RNA–Protein interactions for RNA: ENST00000369406.7

HMGCS2-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS2, Length 2,428 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2-201ENST00000369406 SLC12A5Q9H2X9 1139 aa19.31■□□□□ 0.68
HMGCS2-201ENST00000369406 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.3■□□□□ 0.68
HMGCS2-201ENST00000369406 ROBO2Q9HCK4 1378 aa19.3■□□□□ 0.68
HMGCS2-201ENST00000369406 EVC2Q86UK5 1308 aa19.3■□□□□ 0.68
HMGCS2-201ENST00000369406 AMER1Q5JTC6 1135 aaPredicted RBP19.3■□□□□ 0.68
HMGCS2-201ENST00000369406 MRS2Q9HD23 443 aa19.3■□□□□ 0.68
HMGCS2-201ENST00000369406 KTN1Q86UP2 1357 aaKnown RBP19.29■□□□□ 0.68
HMGCS2-201ENST00000369406 EID1Q9Y6B2 187 aa19.29■□□□□ 0.68
HMGCS2-201ENST00000369406 SLC24A1O60721 1099 aa19.27■□□□□ 0.68
HMGCS2-201ENST00000369406 TMC1Q8TDI8 760 aa19.26■□□□□ 0.67
HMGCS2-201ENST00000369406 XRN1Q8IZH2 1706 aaKnown RBP19.26■□□□□ 0.67
HMGCS2-201ENST00000369406 DIP2AQ14689 1571 aa19.26■□□□□ 0.67
HMGCS2-201ENST00000369406 CENPBP07199 599 aaPredicted RBP19.25■□□□□ 0.67
HMGCS2-201ENST00000369406 RALBP1Q15311 655 aa19.25■□□□□ 0.67
HMGCS2-201ENST00000369406 MYBBP1AQ9BQG0 1328 aaKnown RBP19.25■□□□□ 0.67
HMGCS2-201ENST00000369406 FAM135BQ49AJ0 1406 aa19.25■□□□□ 0.67
HMGCS2-201ENST00000369406 CD163L1Q9NR16 1453 aa19.24■□□□□ 0.67
HMGCS2-201ENST00000369406 CDK19Q9BWU1 502 aa19.24■□□□□ 0.67
HMGCS2-201ENST00000369406 KNSTRNQ9Y448 316 aa19.24■□□□□ 0.67
HMGCS2-201ENST00000369406 SRPK2P78362 688 aaKnown RBP19.23■□□□□ 0.67
HMGCS2-201ENST00000369406 NSD3Q9BZ95 1437 aa19.23■□□□□ 0.67
HMGCS2-201ENST00000369406 USP32Q8NFA0 1604 aa19.22■□□□□ 0.67
HMGCS2-201ENST00000369406 FAM9BQ8IZU0 186 aa19.22■□□□□ 0.67
HMGCS2-201ENST00000369406 CHD2O14647 1828 aaKnown RBP19.21■□□□□ 0.67
HMGCS2-201ENST00000369406 PUS7Q96PZ0 661 aaKnown RBP19.21■□□□□ 0.67
HMGCS2-201ENST00000369406 TBX22Q9Y458 520 aa19.21■□□□□ 0.67
HMGCS2-201ENST00000369406 ADGRB2O60241 1585 aa19.2■□□□□ 0.66
HMGCS2-201ENST00000369406 A0A1W2PP64 1363 aa19.19■□□□□ 0.66
HMGCS2-201ENST00000369406 SIRT1Q96EB6 747 aa19.19■□□□□ 0.66
HMGCS2-201ENST00000369406 AMOTL2Q9Y2J4 779 aa19.19■□□□□ 0.66
HMGCS2-201ENST00000369406 ANKRD36BQ8N2N9 1353 aa19.18■□□□□ 0.66
HMGCS2-201ENST00000369406 NCKAP5LQ9HCH0 1330 aa19.18■□□□□ 0.66
HMGCS2-201ENST00000369406 BRD4O60885 1362 aaPredicted RBP19.18■□□□□ 0.66
HMGCS2-201ENST00000369406 NPC1L1Q9UHC9 1359 aa19.18■□□□□ 0.66
HMGCS2-201ENST00000369406 KDM4FA0A1W2PPD8 638 aa19.17■□□□□ 0.66
HMGCS2-201ENST00000369406 PNISRQ8TF01 805 aaKnown RBP19.17■□□□□ 0.66
HMGCS2-201ENST00000369406 RGPD8O14715 1765 aaPredicted RBP19.17■□□□□ 0.66
HMGCS2-201ENST00000369406 ATAD2Q6PL18 1390 aa19.17■□□□□ 0.66
HMGCS2-201ENST00000369406 ANKLE2Q86XL3 938 aa19.16■□□□□ 0.66
HMGCS2-201ENST00000369406 WASLO00401 505 aaPredicted RBP19.16■□□□□ 0.66
HMGCS2-201ENST00000369406 PTCH1Q13635 1447 aa19.16■□□□□ 0.66
HMGCS2-201ENST00000369406 NLRP13Q86W25 1043 aa19.15■□□□□ 0.66
HMGCS2-201ENST00000369406 TOPAZ1Q8N9V7 1692 aa19.15■□□□□ 0.66
HMGCS2-201ENST00000369406 PPP2R1AP30153 589 aa19.15■□□□□ 0.66
HMGCS2-201ENST00000369406 PRR36Q9H6K5 1346 aa19.14■□□□□ 0.66
HMGCS2-201ENST00000369406 ATP7BP35670 1465 aa19.14■□□□□ 0.66
HMGCS2-201ENST00000369406 CABP1Q9NZU7 370 aa19.14■□□□□ 0.65
HMGCS2-201ENST00000369406 KCNA6P17658 529 aa19.13■□□□□ 0.65
HMGCS2-201ENST00000369406 HNRNPUQ00839 825 aaKnown RBP eCLIP19.13■□□□□ 0.65
HMGCS2-201ENST00000369406 SENP3-EIF4A1A0A087X0R7 540 aa19.13■□□□□ 0.65
HMGCS2-201ENST00000369406 KIF20BQ96Q89 1820 aa19.13■□□□□ 0.65
HMGCS2-201ENST00000369406 AKAP12Q02952 1782 aa19.13■□□□□ 0.65
HMGCS2-201ENST00000369406 ANKRD26Q9UPS8 1709 aa19.12■□□□□ 0.65
HMGCS2-201ENST00000369406 NPHP4O75161 1426 aaPredicted RBP19.12■□□□□ 0.65
HMGCS2-201ENST00000369406 NINLQ9Y2I6 1382 aa19.12■□□□□ 0.65
HMGCS2-201ENST00000369406 NALCNQ8IZF0 1738 aa19.12■□□□□ 0.65
HMGCS2-201ENST00000369406 MON2Q7Z3U7 1717 aa19.11■□□□□ 0.65
HMGCS2-201ENST00000369406 ITSN1Q15811 1721 aa19.1■□□□□ 0.65
HMGCS2-201ENST00000369406 PPIP5K1Q6PFW1 1433 aa19.1■□□□□ 0.65
HMGCS2-201ENST00000369406 NUDT16Q96DE0 195 aaKnown RBP19.09■□□□□ 0.65
HMGCS2-201ENST00000369406 CDC42BPGQ6DT37 1551 aa19.09■□□□□ 0.65
HMGCS2-201ENST00000369406 PIK3R4Q99570 1358 aa19.08■□□□□ 0.65
HMGCS2-201ENST00000369406 NUTM2FA1L443 756 aa19.08■□□□□ 0.64
HMGCS2-201ENST00000369406 NKTRP30414 1462 aaKnown RBP19.08■□□□□ 0.64
HMGCS2-201ENST00000369406 RBM33Q96EV2 1170 aaKnown RBP19.08■□□□□ 0.64
HMGCS2-201ENST00000369406 SCAF1Q9H7N4 1312 aaKnown RBP19.07■□□□□ 0.64
HMGCS2-201ENST00000369406 CPSF1Q10570 1443 aaKnown RBP19.07■□□□□ 0.64
HMGCS2-201ENST00000369406 STRCP1A6NGW2 1772 aa19.06■□□□□ 0.64
HMGCS2-201ENST00000369406 HSPA2P54652 639 aa19.06■□□□□ 0.64
HMGCS2-201ENST00000369406 TNNT2P45379 298 aaPredicted RBP19.05■□□□□ 0.64
HMGCS2-201ENST00000369406 FMN2Q9NZ56 1722 aa19.05■□□□□ 0.64
HMGCS2-201ENST00000369406 CGNL1Q0VF96 1302 aa19.05■□□□□ 0.64
HMGCS2-201ENST00000369406 SHPRHQ149N8 1683 aa19.05■□□□□ 0.64
HMGCS2-201ENST00000369406 NRKQ7Z2Y5 1582 aa19.04■□□□□ 0.64
HMGCS2-201ENST00000369406 NWD1Q149M9 1564 aa19.04■□□□□ 0.64
HMGCS2-201ENST00000369406 TERF2IPQ9NYB0 399 aa19.04■□□□□ 0.64
HMGCS2-201ENST00000369406 LMTK3Q96Q04 1460 aa19.03■□□□□ 0.64
HMGCS2-201ENST00000369406 GGNBP2Q9H3C7 697 aa19.03■□□□□ 0.64
HMGCS2-201ENST00000369406 MORC1Q86VD1 984 aa19.03■□□□□ 0.64
HMGCS2-201ENST00000369406 STRCQ7RTU9 1775 aa19.03■□□□□ 0.64
HMGCS2-201ENST00000369406 FYB1O15117 783 aa19.02■□□□□ 0.64
HMGCS2-201ENST00000369406 CCDC61Q9Y6R9 512 aa19.02■□□□□ 0.63
HMGCS2-201ENST00000369406 HDGFL2Q7Z4V5 671 aaPredicted RBP19.01■□□□□ 0.63
HMGCS2-201ENST00000369406 NSD2O96028 1365 aa19■□□□□ 0.63
HMGCS2-201ENST00000369406 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19■□□□□ 0.63
HMGCS2-201ENST00000369406 BLMP54132 1417 aaPredicted RBP18.99■□□□□ 0.63
HMGCS2-201ENST00000369406 ZRANB1Q9UGI0 708 aa18.99■□□□□ 0.63
HMGCS2-201ENST00000369406 GTF3C3Q9Y5Q9 886 aa18.99■□□□□ 0.63
HMGCS2-201ENST00000369406 ZBED9Q6R2W3 1325 aa18.98■□□□□ 0.63
HMGCS2-201ENST00000369406 ADAMTS8Q9UP79 889 aa18.97■□□□□ 0.63
HMGCS2-201ENST00000369406 MAP2P11137 1827 aaKnown RBP18.97■□□□□ 0.63
HMGCS2-201ENST00000369406 EDC4Q6P2E9 1401 aaKnown RBP18.97■□□□□ 0.63
HMGCS2-201ENST00000369406 FBLN1P23142 703 aa18.96■□□□□ 0.63
HMGCS2-201ENST00000369406 NME9Q86XW9 330 aa18.96■□□□□ 0.63
HMGCS2-201ENST00000369406 ACEP12821 1306 aa18.95■□□□□ 0.62
HMGCS2-201ENST00000369406 POLR3AO14802 1390 aaPredicted RBP18.94■□□□□ 0.62
HMGCS2-201ENST00000369406 ADGRL3Q9HAR2 1447 aa18.94■□□□□ 0.62
HMGCS2-201ENST00000369406 PLEKHG3A1L390 1219 aa18.94■□□□□ 0.62
HMGCS2-201ENST00000369406 PMFBP1Q8TBY8 1022 aa18.94■□□□□ 0.62
HMGCS2-201ENST00000369406 MTHFSP49914 203 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms