RNA–Protein interactions for RNA: ENST00000358025.7

SYNE2-204, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SYNE2, Length 21,842 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-204ENST00000358025 DDX11Q96FC9 970 aa4.98□□□□□ -1.61
SYNE2-204ENST00000358025 SRRTQ9BXP5 876 aaKnown RBP4.98□□□□□ -1.61
SYNE2-204ENST00000358025 ZNF445P59923 1031 aa4.98□□□□□ -1.61
SYNE2-204ENST00000358025 AK7Q96M32 723 aa4.98□□□□□ -1.61
SYNE2-204ENST00000358025 K7ELQ4 463 aaPredicted RBP4.98□□□□□ -1.61
SYNE2-204ENST00000358025 ZNF500O60304 480 aaPredicted RBP4.98□□□□□ -1.61
SYNE2-204ENST00000358025 AEBP1Q8IUX7 1158 aa4.98□□□□□ -1.61
SYNE2-204ENST00000358025 NCOA2Q15596 1464 aa4.98□□□□□ -1.61
SYNE2-204ENST00000358025 WDR33Q9C0J8 1336 aaKnown RBP4.98□□□□□ -1.61
SYNE2-204ENST00000358025 CGNQ9P2M7 1197 aaKnown RBP4.98□□□□□ -1.61
SYNE2-204ENST00000358025 NUP160Q12769 1436 aa4.98□□□□□ -1.61
SYNE2-204ENST00000358025 PSMA5P28066 241 aa4.97□□□□□ -1.61
SYNE2-204ENST00000358025 PPP1R9BQ96SB3 815 aa4.97□□□□□ -1.61
SYNE2-204ENST00000358025 U2AF1L5P0DN76 240 aaPredicted RBP4.97□□□□□ -1.61
SYNE2-204ENST00000358025 U2AF1Q01081 240 aaKnown RBP eCLIP4.97□□□□□ -1.61
SYNE2-204ENST00000358025 CCDC70Q6NSX1 233 aa4.97□□□□□ -1.61
SYNE2-204ENST00000358025 NKTRP30414 1462 aaKnown RBP4.97□□□□□ -1.61
SYNE2-204ENST00000358025 UTP14CQ5TAP6 766 aaKnown RBP4.97□□□□□ -1.61
SYNE2-204ENST00000358025 APAF1O14727 1248 aa4.97□□□□□ -1.61
SYNE2-204ENST00000358025 USP8P40818 1118 aa4.97□□□□□ -1.61
SYNE2-204ENST00000358025 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.97□□□□□ -1.61
SYNE2-204ENST00000358025 HDGFL2Q7Z4V5 671 aaPredicted RBP4.97□□□□□ -1.61
SYNE2-204ENST00000358025 SOS1Q07889 1333 aaPredicted RBP4.97□□□□□ -1.61
SYNE2-204ENST00000358025 MFAP1P55081 439 aaKnown RBP4.97□□□□□ -1.61
SYNE2-204ENST00000358025 ATL3Q6DD88 541 aa4.97□□□□□ -1.61
SYNE2-204ENST00000358025 RPGRIP1LQ68CZ1 1315 aa4.97□□□□□ -1.61
SYNE2-204ENST00000358025 CCDC192P0DO97 292 aa4.97□□□□□ -1.61
SYNE2-204ENST00000358025 JAKMIP3Q5VZ66 844 aa4.97□□□□□ -1.61
SYNE2-204ENST00000358025 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.97□□□□□ -1.619e-6■■■□□ 18.9
SYNE2-204ENST00000358025 POLA1P09884 1462 aaPredicted RBP4.96□□□□□ -1.61
SYNE2-204ENST00000358025 SUPT6HQ7KZ85 1726 aaKnown RBP4.96□□□□□ -1.61
SYNE2-204ENST00000358025 USP25Q9UHP3 1055 aa4.96□□□□□ -1.61
SYNE2-204ENST00000358025 ANKRD1Q15327 319 aa4.96□□□□□ -1.61
SYNE2-204ENST00000358025 MCM3P25205 808 aa4.96□□□□□ -1.61
SYNE2-204ENST00000358025 ANKRD45Q5TZF3 282 aa4.96□□□□□ -1.61
SYNE2-204ENST00000358025 HMGB1P09429 215 aaKnown RBP4.96□□□□□ -1.62
SYNE2-204ENST00000358025 FCHSD2O94868 740 aa4.96□□□□□ -1.62
SYNE2-204ENST00000358025 GSDMDP57764 484 aa4.96□□□□□ -1.62
SYNE2-204ENST00000358025 GNAI1P63096 354 aa4.96□□□□□ -1.62
SYNE2-204ENST00000358025 EVC2Q86UK5 1308 aa4.96□□□□□ -1.62
SYNE2-204ENST00000358025 ARHGEF12Q9NZN5 1544 aa4.96□□□□□ -1.62
SYNE2-204ENST00000358025 MVPQ14764 893 aaKnown RBP4.96□□□□□ -1.62
SYNE2-204ENST00000358025 GAPVD1Q14C86 1478 aa4.96□□□□□ -1.62
SYNE2-204ENST00000358025 XRCC6P12956 609 aaKnown RBP eCLIP4.96□□□□□ -1.62
SYNE2-204ENST00000358025 KIF18AQ8NI77 898 aa4.96□□□□□ -1.62
SYNE2-204ENST00000358025 NOL7Q9UMY1 257 aaKnown RBP4.96□□□□□ -1.62
SYNE2-204ENST00000358025 ZNF771Q7L3S4 317 aaPredicted RBP4.96□□□□□ -1.62
SYNE2-204ENST00000358025 JPH4Q96JJ6 628 aa4.96□□□□□ -1.62
SYNE2-204ENST00000358025 ATF7IPQ6VMQ6 1270 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 DNAJC2Q99543 621 aaKnown RBP4.95□□□□□ -1.62
SYNE2-204ENST00000358025 SPATA31E1Q6ZUB1 1445 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 BRPF1P55201 1214 aaPredicted RBP4.95□□□□□ -1.62
SYNE2-204ENST00000358025 PARD3Q8TEW0 1356 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 UHRF1BP1Q6BDS2 1440 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 KDM2BQ8NHM5 1336 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 PPP2R1AP30153 589 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 KCNJ4P48050 445 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 ITPRIPQ8IWB1 547 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 MAPKBP1O60336 1514 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 TSR1Q2NL82 804 aaKnown RBP4.95□□□□□ -1.62
SYNE2-204ENST00000358025 SH2B1Q9NRF2 756 aaPredicted RBP4.95□□□□□ -1.62
SYNE2-204ENST00000358025 NBPF8Q3BBV2 869 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 TBC1D2Q9BYX2 928 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 CFAP45Q9UL16 551 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 NSD2O96028 1365 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 ZSCAN31Q96LW9 406 aaPredicted RBP4.95□□□□□ -1.62
SYNE2-204ENST00000358025 POLR3GO15318 223 aaPredicted RBP4.95□□□□□ -1.62
SYNE2-204ENST00000358025 TICAM2Q86XR7 235 aa4.95□□□□□ -1.62
SYNE2-204ENST00000358025 ZKSCAN1P17029 563 aaPredicted RBP4.95□□□□□ -1.62
SYNE2-204ENST00000358025 RTF1Q92541 710 aaKnown RBP4.95□□□□□ -1.62
SYNE2-204ENST00000358025 SCAND2PQ9GZW5 306 aaPredicted RBP4.94□□□□□ -1.62
SYNE2-204ENST00000358025 POTEB2H3BUK9 544 aa4.94□□□□□ -1.62
SYNE2-204ENST00000358025 BECN2A8MW95 431 aa4.94□□□□□ -1.62
SYNE2-204ENST00000358025 HSP90B2PQ58FF3 399 aa4.94□□□□□ -1.62
SYNE2-204ENST00000358025 RPAP2Q8IXW5 612 aaPredicted RBP4.94□□□□□ -1.62
SYNE2-204ENST00000358025 PODXL2Q9NZ53 605 aa4.94□□□□□ -1.62
SYNE2-204ENST00000358025 NPM1P06748 294 aaKnown RBP eCLIP4.94□□□□□ -1.62
SYNE2-204ENST00000358025 RARSP54136 660 aaKnown RBP4.94□□□□□ -1.62
SYNE2-204ENST00000358025 TIGD1Q96MW7 591 aa4.94□□□□□ -1.62
SYNE2-204ENST00000358025 GOLGA6L9A6NEM1 432 aa4.94□□□□□ -1.62
SYNE2-204ENST00000358025 GNAI3P08754 354 aa4.94□□□□□ -1.62
SYNE2-204ENST00000358025 DHX16O60231 1041 aaKnown RBP4.94□□□□□ -1.62
SYNE2-204ENST00000358025 ZKSCAN5Q9Y2L8 839 aa4.94□□□□□ -1.62
SYNE2-204ENST00000358025 GABPB1Q06547 395 aaPredicted RBP4.93□□□□□ -1.62
SYNE2-204ENST00000358025 OGFRQ9NZT2 677 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 ERC2O15083 957 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 RAB3GAP1Q15042 981 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 MYO1BO43795 1136 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 UQCRHLA0A096LP55 91 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 UQCRHP07919 91 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 STAG3Q9UJ98 1225 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 PDZRN3Q9UPQ7 1066 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 CCDC94Q9BW85 323 aaPredicted RBP4.93□□□□□ -1.62
SYNE2-204ENST00000358025 PPP6R1Q9UPN7 881 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 PES1O00541 588 aaKnown RBP4.93□□□□□ -1.62
SYNE2-204ENST00000358025 NUCB1Q02818 461 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 DEF6Q9H4E7 631 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 BIVM-ERCC5R4GMW8 1640 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 IVLP07476 585 aa4.93□□□□□ -1.62
SYNE2-204ENST00000358025 NBPF1Q3BBV0 1214 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms