RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 DLC1Q96QB1 1528 aa9.35□□□□□ -0.91
TRIM55-203ENST00000350034 EVC2Q86UK5 1308 aa9.34□□□□□ -0.91
TRIM55-203ENST00000350034 PPP2R1AP30153 589 aa9.34□□□□□ -0.91
TRIM55-203ENST00000350034 ABCC11Q96J66 1382 aa9.34□□□□□ -0.91
TRIM55-203ENST00000350034 NINLQ9Y2I6 1382 aa9.33□□□□□ -0.92
TRIM55-203ENST00000350034 NLRP1Q9C000 1473 aa9.33□□□□□ -0.92
TRIM55-203ENST00000350034 BLMP54132 1417 aaPredicted RBP9.32□□□□□ -0.92
TRIM55-203ENST00000350034 SMG6Q86US8 1419 aaKnown RBP9.32□□□□□ -0.92
TRIM55-203ENST00000350034 SETD1AO15047 1707 aaKnown RBP9.32□□□□□ -0.92
TRIM55-203ENST00000350034 HDGFP51858 240 aaKnown RBP9.32□□□□□ -0.92
TRIM55-203ENST00000350034 SIRT1Q96EB6 747 aa9.32□□□□□ -0.92
TRIM55-203ENST00000350034 SLC12A5Q9H2X9 1139 aa9.32□□□□□ -0.92
TRIM55-203ENST00000350034 TMEM2Q9UHN6 1383 aa9.32□□□□□ -0.92
TRIM55-203ENST00000350034 NRXN3Q9Y4C0 1643 aa9.31□□□□□ -0.92
TRIM55-203ENST00000350034 STK26Q9P289 416 aa9.31□□□□□ -0.92
TRIM55-203ENST00000350034 ANKRD36BQ8N2N9 1353 aa9.31□□□□□ -0.92
TRIM55-203ENST00000350034 USP32Q8NFA0 1604 aa9.31□□□□□ -0.92
TRIM55-203ENST00000350034 TECPR2O15040 1411 aa9.31□□□□□ -0.92
TRIM55-203ENST00000350034 ATAD2Q6PL18 1390 aa9.3□□□□□ -0.92
TRIM55-203ENST00000350034 PRAM1Q96QH2 718 aa9.3□□□□□ -0.92
TRIM55-203ENST00000350034 NSD3Q9BZ95 1437 aa9.3□□□□□ -0.92
TRIM55-203ENST00000350034 FKBP8Q14318 412 aa9.29□□□□□ -0.92
TRIM55-203ENST00000350034 FAM135BQ49AJ0 1406 aa9.29□□□□□ -0.92
TRIM55-203ENST00000350034 ARHGAP23Q9P227 1491 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 UBR1Q8IWV7 1749 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 NSD2O96028 1365 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 METP08581 1390 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 PLEKHG1Q9ULL1 1385 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 NEFLP07196 543 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 PLPPR3Q6T4P5 718 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 CABP2Q9NPB3 220 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 POGKQ9P215 609 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 NUDCQ9Y266 331 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 ADAMTS13Q76LX8 1427 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 RNF123Q5XPI4 1314 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 MED14O60244 1454 aa9.28□□□□□ -0.92
TRIM55-203ENST00000350034 STRCQ7RTU9 1775 aa9.27□□□□□ -0.92
TRIM55-203ENST00000350034 POLR3AO14802 1390 aaPredicted RBP9.27□□□□□ -0.93
TRIM55-203ENST00000350034 SLIT1O75093 1534 aa9.27□□□□□ -0.93
TRIM55-203ENST00000350034 CEBPAP49715 358 aaPredicted RBP9.27□□□□□ -0.93
TRIM55-203ENST00000350034 PDE3BQ13370 1112 aa9.27□□□□□ -0.93
TRIM55-203ENST00000350034 ERICH6BQ5W0A0 696 aa9.27□□□□□ -0.93
TRIM55-203ENST00000350034 DMRT2Q9Y5R5 561 aa9.27□□□□□ -0.93
TRIM55-203ENST00000350034 MINK1Q8N4C8 1332 aaPredicted RBP9.27□□□□□ -0.93
TRIM55-203ENST00000350034 CD163L1Q9NR16 1453 aa9.27□□□□□ -0.93
TRIM55-203ENST00000350034 PLEKHH1Q9ULM0 1364 aa9.26□□□□□ -0.93
TRIM55-203ENST00000350034 SAFB2Q14151 953 aaKnown RBP eCLIP9.26□□□□□ -0.93
TRIM55-203ENST00000350034 ADAMTS8Q9UP79 889 aa9.26□□□□□ -0.93
TRIM55-203ENST00000350034 CGNL1Q0VF96 1302 aa9.26□□□□□ -0.93
TRIM55-203ENST00000350034 C3P01024 1663 aa9.26□□□□□ -0.93
TRIM55-203ENST00000350034 RIMS1Q86UR5 1692 aaKnown RBP9.26□□□□□ -0.93
TRIM55-203ENST00000350034 CPS1P31327 1500 aa9.26□□□□□ -0.93
TRIM55-203ENST00000350034 KNDC1Q76NI1 1749 aa9.25□□□□□ -0.93
TRIM55-203ENST00000350034 LTKP29376 864 aa9.25□□□□□ -0.93
TRIM55-203ENST00000350034 SRPK2P78362 688 aaKnown RBP9.25□□□□□ -0.93
TRIM55-203ENST00000350034 WAPLQ7Z5K2 1190 aa9.25□□□□□ -0.93
TRIM55-203ENST00000350034 CDK19Q9BWU1 502 aa9.25□□□□□ -0.93
TRIM55-203ENST00000350034 A0A1W2PP64 1363 aa9.24□□□□□ -0.93
TRIM55-203ENST00000350034 MORC1Q86VD1 984 aa9.24□□□□□ -0.93
TRIM55-203ENST00000350034 FER1L4A9Z1Z3 1794 aa9.23□□□□□ -0.93
TRIM55-203ENST00000350034 UBAP1LF5GYI3 381 aa9.23□□□□□ -0.93
TRIM55-203ENST00000350034 WDR43Q15061 677 aaKnown RBP eCLIP9.23□□□□□ -0.93
TRIM55-203ENST00000350034 TXNDC2Q86VQ3 553 aa9.23□□□□□ -0.93
TRIM55-203ENST00000350034 TERF2IPQ9NYB0 399 aa9.23□□□□□ -0.93
TRIM55-203ENST00000350034 ZNF521Q96K83 1311 aa9.23□□□□□ -0.93
TRIM55-203ENST00000350034 ATP7BP35670 1465 aa9.22□□□□□ -0.93
TRIM55-203ENST00000350034 WASLO00401 505 aaPredicted RBP9.22□□□□□ -0.93
TRIM55-203ENST00000350034 HSPA1LP34931 641 aa9.22□□□□□ -0.93
TRIM55-203ENST00000350034 THEMISQ8N1K5 641 aaPredicted RBP9.22□□□□□ -0.93
TRIM55-203ENST00000350034 TBX22Q9Y458 520 aa9.22□□□□□ -0.93
TRIM55-203ENST00000350034 ROBO2Q9HCK4 1378 aa9.22□□□□□ -0.93
TRIM55-203ENST00000350034 CPSF1Q10570 1443 aaKnown RBP9.22□□□□□ -0.93
TRIM55-203ENST00000350034 FYB1O15117 783 aa9.21□□□□□ -0.94
TRIM55-203ENST00000350034 NGEFQ8N5V2 710 aa9.21□□□□□ -0.94
TRIM55-203ENST00000350034 CABP1Q9NZU7 370 aa9.21□□□□□ -0.94
TRIM55-203ENST00000350034 EID1Q9Y6B2 187 aa9.21□□□□□ -0.94
TRIM55-203ENST00000350034 PTPRUQ92729 1446 aa9.21□□□□□ -0.94
TRIM55-203ENST00000350034 ADGRB2O60241 1585 aa9.2□□□□□ -0.94
TRIM55-203ENST00000350034 HDGFL2Q7Z4V5 671 aaPredicted RBP9.2□□□□□ -0.94
TRIM55-203ENST00000350034 SENP3-EIF4A1A0A087X0R7 540 aa9.19□□□□□ -0.94
TRIM55-203ENST00000350034 MTHFSP49914 203 aa9.19□□□□□ -0.94
TRIM55-203ENST00000350034 DIP2AQ14689 1571 aa9.19□□□□□ -0.94
TRIM55-203ENST00000350034 PTCH1Q13635 1447 aa9.18□□□□□ -0.94
TRIM55-203ENST00000350034 SHPRHQ149N8 1683 aa9.18□□□□□ -0.94
TRIM55-203ENST00000350034 NCBP3Q53F19 620 aaKnown RBP9.18□□□□□ -0.94
TRIM55-203ENST00000350034 CDC42BPGQ6DT37 1551 aa9.18□□□□□ -0.94
TRIM55-203ENST00000350034 NUDT16Q96DE0 195 aaKnown RBP9.18□□□□□ -0.94
TRIM55-203ENST00000350034 CDCA7LQ96GN5 454 aa9.18□□□□□ -0.94
TRIM55-203ENST00000350034 BCANQ96GW7 911 aa9.18□□□□□ -0.94
TRIM55-203ENST00000350034 RGS17Q9UGC6 210 aaPredicted RBP9.18□□□□□ -0.94
TRIM55-203ENST00000350034 CCDC61Q9Y6R9 512 aa9.18□□□□□ -0.94
TRIM55-203ENST00000350034 CEP170BQ9Y4F5 1589 aaPredicted RBP9.17□□□□□ -0.94
TRIM55-203ENST00000350034 COL3A1P02461 1466 aaPredicted RBP9.17□□□□□ -0.94
TRIM55-203ENST00000350034 EDC4Q6P2E9 1401 aaKnown RBP9.17□□□□□ -0.94
TRIM55-203ENST00000350034 PNPLA6Q8IY17 1366 aa9.17□□□□□ -0.94
TRIM55-203ENST00000350034 PIK3R4Q99570 1358 aa9.17□□□□□ -0.94
TRIM55-203ENST00000350034 PRR36Q9H6K5 1346 aa9.17□□□□□ -0.94
TRIM55-203ENST00000350034 TRMT2AQ8IZ69 625 aaKnown RBP9.17□□□□□ -0.94
TRIM55-203ENST00000350034 CFAP53Q96M91 514 aa9.17□□□□□ -0.94
TRIM55-203ENST00000350034 GGNBP2Q9H3C7 697 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms