RNA–Protein interactions for RNA: ENST00000355155.5

VPS13B-201, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 1 (best) BASIC

Gene VPS13B, Length 2,822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-201ENST00000355155 ANKRD36BQ8N2N9 1353 aa23.39■■□□□ 1.33
VPS13B-201ENST00000355155 ANKRD26Q9UPS8 1709 aa23.38■■□□□ 1.33
VPS13B-201ENST00000355155 ZBED9Q6R2W3 1325 aa23.37■■□□□ 1.33
VPS13B-201ENST00000355155 METP08581 1390 aa23.37■■□□□ 1.33
VPS13B-201ENST00000355155 NSD2O96028 1365 aa23.36■■□□□ 1.33
VPS13B-201ENST00000355155 CARD14Q9BXL6 1004 aa23.36■■□□□ 1.33
VPS13B-201ENST00000355155 XRN1Q8IZH2 1706 aaKnown RBP23.34■■□□□ 1.33
VPS13B-201ENST00000355155 CD163L1Q9NR16 1453 aa23.34■■□□□ 1.33
VPS13B-201ENST00000355155 BLMP54132 1417 aaPredicted RBP23.33■■□□□ 1.33
VPS13B-201ENST00000355155 TMC1Q8TDI8 760 aa23.32■■□□□ 1.32
VPS13B-201ENST00000355155 PRAM1Q96QH2 718 aa23.32■■□□□ 1.32
VPS13B-201ENST00000355155 CEBPAP49715 358 aaPredicted RBP23.32■■□□□ 1.32
VPS13B-201ENST00000355155 GTF3C3Q9Y5Q9 886 aa23.32■■□□□ 1.32
VPS13B-201ENST00000355155 ATP7BP35670 1465 aa23.31■■□□□ 1.32
VPS13B-201ENST00000355155 SETD1BQ9UPS6 1966 aaKnown RBP23.31■■□□□ 1.32
VPS13B-201ENST00000355155 THEMISQ8N1K5 641 aaPredicted RBP23.3■■□□□ 1.32
VPS13B-201ENST00000355155 PTCH1Q13635 1447 aa23.3■■□□□ 1.32
VPS13B-201ENST00000355155 NSD3Q9BZ95 1437 aa23.3■■□□□ 1.32
VPS13B-201ENST00000355155 LTKP29376 864 aa23.29■■□□□ 1.32
VPS13B-201ENST00000355155 HNRNPUQ00839 825 aaKnown RBP eCLIP23.29■■□□□ 1.32
VPS13B-201ENST00000355155 TOPAZ1Q8N9V7 1692 aa23.29■■□□□ 1.32
VPS13B-201ENST00000355155 PIK3R4Q99570 1358 aa23.29■■□□□ 1.32
VPS13B-201ENST00000355155 PPP2R1AP30153 589 aa23.28■■□□□ 1.32
VPS13B-201ENST00000355155 CC2D1BQ5T0F9 858 aaKnown RBP23.28■■□□□ 1.32
VPS13B-201ENST00000355155 TBX22Q9Y458 520 aa23.28■■□□□ 1.32
VPS13B-201ENST00000355155 FAM9BQ8IZU0 186 aa23.27■■□□□ 1.32
VPS13B-201ENST00000355155 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.26■■□□□ 1.31
VPS13B-201ENST00000355155 KIF20BQ96Q89 1820 aa23.26■■□□□ 1.31
VPS13B-201ENST00000355155 STK26Q9P289 416 aa23.26■■□□□ 1.31
VPS13B-201ENST00000355155 PLEKHH1Q9ULM0 1364 aa23.26■■□□□ 1.31
VPS13B-201ENST00000355155 AKAP12Q02952 1782 aa23.25■■□□□ 1.31
VPS13B-201ENST00000355155 POGKQ9P215 609 aa23.25■■□□□ 1.31
VPS13B-201ENST00000355155 EID1Q9Y6B2 187 aa23.25■■□□□ 1.31
VPS13B-201ENST00000355155 PTPRUQ92729 1446 aa23.25■■□□□ 1.31
VPS13B-201ENST00000355155 MON2Q7Z3U7 1717 aa23.24■■□□□ 1.31
VPS13B-201ENST00000355155 SLC12A5Q9H2X9 1139 aa23.24■■□□□ 1.31
VPS13B-201ENST00000355155 CDC42BPGQ6DT37 1551 aa23.23■■□□□ 1.31
VPS13B-201ENST00000355155 TXNDC2Q86VQ3 553 aa23.23■■□□□ 1.31
VPS13B-201ENST00000355155 POLR3AO14802 1390 aaPredicted RBP23.22■■□□□ 1.31
VPS13B-201ENST00000355155 CGNL1Q0VF96 1302 aa23.22■■□□□ 1.31
VPS13B-201ENST00000355155 A0A1W2PP64 1363 aa23.22■■□□□ 1.31
VPS13B-201ENST00000355155 SHPRHQ149N8 1683 aa23.21■■□□□ 1.31
VPS13B-201ENST00000355155 CPSF1Q10570 1443 aaKnown RBP23.2■■□□□ 1.31
VPS13B-201ENST00000355155 CDK19Q9BWU1 502 aa23.2■■□□□ 1.3
VPS13B-201ENST00000355155 CABP2Q9NPB3 220 aa23.2■■□□□ 1.3
VPS13B-201ENST00000355155 ROBO2Q9HCK4 1378 aa23.2■■□□□ 1.3
VPS13B-201ENST00000355155 CHD2O14647 1828 aaKnown RBP23.19■■□□□ 1.3
VPS13B-201ENST00000355155 SMG6Q86US8 1419 aaKnown RBP23.19■■□□□ 1.3
VPS13B-201ENST00000355155 MINK1Q8N4C8 1332 aaPredicted RBP23.19■■□□□ 1.3
VPS13B-201ENST00000355155 WASLO00401 505 aaPredicted RBP23.17■■□□□ 1.3
VPS13B-201ENST00000355155 ITSN1Q15811 1721 aa23.17■■□□□ 1.3
VPS13B-201ENST00000355155 NRKQ7Z2Y5 1582 aa23.16■■□□□ 1.3
VPS13B-201ENST00000355155 TERF2IPQ9NYB0 399 aa23.16■■□□□ 1.3
VPS13B-201ENST00000355155 WAPLQ7Z5K2 1190 aa23.15■■□□□ 1.3
VPS13B-201ENST00000355155 SRPK2P78362 688 aaKnown RBP23.14■■□□□ 1.3
VPS13B-201ENST00000355155 NWD1Q149M9 1564 aa23.11■■□□□ 1.29
VPS13B-201ENST00000355155 EDC4Q6P2E9 1401 aaKnown RBP23.11■■□□□ 1.29
VPS13B-201ENST00000355155 SAFB2Q14151 953 aaKnown RBP eCLIP23.1■■□□□ 1.29
VPS13B-201ENST00000355155 PPIP5K1Q6PFW1 1433 aa23.08■■□□□ 1.29
VPS13B-201ENST00000355155 FMN2Q9NZ56 1722 aa23.08■■□□□ 1.29
VPS13B-201ENST00000355155 PDE3BQ13370 1112 aa23.08■■□□□ 1.29
VPS13B-201ENST00000355155 HDGFL2Q7Z4V5 671 aaPredicted RBP23.08■■□□□ 1.29
VPS13B-201ENST00000355155 COL3A1P02461 1466 aaPredicted RBP23.06■■□□□ 1.28
VPS13B-201ENST00000355155 CNGB1Q14028 1251 aaPredicted RBP23.06■■□□□ 1.28
VPS13B-201ENST00000355155 MORC1Q86VD1 984 aa23.06■■□□□ 1.28
VPS13B-201ENST00000355155 ANKARQ7Z5J8 1434 aa23.05■■□□□ 1.28
VPS13B-201ENST00000355155 USP54Q70EL1 1684 aa23.05■■□□□ 1.28
VPS13B-201ENST00000355155 ANKLE2Q86XL3 938 aa23.04■■□□□ 1.28
VPS13B-201ENST00000355155 NGEFQ8N5V2 710 aa23.04■■□□□ 1.28
VPS13B-201ENST00000355155 NCBP3Q53F19 620 aaKnown RBP23.04■■□□□ 1.28
VPS13B-201ENST00000355155 CABP1Q9NZU7 370 aa23.04■■□□□ 1.28
VPS13B-201ENST00000355155 AMOTL2Q9Y2J4 779 aa23.04■■□□□ 1.28
VPS13B-201ENST00000355155 CCDC61Q9Y6R9 512 aa23.03■■□□□ 1.28
VPS13B-201ENST00000355155 NALCNQ8IZF0 1738 aa23.02■■□□□ 1.28
VPS13B-201ENST00000355155 PLEKHG3A1L390 1219 aa23.02■■□□□ 1.28
VPS13B-201ENST00000355155 FYB1O15117 783 aa23.02■■□□□ 1.28
VPS13B-201ENST00000355155 NUDT16Q96DE0 195 aaKnown RBP23.02■■□□□ 1.28
VPS13B-201ENST00000355155 NUDCQ9Y266 331 aa23.02■■□□□ 1.28
VPS13B-201ENST00000355155 PNPLA6Q8IY17 1366 aa23.01■■□□□ 1.27
VPS13B-201ENST00000355155 RNF123Q5XPI4 1314 aa23.01■■□□□ 1.27
VPS13B-201ENST00000355155 PRR36Q9H6K5 1346 aa23.01■■□□□ 1.27
VPS13B-201ENST00000355155 ADAMTS8Q9UP79 889 aa23.01■■□□□ 1.27
VPS13B-201ENST00000355155 NPHP4O75161 1426 aaPredicted RBP23.01■■□□□ 1.27
VPS13B-201ENST00000355155 LRRC7Q96NW7 1537 aa23■■□□□ 1.27
VPS13B-201ENST00000355155 SSH2Q76I76 1423 aa23■■□□□ 1.27
VPS13B-201ENST00000355155 BCANQ96GW7 911 aa23■■□□□ 1.27
VPS13B-201ENST00000355155 SLC26A8Q96RN1 970 aa23■■□□□ 1.27
VPS13B-201ENST00000355155 ZNF692Q9BU19 519 aaPredicted RBP23■■□□□ 1.27
VPS13B-201ENST00000355155 SENP3Q9H4L4 574 aaPredicted RBP22.99■■□□□ 1.27
VPS13B-201ENST00000355155 ZNF521Q96K83 1311 aa22.99■■□□□ 1.27
VPS13B-201ENST00000355155 IQSEC2Q5JU85 1478 aa22.99■■□□□ 1.27
VPS13B-201ENST00000355155 ERICH6BQ5W0A0 696 aa22.99■■□□□ 1.27
VPS13B-201ENST00000355155 NKTRP30414 1462 aaKnown RBP22.98■■□□□ 1.27
VPS13B-201ENST00000355155 WDR43Q15061 677 aaKnown RBP eCLIP22.98■■□□□ 1.273e-6■■■■□ 20.8
VPS13B-201ENST00000355155 SUPT16HQ9Y5B9 1047 aaKnown RBP22.98■■□□□ 1.27
VPS13B-201ENST00000355155 AATKQ6ZMQ8 1374 aa22.98■■□□□ 1.27
VPS13B-201ENST00000355155 USP6P35125 1406 aa22.92■■□□□ 1.26
VPS13B-201ENST00000355155 RGPD8O14715 1765 aaPredicted RBP22.92■■□□□ 1.26
VPS13B-201ENST00000355155 CFAP53Q96M91 514 aa22.92■■□□□ 1.26
VPS13B-201ENST00000355155 MTHFSP49914 203 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms