RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 DIP2AQ14689 1571 aa13.69□□□□□ -0.22
SYNE1-203ENST00000354674 TMF1P82094 1093 aa13.69□□□□□ -0.22
SYNE1-203ENST00000354674 EID1Q9Y6B2 187 aa13.69□□□□□ -0.22
SYNE1-203ENST00000354674 LRPPRCP42704 1394 aaKnown RBP13.68□□□□□ -0.22
SYNE1-203ENST00000354674 TRAK1Q9UPV9 953 aa13.68□□□□□ -0.22
SYNE1-203ENST00000354674 CENPJQ9HC77 1338 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-203ENST00000354674 PODXL2Q9NZ53 605 aa13.68□□□□□ -0.22
SYNE1-203ENST00000354674 ABCC11Q96J66 1382 aa13.68□□□□□ -0.22
SYNE1-203ENST00000354674 TECPR2O15040 1411 aa13.68□□□□□ -0.22
SYNE1-203ENST00000354674 METP08581 1390 aa13.67□□□□□ -0.22
SYNE1-203ENST00000354674 KDM4FA0A1W2PPD8 638 aa13.67□□□□□ -0.22
SYNE1-203ENST00000354674 CPS1P31327 1500 aa13.65□□□□□ -0.22
SYNE1-203ENST00000354674 SIRT1Q96EB6 747 aa13.65□□□□□ -0.22
SYNE1-203ENST00000354674 BRPF3Q9ULD4 1205 aa13.65□□□□□ -0.23
SYNE1-203ENST00000354674 TBX22Q9Y458 520 aa13.64□□□□□ -0.23
SYNE1-203ENST00000354674 CDCA8Q53HL2 280 aa13.64□□□□□ -0.23
SYNE1-203ENST00000354674 FAM135BQ49AJ0 1406 aa13.63□□□□□ -0.23
SYNE1-203ENST00000354674 MYOM1P52179 1685 aa13.63□□□□□ -0.23
SYNE1-203ENST00000354674 B4GALNT3Q6L9W6 998 aa13.63□□□□□ -0.23
SYNE1-203ENST00000354674 PUS7Q96PZ0 661 aaKnown RBP13.63□□□□□ -0.23
SYNE1-203ENST00000354674 SENP3Q9H4L4 574 aaPredicted RBP13.62□□□□□ -0.23
SYNE1-203ENST00000354674 LAS1LQ9Y4W2 734 aaKnown RBP13.62□□□□□ -0.23
SYNE1-203ENST00000354674 TULP4Q9NRJ4 1543 aa13.62□□□□□ -0.23
SYNE1-203ENST00000354674 ANKLE2Q86XL3 938 aa13.62□□□□□ -0.23
SYNE1-203ENST00000354674 STK26Q9P289 416 aa13.61□□□□□ -0.23
SYNE1-203ENST00000354674 PTPRUQ92729 1446 aa13.61□□□□□ -0.23
SYNE1-203ENST00000354674 PIK3R4Q99570 1358 aa13.6□□□□□ -0.23
SYNE1-203ENST00000354674 XRN1Q8IZH2 1706 aaKnown RBP13.6□□□□□ -0.23
SYNE1-203ENST00000354674 PRAM1Q96QH2 718 aa13.6□□□□□ -0.23
SYNE1-203ENST00000354674 VSIG10Q8N0Z9 540 aa13.59□□□□□ -0.23
SYNE1-203ENST00000354674 NPM2Q86SE8 214 aaKnown RBP13.59□□□□□ -0.23
SYNE1-203ENST00000354674 PTCH1Q13635 1447 aa13.58□□□□□ -0.24
SYNE1-203ENST00000354674 SLC26A8Q96RN1 970 aa13.58□□□□□ -0.24
SYNE1-203ENST00000354674 PLEKHH1Q9ULM0 1364 aa13.58□□□□□ -0.24
SYNE1-203ENST00000354674 POLR3GLQ9BT43 218 aa13.57□□□□□ -0.24
SYNE1-203ENST00000354674 EVC2Q86UK5 1308 aa13.57□□□□□ -0.24
SYNE1-203ENST00000354674 NPHP4O75161 1426 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-203ENST00000354674 PER1O15534 1290 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-203ENST00000354674 ROBO2Q9HCK4 1378 aa13.57□□□□□ -0.24
SYNE1-203ENST00000354674 ANP32CO43423 234 aa13.57□□□□□ -0.24
SYNE1-203ENST00000354674 ADGRB2O60241 1585 aa13.56□□□□□ -0.24
SYNE1-203ENST00000354674 CHD2O14647 1828 aaKnown RBP13.56□□□□□ -0.24
SYNE1-203ENST00000354674 POGKQ9P215 609 aa13.56□□□□□ -0.24
SYNE1-203ENST00000354674 A0A0U1RQG5 324 aaPredicted RBP13.56□□□□□ -0.24
SYNE1-203ENST00000354674 LMTK3Q96Q04 1460 aa13.56□□□□□ -0.24
SYNE1-203ENST00000354674 WAPLQ7Z5K2 1190 aa13.55□□□□□ -0.24
SYNE1-203ENST00000354674 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.54□□□□□ -0.24
SYNE1-203ENST00000354674 PANK3Q9H999 370 aa13.54□□□□□ -0.24
SYNE1-203ENST00000354674 AMOTL2Q9Y2J4 779 aa13.53□□□□□ -0.24
SYNE1-203ENST00000354674 PRKRIP1Q9H875 184 aaPredicted RBP13.53□□□□□ -0.24
SYNE1-203ENST00000354674 CCER2I3L3R5 266 aa13.53□□□□□ -0.24
SYNE1-203ENST00000354674 SAFB2Q14151 953 aaKnown RBP eCLIP13.53□□□□□ -0.24
SYNE1-203ENST00000354674 ZMYND15Q9H091 742 aa13.52□□□□□ -0.24
SYNE1-203ENST00000354674 MINK1Q8N4C8 1332 aaPredicted RBP13.52□□□□□ -0.24
SYNE1-203ENST00000354674 NCKAP5LQ9HCH0 1330 aa13.52□□□□□ -0.24
SYNE1-203ENST00000354674 NINLQ9Y2I6 1382 aa13.52□□□□□ -0.25
SYNE1-203ENST00000354674 NWD1Q149M9 1564 aa13.52□□□□□ -0.25
SYNE1-203ENST00000354674 ZBTB47Q9UFB7 747 aaPredicted RBP13.51□□□□□ -0.25
SYNE1-203ENST00000354674 ATAD2Q6PL18 1390 aa13.51□□□□□ -0.25
SYNE1-203ENST00000354674 KTN1Q86UP2 1357 aaKnown RBP13.51□□□□□ -0.25
SYNE1-203ENST00000354674 SENP3-EIF4A1A0A087X0R7 540 aa13.51□□□□□ -0.25
SYNE1-203ENST00000354674 NEFMP07197 916 aa13.51□□□□□ -0.25
SYNE1-203ENST00000354674 HNRNPUQ00839 825 aaKnown RBP eCLIP13.5□□□□□ -0.25
SYNE1-203ENST00000354674 CDK19Q9BWU1 502 aa13.5□□□□□ -0.25
SYNE1-203ENST00000354674 CABP2Q9NPB3 220 aa13.49□□□□□ -0.25
SYNE1-203ENST00000354674 NPC1L1Q9UHC9 1359 aa13.49□□□□□ -0.25
SYNE1-203ENST00000354674 WASLO00401 505 aaPredicted RBP13.49□□□□□ -0.25
SYNE1-203ENST00000354674 STRCQ7RTU9 1775 aa13.49□□□□□ -0.25
SYNE1-203ENST00000354674 USP32Q8NFA0 1604 aa13.49□□□□□ -0.25
SYNE1-203ENST00000354674 KCNA6P17658 529 aa13.48□□□□□ -0.25
SYNE1-203ENST00000354674 PARD3Q8TEW0 1356 aa13.48□□□□□ -0.25
SYNE1-203ENST00000354674 SLC12A5Q9H2X9 1139 aa13.47□□□□□ -0.25
SYNE1-203ENST00000354674 ANKRD36BQ8N2N9 1353 aa13.47□□□□□ -0.25
SYNE1-203ENST00000354674 CD163L1Q9NR16 1453 aa13.47□□□□□ -0.25
SYNE1-203ENST00000354674 CARD14Q9BXL6 1004 aa13.47□□□□□ -0.25
SYNE1-203ENST00000354674 SRPK2P78362 688 aaKnown RBP13.46□□□□□ -0.25
SYNE1-203ENST00000354674 AMER1Q5JTC6 1135 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-203ENST00000354674 TOPAZ1Q8N9V7 1692 aa13.46□□□□□ -0.25
SYNE1-203ENST00000354674 RALBP1Q15311 655 aa13.46□□□□□ -0.26
SYNE1-203ENST00000354674 ATP7BP35670 1465 aa13.45□□□□□ -0.26
SYNE1-203ENST00000354674 HSPA2P54652 639 aa13.45□□□□□ -0.26
SYNE1-203ENST00000354674 ANP32AP39687 249 aaKnown RBP13.44□□□□□ -0.26
SYNE1-203ENST00000354674 KNSTRNQ9Y448 316 aa13.44□□□□□ -0.26
SYNE1-203ENST00000354674 NKTRP30414 1462 aaKnown RBP13.44□□□□□ -0.26
SYNE1-203ENST00000354674 NALCNQ8IZF0 1738 aa13.44□□□□□ -0.26
SYNE1-203ENST00000354674 TMC1Q8TDI8 760 aa13.43□□□□□ -0.26
SYNE1-203ENST00000354674 CDC42BPGQ6DT37 1551 aa13.43□□□□□ -0.26
SYNE1-203ENST00000354674 A0A1W2PP64 1363 aa13.42□□□□□ -0.26
SYNE1-203ENST00000354674 FMN2Q9NZ56 1722 aa13.42□□□□□ -0.26
SYNE1-203ENST00000354674 STRCP1A6NGW2 1772 aa13.42□□□□□ -0.26
SYNE1-203ENST00000354674 CPSF1Q10570 1443 aaKnown RBP13.42□□□□□ -0.26
SYNE1-203ENST00000354674 NSD3Q9BZ95 1437 aa13.42□□□□□ -0.26
SYNE1-203ENST00000354674 PRR36Q9H6K5 1346 aa13.42□□□□□ -0.26
SYNE1-203ENST00000354674 NUDT16Q96DE0 195 aaKnown RBP13.41□□□□□ -0.26
SYNE1-203ENST00000354674 MYBBP1AQ9BQG0 1328 aaKnown RBP13.41□□□□□ -0.26
SYNE1-203ENST00000354674 CABP1Q9NZU7 370 aa13.41□□□□□ -0.26
SYNE1-203ENST00000354674 PPIP5K1Q6PFW1 1433 aa13.41□□□□□ -0.26
SYNE1-203ENST00000354674 CNGB1Q14028 1251 aaPredicted RBP13.4□□□□□ -0.26
SYNE1-203ENST00000354674 CCDC61Q9Y6R9 512 aa13.4□□□□□ -0.26
SYNE1-203ENST00000354674 AKAP12Q02952 1782 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms