RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 UGGT1Q9NYU2 1555 aa11.69□□□□□ -0.54
SNRNP40-202ENST00000373720 CENPJQ9HC77 1338 aaPredicted RBP11.68□□□□□ -0.54
SNRNP40-202ENST00000373720 ASXL1Q8IXJ9 1541 aa11.68□□□□□ -0.54
SNRNP40-202ENST00000373720 GABBR2O75899 941 aa11.67□□□□□ -0.54
SNRNP40-202ENST00000373720 NSD2O96028 1365 aa11.67□□□□□ -0.54
SNRNP40-202ENST00000373720 NUDCQ9Y266 331 aa11.66□□□□□ -0.54
SNRNP40-202ENST00000373720 ADGRF5Q8IZF2 1346 aa11.65□□□□□ -0.54
SNRNP40-202ENST00000373720 FKBP8Q14318 412 aa11.65□□□□□ -0.54
SNRNP40-202ENST00000373720 CFAP70Q5T0N1 1121 aa11.65□□□□□ -0.54
SNRNP40-202ENST00000373720 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.65□□□□□ -0.54
SNRNP40-202ENST00000373720 ADGRB1O14514 1584 aa11.65□□□□□ -0.54
SNRNP40-202ENST00000373720 NEXMIFQ5QGS0 1516 aa11.64□□□□□ -0.55
SNRNP40-202ENST00000373720 RNF123Q5XPI4 1314 aa11.63□□□□□ -0.55
SNRNP40-202ENST00000373720 EVC2Q86UK5 1308 aa11.63□□□□□ -0.55
SNRNP40-202ENST00000373720 PREX1Q8TCU6 1659 aa11.63□□□□□ -0.55
SNRNP40-202ENST00000373720 AMER1Q5JTC6 1135 aaPredicted RBP11.63□□□□□ -0.55
SNRNP40-202ENST00000373720 ERVK-7P63135 1459 aa11.63□□□□□ -0.55
SNRNP40-202ENST00000373720 MROH2AA6NES4 1674 aa11.62□□□□□ -0.55
SNRNP40-202ENST00000373720 BLMP54132 1417 aaPredicted RBP11.62□□□□□ -0.55
SNRNP40-202ENST00000373720 YEATS2Q9ULM3 1422 aa11.62□□□□□ -0.55
SNRNP40-202ENST00000373720 CCDC184Q52MB2 194 aa11.62□□□□□ -0.55
SNRNP40-202ENST00000373720 SIRT1Q96EB6 747 aa11.62□□□□□ -0.55
SNRNP40-202ENST00000373720 PPP4R2Q9NY27 417 aa11.62□□□□□ -0.55
SNRNP40-202ENST00000373720 SPATA31D1Q6ZQQ2 1576 aa11.62□□□□□ -0.55
SNRNP40-202ENST00000373720 ARHGEF40Q8TER5 1519 aa11.61□□□□□ -0.55
SNRNP40-202ENST00000373720 USP32Q8NFA0 1604 aa11.61□□□□□ -0.55
SNRNP40-202ENST00000373720 IDI1Q13907 227 aa11.61□□□□□ -0.55
SNRNP40-202ENST00000373720 TMEM131LA2VDJ0 1609 aa11.6□□□□□ -0.55
SNRNP40-202ENST00000373720 CHGAP10645 457 aaKnown RBP11.6□□□□□ -0.55
SNRNP40-202ENST00000373720 ESF1Q9H501 851 aaKnown RBP11.6□□□□□ -0.55
SNRNP40-202ENST00000373720 ATAD2Q6PL18 1390 aa11.59□□□□□ -0.55
SNRNP40-202ENST00000373720 DLC1Q96QB1 1528 aa11.59□□□□□ -0.55
SNRNP40-202ENST00000373720 CGNL1Q0VF96 1302 aa11.59□□□□□ -0.55
SNRNP40-202ENST00000373720 POLR3AO14802 1390 aaPredicted RBP11.58□□□□□ -0.56
SNRNP40-202ENST00000373720 WDR43Q15061 677 aaKnown RBP eCLIP11.58□□□□□ -0.56
SNRNP40-202ENST00000373720 SIGLEC1Q9BZZ2 1709 aa11.57□□□□□ -0.56
SNRNP40-202ENST00000373720 MYOM1P52179 1685 aa11.57□□□□□ -0.56
SNRNP40-202ENST00000373720 PPP2R1AP30153 589 aa11.57□□□□□ -0.56
SNRNP40-202ENST00000373720 ANKRD36BQ8N2N9 1353 aa11.56□□□□□ -0.56
SNRNP40-202ENST00000373720 LHX8Q68G74 356 aa11.56□□□□□ -0.56
SNRNP40-202ENST00000373720 MED14O60244 1454 aa11.56□□□□□ -0.56
SNRNP40-202ENST00000373720 STAG3Q9UJ98 1225 aa11.55□□□□□ -0.56
SNRNP40-202ENST00000373720 QRICH2Q9H0J4 1663 aa11.55□□□□□ -0.56
SNRNP40-202ENST00000373720 CC2D1BQ5T0F9 858 aaKnown RBP11.54□□□□□ -0.56
SNRNP40-202ENST00000373720 CFAP53Q96M91 514 aa11.54□□□□□ -0.56
SNRNP40-202ENST00000373720 TERF2IPQ9NYB0 399 aa11.54□□□□□ -0.56
SNRNP40-202ENST00000373720 ABCC11Q96J66 1382 aa11.54□□□□□ -0.56
SNRNP40-202ENST00000373720 PNNQ9H307 717 aaKnown RBP11.53□□□□□ -0.56
SNRNP40-202ENST00000373720 TRAK1Q9UPV9 953 aa11.53□□□□□ -0.56
SNRNP40-202ENST00000373720 KIF13AQ9H1H9 1805 aa11.53□□□□□ -0.56
SNRNP40-202ENST00000373720 YTHDC2Q9H6S0 1430 aaKnown RBP11.52□□□□□ -0.56
SNRNP40-202ENST00000373720 ARHGEF28Q8N1W1 1705 aaKnown RBP11.52□□□□□ -0.56
SNRNP40-202ENST00000373720 A2ML1A8K2U0 1454 aa11.52□□□□□ -0.56
SNRNP40-202ENST00000373720 NLRP1Q9C000 1473 aa11.52□□□□□ -0.56
SNRNP40-202ENST00000373720 FAM135BQ49AJ0 1406 aa11.52□□□□□ -0.57
SNRNP40-202ENST00000373720 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.51□□□□□ -0.57
SNRNP40-202ENST00000373720 CLTCQ00610 1675 aaKnown RBP11.51□□□□□ -0.57
SNRNP40-202ENST00000373720 ZMYM3Q14202 1370 aa11.51□□□□□ -0.57
SNRNP40-202ENST00000373720 CD44P16070 742 aaKnown RBP11.5□□□□□ -0.57
SNRNP40-202ENST00000373720 ALKQ9UM73 1620 aa11.49□□□□□ -0.57
SNRNP40-202ENST00000373720 AAMPQ13685 434 aa11.49□□□□□ -0.57
SNRNP40-202ENST00000373720 MORC1Q86VD1 984 aa11.49□□□□□ -0.57
SNRNP40-202ENST00000373720 RCAN3Q9UKA8 241 aa11.49□□□□□ -0.57
SNRNP40-202ENST00000373720 FARP1Q9Y4F1 1045 aaPredicted RBP11.49□□□□□ -0.57
SNRNP40-202ENST00000373720 TECPR2O15040 1411 aa11.49□□□□□ -0.57
SNRNP40-202ENST00000373720 RIMS2Q9UQ26 1411 aa11.49□□□□□ -0.57
SNRNP40-202ENST00000373720 PTPRMP28827 1452 aa11.49□□□□□ -0.57
SNRNP40-202ENST00000373720 GOLGA2Q08379 1002 aa11.48□□□□□ -0.57
SNRNP40-202ENST00000373720 CCDC27Q2M243 656 aa11.48□□□□□ -0.57
SNRNP40-202ENST00000373720 HDGFL2Q7Z4V5 671 aaPredicted RBP11.48□□□□□ -0.57
SNRNP40-202ENST00000373720 POGKQ9P215 609 aa11.48□□□□□ -0.57
SNRNP40-202ENST00000373720 TSPOAP1O95153 1857 aa11.47□□□□□ -0.57
SNRNP40-202ENST00000373720 NSD3Q9BZ95 1437 aa11.47□□□□□ -0.57
SNRNP40-202ENST00000373720 CARD14Q9BXL6 1004 aa11.47□□□□□ -0.57
SNRNP40-202ENST00000373720 ADAMTS8Q9UP79 889 aa11.47□□□□□ -0.57
SNRNP40-202ENST00000373720 ATP7BP35670 1465 aa11.46□□□□□ -0.57
SNRNP40-202ENST00000373720 TNRQ92752 1358 aa11.46□□□□□ -0.57
SNRNP40-202ENST00000373720 ZNF521Q96K83 1311 aa11.46□□□□□ -0.57
SNRNP40-202ENST00000373720 E9PSI1 815 aa11.46□□□□□ -0.57
SNRNP40-202ENST00000373720 CFAP65Q6ZU64 1925 aaKnown RBP11.46□□□□□ -0.58
SNRNP40-202ENST00000373720 TULP4Q9NRJ4 1543 aa11.45□□□□□ -0.58
SNRNP40-202ENST00000373720 CT47B1P0C2W7 299 aaPredicted RBP11.45□□□□□ -0.58
SNRNP40-202ENST00000373720 MYT1Q01538 1121 aa11.45□□□□□ -0.58
SNRNP40-202ENST00000373720 TMEM132EQ6IEE7 984 aa11.45□□□□□ -0.58
SNRNP40-202ENST00000373720 KNDC1Q76NI1 1749 aa11.44□□□□□ -0.58
SNRNP40-202ENST00000373720 RRP1P56182 461 aaKnown RBP11.44□□□□□ -0.58
SNRNP40-202ENST00000373720 WDR63Q8IWG1 891 aa11.44□□□□□ -0.58
SNRNP40-202ENST00000373720 TRMT2AQ8IZ69 625 aaKnown RBP11.44□□□□□ -0.58
SNRNP40-202ENST00000373720 SRPK2P78362 688 aaKnown RBP11.43□□□□□ -0.58
SNRNP40-202ENST00000373720 FBXO31Q5XUX0 539 aaPredicted RBP11.43□□□□□ -0.58
SNRNP40-202ENST00000373720 RUNDC1Q96C34 613 aa11.43□□□□□ -0.58
SNRNP40-202ENST00000373720 TMEM2Q9UHN6 1383 aa11.42□□□□□ -0.58
SNRNP40-202ENST00000373720 PLEKHG1Q9ULL1 1385 aa11.42□□□□□ -0.58
SNRNP40-202ENST00000373720 CLCN6P51797 869 aa11.42□□□□□ -0.58
SNRNP40-202ENST00000373720 SLC12A5Q9H2X9 1139 aa11.42□□□□□ -0.58
SNRNP40-202ENST00000373720 CCDC136Q96JN2 1154 aa11.41□□□□□ -0.58
SNRNP40-202ENST00000373720 PRAM1Q96QH2 718 aa11.41□□□□□ -0.58
SNRNP40-202ENST00000373720 EID1Q9Y6B2 187 aa11.41□□□□□ -0.58
SNRNP40-202ENST00000373720 CPS1P31327 1500 aa11.4□□□□□ -0.58
SNRNP40-202ENST00000373720 MYO5BQ9ULV0 1848 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms