379340 ASXL1Q8IXJ9 1541 aa14.11□□□□□ -0.15
POLR2J3-201ENST00000379340 CHGAP10645 457 aaKnown RBP14.11□□□□□ -0.15
POLR2J3-201ENST00000379340 CNGB1Q14028 1251 aaPredicted RBP14.1□□□□□ -0.15
POLR2J3-201ENST00000379340 VGFO15240 615 aaPredicted RBP14.09□□□□□ -0.15
POLR2J3-201ENST00000379340 KNSTRNQ9Y448 316 aa14.09□□□□□ -0.15
POLR2J3-201ENST00000379340 QRICH2Q9H0J4 1663 aa14.09□□□□□ -0.15
POLR2J3-201ENST00000379340 XIRP1Q702N8 1843 aaKnown RBP14.08□□□□□ -0.16
POLR2J3-201ENST00000379340 TMEM131LA2VDJ0 1609 aa14.08□□□□□ -0.16
POLR2J3-201ENST00000379340 CENPJQ9HC77 1338 aaPredicted RBP14.08□□□□□ -0.16
POLR2J3-201ENST00000379340 NUDCQ9Y266 331 aa14.07□□□□□ -0.16
POLR2J3-201ENST00000379340 CC2D1BQ5T0F9 858 aaKnown RBP14.06□□□□□ -0.16
POLR2J3-201ENST00000379340 ARHGEF28Q8N1W1 1705 aaKnown RBP14.06□□□□□ -0.16
POLR2J3-201ENST00000379340 BLMP54132 1417 aaPredicted RBP14.05□□□□□ -0.16
POLR2J3-201ENST00000379340 SETD1AO15047 1707 aaKnown RBP14.05□□□□□ -0.16
POLR2J3-201ENST00000379340 LTKP29376 864 aa14.05□□□□□ -0.16
POLR2J3-201ENST00000379340 AMER1Q5JTC6 1135 aaPredicted RBP14.05□□□□□ -0.16
POLR2J3-201ENST00000379340 PUS7Q96PZ0 661 aaKnown RBP14.05□□□□□ -0.16
POLR2J3-201ENST00000379340 MYO5BQ9ULV0 1848 aa14.04□□□□□ -0.16
POLR2J3-201ENST00000379340 PDE3BQ13370 1112 aa14.04□□□□□ -0.16
POLR2J3-201ENST00000379340 IDI1Q13907 227 aa14.03□□□□□ -0.16
POLR2J3-201ENST00000379340 BCANQ96GW7 911 aa14.03□□□□□ -0.16
POLR2J3-201ENST00000379340 UBR1Q8IWV7 1749 aa14.02□□□□□ -0.17
POLR2J3-201ENST00000379340 USP32Q8NFA0 1604 aa14.02□□□□□ -0.17
POLR2J3-201ENST00000379340 PPP2R1AP30153 589 aa14□□□□□ -0.17
POLR2J3-201ENST00000379340 RBM33Q96EV2 1170 aaKnown RBP14□□□□□ -0.17
POLR2J3-201ENST00000379340 FAM135BQ49AJ0 1406 aa13.99□□□□□ -0.17
POLR2J3-201ENST00000379340 RNF123Q5XPI4 1314 aa13.99□□□□□ -0.17
POLR2J3-201ENST00000379340 TRAK1Q9UPV9 953 aa13.99□□□□□ -0.17
POLR2J3-201ENST00000379340 ARHGAP23Q9P227 1491 aa13.98□□□□□ -0.17
POLR2J3-201ENST00000379340 TXNDC2Q86VQ3 553 aa13.98□□□□□ -0.17
POLR2J3-201ENST00000379340 PPP4R2Q9NY27 417 aa13.98□□□□□ -0.17
POLR2J3-201ENST00000379340 TMEM94Q12767 1356 aa13.97□□□□□ -0.17
POLR2J3-201ENST00000379340 EVC2Q86UK5 1308 aa13.97□□□□□ -0.17
POLR2J3-201ENST00000379340 ROBO1Q9Y6N7 1651 aa13.96□□□□□ -0.17
POLR2J3-201ENST00000379340 SLIT1O75093 1534 aa13.96□□□□□ -0.17
POLR2J3-201ENST00000379340 NINLQ9Y2I6 1382 aa13.96□□□□□ -0.17
POLR2J3-201ENST00000379340 TULP4Q9NRJ4 1543 aa13.96□□□□□ -0.18
POLR2J3-201ENST00000379340 WDR43Q15061 677 aaKnown RBP eCLIP13.95□□□□□ -0.18
POLR2J3-201ENST00000379340 TMEM132EQ6IEE7 984 aa13.95□□□□□ -0.18
POLR2J3-201ENST00000379340 DLC1Q96QB1 1528 aa13.93□□□□□ -0.18
POLR2J3-201ENST00000379340 NSD2O96028 1365 aa13.92□□□□□ -0.18
POLR2J3-201ENST00000379340 NSD3Q9BZ95 1437 aa13.92□□□□□ -0.18
POLR2J3-201ENST00000379340 YTHDC2Q9H6S0 1430 aaKnown RBP13.92□□□□□ -0.18
POLR2J3-201ENST00000379340 IRX6P78412 446 aaPredicted RBP13.92□□□□□ -0.18
POLR2J3-201ENST00000379340 CARD14Q9BXL6 1004 aa13.92□□□□□ -0.18
POLR2J3-201ENST00000379340 STAG3Q9UJ98 1225 aa13.92□□□□□ -0.18
POLR2J3-201ENST00000379340 ANKRD36BQ8N2N9 1353 aa13.91□□□□□ -0.18
POLR2J3-201ENST00000379340 TSHZ2Q9NRE2 1034 aa13.91□□□□□ -0.18
POLR2J3-201ENST00000379340 POLR3AO14802 1390 aaPredicted RBP13.9□□□□□ -0.18
POLR2J3-201ENST00000379340 TMEM2Q9UHN6 1383 aa13.9□□□□□ -0.18
POLR2J3-201ENST00000379340 NUTM2DQ5VT03 806 aaPredicted RBP13.9□□□□□ -0.18
POLR2J3-201ENST00000379340 NGEFQ8N5V2 710 aa13.9□□□□□ -0.18
POLR2J3-201ENST00000379340 SLC26A8Q96RN1 970 aa13.9□□□□□ -0.18
POLR2J3-201ENST00000379340 RIMS2Q9UQ26 1411 aa13.9□□□□□ -0.18
POLR2J3-201ENST00000379340 ATAD2Q6PL18 1390 aa13.89□□□□□ -0.19
POLR2J3-201ENST00000379340 PROSER2Q86WR7 435 aaPredicted RBP13.89□□□□□ -0.19
POLR2J3-201ENST00000379340 UPF1Q92900 1129 aaKnown RBP eCLIP13.89□□□□□ -0.19
POLR2J3-201ENST00000379340 ADAMTS8Q9UP79 889 aa13.89□□□□□ -0.19
POLR2J3-201ENST00000379340 LRP6O75581 1613 aa13.88□□□□□ -0.19
POLR2J3-201ENST00000379340 KCNA6P17658 529 aa13.88□□□□□ -0.19
POLR2J3-201ENST00000379340 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.88□□□□□ -0.19
POLR2J3-201ENST00000379340 EID1Q9Y6B2 187 aa13.88□□□□□ -0.19
POLR2J3-201ENST00000379340 CGNL1Q0VF96 1302 aa13.88□□□□□ -0.19
POLR2J3-201ENST00000379340 PHLPP1O60346 1717 aa13.87□□□□□ -0.19
POLR2J3-201ENST00000379340 SLC12A5Q9H2X9 1139 aa13.87□□□□□ -0.19
POLR2J3-201ENST00000379340 HDGFP51858 240 aaKnown RBP13.86□□□□□ -0.19
POLR2J3-201ENST00000379340 RCAN3Q9UKA8 241 aa13.86□□□□□ -0.19
POLR2J3-201ENST00000379340 ANKRD26Q9UPS8 1709 aa13.86□□□□□ -0.19
POLR2J3-201ENST00000379340 KNDC1Q76NI1 1749 aa13.85□□□□□ -0.19
POLR2J3-201ENST00000379340 MORC1Q86VD1 984 aa13.85□□□□□ -0.19
POLR2J3-201ENST00000379340 JCADQ9P266 1359 aa13.85□□□□□ -0.19
POLR2J3-201ENST00000379340 RRP1P56182 461 aaKnown RBP13.84□□□□□ -0.19
POLR2J3-201ENST00000379340 SLAIN2Q9P270 581 aa13.84□□□□□ -0.19
POLR2J3-201ENST00000379340 COL16A1Q07092 1604 aaPredicted RBP13.84□□□□□ -0.19
POLR2J3-201ENST00000379340 NRXN3Q9Y4C0 1643 aa13.84□□□□□ -0.19
POLR2J3-201ENST00000379340 SHPRHQ149N8 1683 aa13.84□□□□□ -0.19
POLR2J3-201ENST00000379340 POGKQ9P215 609 aa13.83□□□□□ -0.19
POLR2J3-201ENST00000379340 NWD1Q149M9 1564 aa13.83□□□□□ -0.19
POLR2J3-201ENST00000379340 ABCC11Q96J66 1382 aa13.83□□□□□ -0.2
POLR2J3-201ENST00000379340 ZNF521Q96K83 1311 aa13.83□□□□□ -0.2
POLR2J3-201ENST00000379340 STK26Q9P289 416 aa13.83□□□□□ -0.2
POLR2J3-201ENST00000379340 PRAM1Q96QH2 718 aa13.82□□□□□ -0.2
POLR2J3-201ENST00000379340 SALL2Q9Y467 1007 aaPredicted RBP13.82□□□□□ -0.2
POLR2J3-201ENST00000379340 NKTRP30414 1462 aaKnown RBP13.81□□□□□ -0.2
POLR2J3-201ENST00000379340 MSH6P52701 1360 aa13.81□□□□□ -0.2
POLR2J3-201ENST00000379340 SRPK2P78362 688 aaKnown RBP13.81□□□□□ -0.2
POLR2J3-201ENST00000379340 CFAP53Q96M91 514 aa13.81□□□□□ -0.2
POLR2J3-201ENST00000379340 CABP2Q9NPB3 220 aa13.81□□□□□ -0.2
POLR2J3-201ENST00000379340 TERF2IPQ9NYB0 399 aa13.81□□□□□ -0.2
POLR2J3-201ENST00000379340 PLEKHH1Q9ULM0 1364 aa13.8□□□□□ -0.2
POLR2J3-201ENST00000379340 A0A1W2PP64 1363 aa13.8□□□□□ -0.2
POLR2J3-201ENST00000379340 SENP3-EIF4A1A0A087X0R7 540 aa13.79□□□□□ -0.2
POLR2J3-201ENST00000379340 GOLGA2Q08379 1002 aa13.79□□□□□ -0.2
POLR2J3-201ENST00000379340 SIRT1Q96EB6 747 aa13.79□□□□□ -0.2
POLR2J3-201ENST00000379340 CDCA7LQ96GN5 454 aa13.79□□□□□ -0.2
POLR2J3-201ENST00000379340 KIF20BQ96Q89 1820 aa13.79□□□□□ -0.2
POLR2J3-201ENST00000379340 TECPR2O15040 1411 aa13.79□□□□□ -0.2
POLR2J3-201ENST00000379340 ATP7BP35670 1465 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms