RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 RAPGEF3O95398 923 aa12.02□□□□□ -0.49
COL4A6-202ENST00000372216 DIAPH3Q9NSV4 1193 aa12.02□□□□□ -0.49
COL4A6-202ENST00000372216 AIMP1Q12904 312 aaKnown RBP12.01□□□□□ -0.49
COL4A6-202ENST00000372216 GOLGA6L1Q8N7Z2 621 aa12.01□□□□□ -0.49
COL4A6-202ENST00000372216 API5Q9BZZ5 524 aaKnown RBP12.01□□□□□ -0.49
COL4A6-202ENST00000372216 KIF7Q2M1P5 1343 aa12.01□□□□□ -0.49
COL4A6-202ENST00000372216 LRRFIP1Q32MZ4 808 aaKnown RBP12.01□□□□□ -0.49
COL4A6-202ENST00000372216 CENPQQ7L2Z9 268 aaPredicted RBP12.01□□□□□ -0.49
COL4A6-202ENST00000372216 RBM33Q96EV2 1170 aaKnown RBP12.01□□□□□ -0.49
COL4A6-202ENST00000372216 GNAI1P63096 354 aa12.01□□□□□ -0.49
COL4A6-202ENST00000372216 RIC3Q7Z5B4 369 aa12.01□□□□□ -0.49
COL4A6-202ENST00000372216 STRN4Q9NRL3 753 aa12.01□□□□□ -0.49
COL4A6-202ENST00000372216 CCDC7Q96M83 1385 aa12.01□□□□□ -0.49
COL4A6-202ENST00000372216 TPM3P06753 285 aa12.01□□□□□ -0.49
COL4A6-202ENST00000372216 CCDC27Q2M243 656 aa12.01□□□□□ -0.49
COL4A6-202ENST00000372216 CCDC43Q96MW1 224 aaKnown RBP12.01□□□□□ -0.49
COL4A6-202ENST00000372216 ROCK1Q13464 1354 aa12□□□□□ -0.49
COL4A6-202ENST00000372216 G3BP1Q13283 466 aaKnown RBP eCLIP12□□□□□ -0.49
COL4A6-202ENST00000372216 DDX19BQ9UMR2 479 aa12□□□□□ -0.49
COL4A6-202ENST00000372216 EXOC6Q8TAG9 804 aa12□□□□□ -0.49
COL4A6-202ENST00000372216 KIF3AQ9Y496 699 aa12□□□□□ -0.49
COL4A6-202ENST00000372216 POGZQ7Z3K3 1410 aa11.99□□□□□ -0.49
COL4A6-202ENST00000372216 TROQ12816 1431 aaPredicted RBP11.99□□□□□ -0.49
COL4A6-202ENST00000372216 PIP4K2BP78356 416 aa11.99□□□□□ -0.49
COL4A6-202ENST00000372216 FAM184AQ8NB25 1140 aa11.99□□□□□ -0.49
COL4A6-202ENST00000372216 SMG6Q86US8 1419 aaKnown RBP11.99□□□□□ -0.49
COL4A6-202ENST00000372216 TMEM132AQ24JP5 1023 aa11.99□□□□□ -0.49
COL4A6-202ENST00000372216 ZBED9Q6R2W3 1325 aa11.99□□□□□ -0.49
COL4A6-202ENST00000372216 SYNE3Q6ZMZ3 975 aa11.99□□□□□ -0.49
COL4A6-202ENST00000372216 DZIP1LQ8IYY4 767 aaKnown RBP11.99□□□□□ -0.49
COL4A6-202ENST00000372216 IKQ13123 557 aaPredicted RBP11.98□□□□□ -0.49
COL4A6-202ENST00000372216 CCAR1Q8IX12 1150 aaKnown RBP11.98□□□□□ -0.49
COL4A6-202ENST00000372216 CDK19Q9BWU1 502 aa11.98□□□□□ -0.49
COL4A6-202ENST00000372216 SUPT6HQ7KZ85 1726 aaKnown RBP11.98□□□□□ -0.49
COL4A6-202ENST00000372216 STK11IPQ8N1F8 1099 aa11.97□□□□□ -0.49
COL4A6-202ENST00000372216 ANKLE2Q86XL3 938 aa11.97□□□□□ -0.49
COL4A6-202ENST00000372216 RUFY2Q8WXA3 655 aa11.97□□□□□ -0.49
COL4A6-202ENST00000372216 NFXL1Q6ZNB6 911 aa11.97□□□□□ -0.49
COL4A6-202ENST00000372216 RBM42Q9BTD8 480 aaKnown RBP11.96□□□□□ -0.49
COL4A6-202ENST00000372216 LAMC3Q9Y6N6 1575 aa11.96□□□□□ -0.49
COL4A6-202ENST00000372216 ANO2Q9NQ90 1003 aa11.96□□□□□ -0.5
COL4A6-202ENST00000372216 CNTLNQ9NXG0 1405 aa11.96□□□□□ -0.5
COL4A6-202ENST00000372216 TNNT3P45378 269 aaPredicted RBP11.96□□□□□ -0.5
COL4A6-202ENST00000372216 PLEKHO1Q53GL0 409 aaPredicted RBP11.96□□□□□ -0.5
COL4A6-202ENST00000372216 PAF1Q8N7H5 531 aa11.95□□□□□ -0.5
COL4A6-202ENST00000372216 MTHFSP49914 203 aa11.95□□□□□ -0.5
COL4A6-202ENST00000372216 VSIG10Q8N0Z9 540 aa11.95□□□□□ -0.5
COL4A6-202ENST00000372216 ERBINQ96RT1 1412 aa11.95□□□□□ -0.5
COL4A6-202ENST00000372216 HFM1A2PYH4 1435 aa11.95□□□□□ -0.5
COL4A6-202ENST00000372216 CDK13Q14004 1512 aaKnown RBP11.95□□□□□ -0.5
COL4A6-202ENST00000372216 TPM2P07951 284 aa11.95□□□□□ -0.5
COL4A6-202ENST00000372216 GAS2L2Q8NHY3 880 aa11.94□□□□□ -0.5
COL4A6-202ENST00000372216 KIAA1107Q9UPP5 1409 aa11.94□□□□□ -0.5
COL4A6-202ENST00000372216 TSR1Q2NL82 804 aaKnown RBP11.94□□□□□ -0.5
COL4A6-202ENST00000372216 KIF6Q6ZMV9 814 aa11.94□□□□□ -0.5
COL4A6-202ENST00000372216 DAPK1P53355 1430 aa11.94□□□□□ -0.5
COL4A6-202ENST00000372216 ZFYVE27Q5T4F4 411 aa11.94□□□□□ -0.5
COL4A6-202ENST00000372216 CHMP4CQ96CF2 233 aa11.94□□□□□ -0.5
COL4A6-202ENST00000372216 IQGAP2Q13576 1575 aa11.94□□□□□ -0.5
COL4A6-202ENST00000372216 TATP17735 454 aaPredicted RBP11.93□□□□□ -0.5
COL4A6-202ENST00000372216 SF3B2Q13435 895 aaKnown RBP11.93□□□□□ -0.5
COL4A6-202ENST00000372216 NEUROD6Q96NK8 337 aa11.93□□□□□ -0.5
COL4A6-202ENST00000372216 DEKP35659 375 aaKnown RBP11.93□□□□□ -0.5
COL4A6-202ENST00000372216 FAM161AQ3B820 660 aa11.93□□□□□ -0.5
COL4A6-202ENST00000372216 NBPF1Q3BBV0 1214 aa11.93□□□□□ -0.5
COL4A6-202ENST00000372216 ZNF592Q92610 1267 aa11.93□□□□□ -0.5
COL4A6-202ENST00000372216 SLC26A8Q96RN1 970 aa11.93□□□□□ -0.5
COL4A6-202ENST00000372216 SLC52A1Q9NWF4 448 aa11.93□□□□□ -0.5
COL4A6-202ENST00000372216 KIAA0586Q9BVV6 1533 aa11.93□□□□□ -0.5
COL4A6-202ENST00000372216 CABP1Q9NZU7 370 aa11.92□□□□□ -0.5
COL4A6-202ENST00000372216 RTEL1-TNFRSF6BF6WH68 1400 aa11.92□□□□□ -0.5
COL4A6-202ENST00000372216 PRXQ9BXM0 1461 aa11.92□□□□□ -0.5
COL4A6-202ENST00000372216 TOM1L2Q6ZVM7 507 aa11.92□□□□□ -0.5
COL4A6-202ENST00000372216 IPO9Q96P70 1041 aaKnown RBP11.92□□□□□ -0.5
COL4A6-202ENST00000372216 TIAM1Q13009 1591 aa11.92□□□□□ -0.5
COL4A6-202ENST00000372216 ZKSCAN1P17029 563 aaPredicted RBP11.92□□□□□ -0.5
COL4A6-202ENST00000372216 HSP90AB4PQ58FF6 505 aa11.92□□□□□ -0.5
COL4A6-202ENST00000372216 NAP1L1P55209 391 aaKnown RBP11.91□□□□□ -0.5
COL4A6-202ENST00000372216 TRIM29Q14134 588 aa11.91□□□□□ -0.5
COL4A6-202ENST00000372216 UBTFL1P0CB47 393 aaPredicted RBP11.91□□□□□ -0.5
COL4A6-202ENST00000372216 PRKAR2BP31323 418 aa11.91□□□□□ -0.5
COL4A6-202ENST00000372216 SKIDA1Q1XH10 827 aa11.91□□□□□ -0.5
COL4A6-202ENST00000372216 CCDC30Q5VVM6 783 aa11.91□□□□□ -0.5
COL4A6-202ENST00000372216 TRDNQ13061 729 aa11.91□□□□□ -0.5
COL4A6-202ENST00000372216 ARHGEF11O15085 1522 aa11.9□□□□□ -0.5
COL4A6-202ENST00000372216 ZNF692Q9BU19 519 aaPredicted RBP11.9□□□□□ -0.5
COL4A6-202ENST00000372216 CD109Q6YHK3 1445 aa11.9□□□□□ -0.5
COL4A6-202ENST00000372216 ERICH2A1L162 156 aa11.9□□□□□ -0.5
COL4A6-202ENST00000372216 PHF14O94880 888 aa11.9□□□□□ -0.5
COL4A6-202ENST00000372216 REC8O95072 547 aa11.9□□□□□ -0.5
COL4A6-202ENST00000372216 PPP2R1AP30153 589 aa11.9□□□□□ -0.5
COL4A6-202ENST00000372216 DDX54Q8TDD1 881 aaKnown RBP11.9□□□□□ -0.5
COL4A6-202ENST00000372216 ADAMTS8Q9UP79 889 aa11.9□□□□□ -0.5
COL4A6-202ENST00000372216 ERC2O15083 957 aa11.9□□□□□ -0.5
COL4A6-202ENST00000372216 ATP2B2Q01814 1243 aa11.9□□□□□ -0.5
COL4A6-202ENST00000372216 CPLX2Q6PUV4 134 aaKnown RBP11.9□□□□□ -0.5
COL4A6-202ENST00000372216 CABP4P57796 275 aa11.89□□□□□ -0.51
COL4A6-202ENST00000372216 CUL7Q14999 1698 aa11.89□□□□□ -0.51
COL4A6-202ENST00000372216 EPRSP07814 1512 aaKnown RBP11.89□□□□□ -0.51
COL4A6-202ENST00000372216 DNAJC5BQ9UF47 199 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms