RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 BCL2L13Q9BXK5 485 aa13.29□□□□□ -0.28
CLIP1-203ENST00000361654 PLIN1O60240 522 aa13.29□□□□□ -0.28
CLIP1-203ENST00000361654 FOXD4L5Q5VV16 416 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-203ENST00000361654 FOXD4L4Q8WXT5 416 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-203ENST00000361654 FAM177BA6PVY3 158 aa13.27□□□□□ -0.28
CLIP1-203ENST00000361654 PIP4K2BP78356 416 aa13.27□□□□□ -0.28
CLIP1-203ENST00000361654 TOM1L2Q6ZVM7 507 aa13.27□□□□□ -0.28
CLIP1-203ENST00000361654 DDX11L8A8MPP1 907 aa13.27□□□□□ -0.29
CLIP1-203ENST00000361654 MYOM3Q5VTT5 1437 aa13.27□□□□□ -0.29
CLIP1-203ENST00000361654 CENPQQ7L2Z9 268 aaPredicted RBP13.26□□□□□ -0.29
CLIP1-203ENST00000361654 UBTFL1P0CB47 393 aaPredicted RBP13.26□□□□□ -0.29
CLIP1-203ENST00000361654 RDXP35241 583 aaKnown RBP13.26□□□□□ -0.29
CLIP1-203ENST00000361654 RUNDC1Q96C34 613 aa13.26□□□□□ -0.29
CLIP1-203ENST00000361654 TOP2AP11388 1531 aaKnown RBP13.26□□□□□ -0.29
CLIP1-203ENST00000361654 DZIP1LQ8IYY4 767 aaKnown RBP13.25□□□□□ -0.29
CLIP1-203ENST00000361654 GAPVD1Q14C86 1478 aa13.25□□□□□ -0.29
CLIP1-203ENST00000361654 APAF1O14727 1248 aa13.25□□□□□ -0.29
CLIP1-203ENST00000361654 ATAD2BQ9ULI0 1458 aa13.25□□□□□ -0.29
CLIP1-203ENST00000361654 EPS15P42566 896 aa13.24□□□□□ -0.29
CLIP1-203ENST00000361654 SPG7Q9UQ90 795 aa13.24□□□□□ -0.29
CLIP1-203ENST00000361654 CCDC30Q5VVM6 783 aa13.24□□□□□ -0.29
CLIP1-203ENST00000361654 OFD1O75665 1012 aa13.24□□□□□ -0.29
CLIP1-203ENST00000361654 SLC4A3P48751 1232 aa13.24□□□□□ -0.29
CLIP1-203ENST00000361654 GPS2Q13227 327 aa13.24□□□□□ -0.29
CLIP1-203ENST00000361654 CCAR2Q8N163 923 aaKnown RBP13.24□□□□□ -0.29
CLIP1-203ENST00000361654 PRDM11Q9NQV5 511 aa13.23□□□□□ -0.29
CLIP1-203ENST00000361654 CABP4P57796 275 aa13.23□□□□□ -0.29
CLIP1-203ENST00000361654 BICD2Q8TD16 824 aa13.23□□□□□ -0.29
CLIP1-203ENST00000361654 USP47Q96K76 1375 aa13.23□□□□□ -0.29
CLIP1-203ENST00000361654 CNNM1Q9NRU3 951 aa13.23□□□□□ -0.29
CLIP1-203ENST00000361654 HMOX1P09601 288 aa13.23□□□□□ -0.29
CLIP1-203ENST00000361654 SKOR2Q2VWA4 1001 aaPredicted RBP13.23□□□□□ -0.29
CLIP1-203ENST00000361654 GNAI3P08754 354 aa13.22□□□□□ -0.29
CLIP1-203ENST00000361654 MTMR7Q9Y216 660 aa13.22□□□□□ -0.29
CLIP1-203ENST00000361654 ZFYVE27Q5T4F4 411 aa13.22□□□□□ -0.29
CLIP1-203ENST00000361654 CLASRPQ8N2M8 674 aaKnown RBP13.22□□□□□ -0.29
CLIP1-203ENST00000361654 PNISRQ8TF01 805 aaKnown RBP13.22□□□□□ -0.29
CLIP1-203ENST00000361654 FBXO3Q9UK99 471 aa13.21□□□□□ -0.29
CLIP1-203ENST00000361654 INTS3Q68E01 1043 aaKnown RBP13.21□□□□□ -0.29
CLIP1-203ENST00000361654 CCDC73Q6ZRK6 1079 aa13.21□□□□□ -0.29
CLIP1-203ENST00000361654 GGNBP2Q9H3C7 697 aa13.21□□□□□ -0.29
CLIP1-203ENST00000361654 NINLQ9Y2I6 1382 aa13.21□□□□□ -0.29
CLIP1-203ENST00000361654 SMC3Q9UQE7 1217 aa13.21□□□□□ -0.29
CLIP1-203ENST00000361654 COG6Q9Y2V7 657 aa13.21□□□□□ -0.29
CLIP1-203ENST00000361654 DDX49Q9Y6V7 483 aaKnown RBP13.21□□□□□ -0.3
CLIP1-203ENST00000361654 RBM5P52756 815 aaKnown RBP eCLIP13.21□□□□□ -0.3
CLIP1-203ENST00000361654 DDX54Q8TDD1 881 aaKnown RBP13.21□□□□□ -0.3
CLIP1-203ENST00000361654 ZNF692Q9BU19 519 aaPredicted RBP13.21□□□□□ -0.3
CLIP1-203ENST00000361654 PSMA5P28066 241 aa13.2□□□□□ -0.3
CLIP1-203ENST00000361654 TNNT3P45378 269 aaPredicted RBP13.2□□□□□ -0.3
CLIP1-203ENST00000361654 CCDC158Q5M9N0 1113 aa13.2□□□□□ -0.3
CLIP1-203ENST00000361654 CDK5RAP3Q96JB5 506 aa13.2□□□□□ -0.3
CLIP1-203ENST00000361654 CABP2Q9NPB3 220 aa13.2□□□□□ -0.3
CLIP1-203ENST00000361654 TMOD2Q9NZR1 351 aa13.2□□□□□ -0.3
CLIP1-203ENST00000361654 CDR1P51861 262 aa13.2□□□□□ -0.3
CLIP1-203ENST00000361654 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.2□□□□□ -0.34e-6■■□□□ 12.7
CLIP1-203ENST00000361654 CCDC173Q0VFZ6 552 aa13.19□□□□□ -0.3
CLIP1-203ENST00000361654 ERC1Q8IUD2 1116 aa13.19□□□□□ -0.3
CLIP1-203ENST00000361654 FSD1Q9BTV5 496 aa13.19□□□□□ -0.3
CLIP1-203ENST00000361654 HIP1O00291 1037 aa13.18□□□□□ -0.3
CLIP1-203ENST00000361654 NAP1L1P55209 391 aaKnown RBP13.18□□□□□ -0.3
CLIP1-203ENST00000361654 ATP2B2Q01814 1243 aa13.18□□□□□ -0.3
CLIP1-203ENST00000361654 NACAP1Q9BZK3 213 aa13.18□□□□□ -0.3
CLIP1-203ENST00000361654 VPS37CA5D8V6 355 aaPredicted RBP13.18□□□□□ -0.3
CLIP1-203ENST00000361654 TXLNAP40222 546 aa13.18□□□□□ -0.3
CLIP1-203ENST00000361654 CNTROBQ8N137 903 aa13.18□□□□□ -0.3
CLIP1-203ENST00000361654 MPHOSPH8Q99549 860 aa13.18□□□□□ -0.3
CLIP1-203ENST00000361654 AAMPQ13685 434 aa13.18□□□□□ -0.3
CLIP1-203ENST00000361654 FAM161AQ3B820 660 aa13.18□□□□□ -0.3
CLIP1-203ENST00000361654 FOXD4L6Q3SYB3 417 aaPredicted RBP13.18□□□□□ -0.3
CLIP1-203ENST00000361654 FOXD4L3Q6VB84 417 aaPredicted RBP13.18□□□□□ -0.3
CLIP1-203ENST00000361654 FYCO1Q9BQS8 1478 aa13.17□□□□□ -0.3
CLIP1-203ENST00000361654 KRT18P05783 430 aaKnown RBP13.17□□□□□ -0.3
CLIP1-203ENST00000361654 TTC39AQ5SRH9 613 aa13.17□□□□□ -0.3
CLIP1-203ENST00000361654 SLC52A1Q9NWF4 448 aa13.17□□□□□ -0.3
CLIP1-203ENST00000361654 RRBP1Q9P2E9 1410 aaKnown RBP13.17□□□□□ -0.3
CLIP1-203ENST00000361654 MPHOSPH10O00566 681 aaKnown RBP13.16□□□□□ -0.3
CLIP1-203ENST00000361654 SETQ01105 290 aaPredicted RBP13.16□□□□□ -0.3
CLIP1-203ENST00000361654 TMEM132EQ6IEE7 984 aa13.16□□□□□ -0.3
CLIP1-203ENST00000361654 OLFM4Q6UX06 510 aa13.16□□□□□ -0.3
CLIP1-203ENST00000361654 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-203ENST00000361654 HSP90AB2PQ58FF8 381 aa13.15□□□□□ -0.3
CLIP1-203ENST00000361654 SASS6Q6UVJ0 657 aa13.15□□□□□ -0.3
CLIP1-203ENST00000361654 DMRT2Q9Y5R5 561 aa13.15□□□□□ -0.3
CLIP1-203ENST00000361654 SYCP1Q15431 976 aa13.15□□□□□ -0.3
CLIP1-203ENST00000361654 ZSCAN29Q8IWY8 852 aaPredicted RBP13.15□□□□□ -0.3
CLIP1-203ENST00000361654 ZNF530Q6P9A1 599 aaPredicted RBP13.15□□□□□ -0.31
CLIP1-203ENST00000361654 AFAP1Q8N556 730 aa13.14□□□□□ -0.31
CLIP1-203ENST00000361654 ARHGAP5Q13017 1502 aa13.14□□□□□ -0.31
CLIP1-203ENST00000361654 SURF6O75683 361 aaKnown RBP13.14□□□□□ -0.31
CLIP1-203ENST00000361654 ZSCAN25Q6NSZ9 544 aa13.14□□□□□ -0.31
CLIP1-203ENST00000361654 DNAJC2Q99543 621 aaKnown RBP13.14□□□□□ -0.31
CLIP1-203ENST00000361654 SYNJ2O15056 1496 aa13.13□□□□□ -0.31
CLIP1-203ENST00000361654 RRP12Q5JTH9 1297 aaKnown RBP13.13□□□□□ -0.31
CLIP1-203ENST00000361654 SOGA3Q5TF21 947 aa13.13□□□□□ -0.31
CLIP1-203ENST00000361654 RSPH6AQ9H0K4 717 aa13.13□□□□□ -0.31
CLIP1-203ENST00000361654 MTHFSP49914 203 aa13.13□□□□□ -0.31
CLIP1-203ENST00000361654 HOMER1Q86YM7 354 aa13.13□□□□□ -0.31
CLIP1-203ENST00000361654 ZNF652Q9Y2D9 606 aa13.13□□□□□ -0.31
CLIP1-203ENST00000361654 NAT10Q9H0A0 1025 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms