RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 NPC1L1Q9UHC9 1359 aa19.95■□□□□ 0.78
CKAP4-201ENST00000378026 RTEL1-TNFRSF6BF6WH68 1400 aa19.95■□□□□ 0.78
CKAP4-201ENST00000378026 ABCA8O94911 1581 aa19.95■□□□□ 0.78
CKAP4-201ENST00000378026 SMC4Q9NTJ3 1288 aa19.94■□□□□ 0.78
CKAP4-201ENST00000378026 AAMPQ13685 434 aa19.94■□□□□ 0.78
CKAP4-201ENST00000378026 KIAA1211Q6ZU35 1233 aa19.93■□□□□ 0.78
CKAP4-201ENST00000378026 GBP4Q96PP9 640 aa19.92■□□□□ 0.78
CKAP4-201ENST00000378026 LNPKQ9C0E8 428 aa19.92■□□□□ 0.78
CKAP4-201ENST00000378026 RNF17Q9BXT8 1623 aaKnown RBP19.92■□□□□ 0.78
CKAP4-201ENST00000378026 ARHGAP5Q13017 1502 aa19.91■□□□□ 0.78
CKAP4-201ENST00000378026 MTHFSP49914 203 aa19.91■□□□□ 0.78
CKAP4-201ENST00000378026 RBM10P98175 930 aaKnown RBP19.91■□□□□ 0.78
CKAP4-201ENST00000378026 WDR63Q8IWG1 891 aa19.91■□□□□ 0.78
CKAP4-201ENST00000378026 U2AF1L5P0DN76 240 aaPredicted RBP19.9■□□□□ 0.78
CKAP4-201ENST00000378026 U2AF1Q01081 240 aaKnown RBP eCLIP19.9■□□□□ 0.78
CKAP4-201ENST00000378026 SLC12A5Q9H2X9 1139 aa19.9■□□□□ 0.78
CKAP4-201ENST00000378026 UNC13BO14795 1591 aa19.9■□□□□ 0.78
CKAP4-201ENST00000378026 POLR3AO14802 1390 aaPredicted RBP19.89■□□□□ 0.78
CKAP4-201ENST00000378026 TRIM27P14373 513 aa19.89■□□□□ 0.77
CKAP4-201ENST00000378026 MYOM1P52179 1685 aa19.88■□□□□ 0.77
CKAP4-201ENST00000378026 CDC42BPBQ9Y5S2 1711 aa19.88■□□□□ 0.77
CKAP4-201ENST00000378026 CD2BP2O95400 341 aaKnown RBP19.88■□□□□ 0.77
CKAP4-201ENST00000378026 EXOSC9Q06265 439 aaKnown RBP19.88■□□□□ 0.77
CKAP4-201ENST00000378026 IQGAP1P46940 1657 aa19.88■□□□□ 0.77
CKAP4-201ENST00000378026 ZMYM3Q14202 1370 aa19.88■□□□□ 0.77
CKAP4-201ENST00000378026 MADDQ8WXG6 1647 aa19.88■□□□□ 0.77
CKAP4-201ENST00000378026 RBM42Q9BTD8 480 aaKnown RBP19.88■□□□□ 0.77
CKAP4-201ENST00000378026 PLXNC1O60486 1568 aa19.87■□□□□ 0.77
CKAP4-201ENST00000378026 NASPP49321 788 aaPredicted RBP19.87■□□□□ 0.77
CKAP4-201ENST00000378026 ARID3AQ99856 593 aa19.87■□□□□ 0.77
CKAP4-201ENST00000378026 ISY1Q9ULR0 285 aaKnown RBP19.87■□□□□ 0.77
CKAP4-201ENST00000378026 IQGAP3Q86VI3 1631 aa19.86■□□□□ 0.77
CKAP4-201ENST00000378026 TPM2P07951 284 aa19.86■□□□□ 0.77
CKAP4-201ENST00000378026 NCLP19338 710 aaKnown RBP19.86■□□□□ 0.77
CKAP4-201ENST00000378026 SSFA2P28290 1259 aa19.86■□□□□ 0.77
CKAP4-201ENST00000378026 DDIT3P35638 169 aa19.86■□□□□ 0.77
CKAP4-201ENST00000378026 RAB3GAP1Q15042 981 aa19.85■□□□□ 0.77
CKAP4-201ENST00000378026 SSH1Q8WYL5 1049 aa19.85■□□□□ 0.77
CKAP4-201ENST00000378026 NSD3Q9BZ95 1437 aa19.85■□□□□ 0.77
CKAP4-201ENST00000378026 NOB1Q9ULX3 412 aaKnown RBP19.85■□□□□ 0.77
CKAP4-201ENST00000378026 ANP32BQ92688 251 aaKnown RBP19.84■□□□□ 0.77
CKAP4-201ENST00000378026 ATP10AO60312 1499 aa19.84■□□□□ 0.77
CKAP4-201ENST00000378026 ADGRF5Q8IZF2 1346 aa19.84■□□□□ 0.77
CKAP4-201ENST00000378026 SMC5Q8IY18 1101 aa19.84■□□□□ 0.77
CKAP4-201ENST00000378026 TMEM57Q8N5G2 664 aa19.84■□□□□ 0.77
CKAP4-201ENST00000378026 DDX49Q9Y6V7 483 aaKnown RBP19.84■□□□□ 0.77
CKAP4-201ENST00000378026 ERVK-7P63135 1459 aa19.84■□□□□ 0.77
CKAP4-201ENST00000378026 DDX19BQ9UMR2 479 aa19.84■□□□□ 0.77
CKAP4-201ENST00000378026 MSNP26038 577 aaKnown RBP19.83■□□□□ 0.77
CKAP4-201ENST00000378026 SKOR2Q2VWA4 1001 aaPredicted RBP19.83■□□□□ 0.77
CKAP4-201ENST00000378026 PHF23Q9BUL5 403 aaPredicted RBP19.83■□□□□ 0.77
CKAP4-201ENST00000378026 TRAK1Q9UPV9 953 aa19.83■□□□□ 0.77
CKAP4-201ENST00000378026 HDAC1Q13547 482 aaPredicted RBP19.83■□□□□ 0.76
CKAP4-201ENST00000378026 KDM5AP29375 1690 aaKnown RBP19.83■□□□□ 0.76
CKAP4-201ENST00000378026 RBM25P49756 843 aaKnown RBP19.82■□□□□ 0.76
CKAP4-201ENST00000378026 CFAP53Q96M91 514 aa19.82■□□□□ 0.76
CKAP4-201ENST00000378026 PDCL3Q9H2J4 239 aa19.82■□□□□ 0.76
CKAP4-201ENST00000378026 U2SURPO15042 1029 aaKnown RBP19.82■□□□□ 0.76
CKAP4-201ENST00000378026 SNX21Q969T3 373 aa19.82■□□□□ 0.76
CKAP4-201ENST00000378026 SCAPERQ9BY12 1400 aa19.81■□□□□ 0.76
CKAP4-201ENST00000378026 CCDC173Q0VFZ6 552 aa19.81■□□□□ 0.76
CKAP4-201ENST00000378026 ATF7IPQ6VMQ6 1270 aa19.81■□□□□ 0.76
CKAP4-201ENST00000378026 FAM13BQ9NYF5 915 aa19.81■□□□□ 0.76
CKAP4-201ENST00000378026 MAST1Q9Y2H9 1570 aa19.81■□□□□ 0.76
CKAP4-201ENST00000378026 CHGAP10645 457 aaKnown RBP19.8■□□□□ 0.76
CKAP4-201ENST00000378026 ZSCAN30Q86W11 494 aa19.8■□□□□ 0.76
CKAP4-201ENST00000378026 R3HCC1Q9Y3T6 440 aaKnown RBP19.8■□□□□ 0.76
CKAP4-201ENST00000378026 PREX2Q70Z35 1606 aa19.8■□□□□ 0.76
CKAP4-201ENST00000378026 NCOA3Q9Y6Q9 1424 aa19.79■□□□□ 0.76
CKAP4-201ENST00000378026 ANKRD45Q5TZF3 282 aa19.79■□□□□ 0.76
CKAP4-201ENST00000378026 GAS2L2Q8NHY3 880 aa19.79■□□□□ 0.76
CKAP4-201ENST00000378026 CIZ1Q9ULV3 898 aaPredicted RBP19.79■□□□□ 0.76
CKAP4-201ENST00000378026 GOLGA6L22H0YM25 854 aa19.79■□□□□ 0.76
CKAP4-201ENST00000378026 KIF2CQ99661 725 aa19.78■□□□□ 0.76
CKAP4-201ENST00000378026 C1orf115Q9H7X2 142 aa19.78■□□□□ 0.76
CKAP4-201ENST00000378026 DUOX2Q9NRD8 1548 aa19.78■□□□□ 0.76
CKAP4-201ENST00000378026 K7ELQ4 463 aaPredicted RBP19.77■□□□□ 0.76
CKAP4-201ENST00000378026 CHD1LQ86WJ1 897 aa19.77■□□□□ 0.76
CKAP4-201ENST00000378026 CEP152O94986 1710 aa19.77■□□□□ 0.76
CKAP4-201ENST00000378026 NUCB1Q02818 461 aa19.77■□□□□ 0.75
CKAP4-201ENST00000378026 CCDC27Q2M243 656 aa19.77■□□□□ 0.75
CKAP4-201ENST00000378026 AFAP1Q8N556 730 aa19.77■□□□□ 0.75
CKAP4-201ENST00000378026 MCTP1Q6DN14 999 aa19.76■□□□□ 0.75
CKAP4-201ENST00000378026 SENP3Q9H4L4 574 aaPredicted RBP19.76■□□□□ 0.75
CKAP4-201ENST00000378026 ZBTB40Q9NUA8 1239 aa19.76■□□□□ 0.75
CKAP4-201ENST00000378026 TTC37Q6PGP7 1564 aa19.75■□□□□ 0.75
CKAP4-201ENST00000378026 CAVIN1Q6NZI2 390 aaKnown RBP19.75■□□□□ 0.75
CKAP4-201ENST00000378026 IQSEC2Q5JU85 1478 aa19.75■□□□□ 0.75
CKAP4-201ENST00000378026 ERCC6Q03468 1493 aa19.74■□□□□ 0.75
CKAP4-201ENST00000378026 ZBTB7CA1YPR0 619 aa19.74■□□□□ 0.75
CKAP4-201ENST00000378026 OFD1O75665 1012 aa19.74■□□□□ 0.75
CKAP4-201ENST00000378026 RIPK4P57078 832 aa19.74■□□□□ 0.75
CKAP4-201ENST00000378026 PPP1R9BQ96SB3 815 aa19.74■□□□□ 0.75
CKAP4-201ENST00000378026 BAG4O95429 457 aaKnown RBP19.74■□□□□ 0.75
CKAP4-201ENST00000378026 XPCQ01831 940 aaPredicted RBP19.74■□□□□ 0.75
CKAP4-201ENST00000378026 TMEM132EQ6IEE7 984 aa19.74■□□□□ 0.75
CKAP4-201ENST00000378026 SLC24A1O60721 1099 aa19.73■□□□□ 0.75
CKAP4-201ENST00000378026 TBC1D9Q6ZT07 1266 aa19.73■□□□□ 0.75
CKAP4-201ENST00000378026 STAC3Q96MF2 364 aa19.72■□□□□ 0.75
CKAP4-201ENST00000378026 SHPRHQ149N8 1683 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms