RNA–Protein interactions for RNA: ENST00000346495.6

TSPAN3-202, Transcript of tetraspanin 3, humanhuman

TSL 2 BASIC

Gene TSPAN3, Length 1,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-202ENST00000346495 MRS2Q9HD23 443 aa29.25■■■□□ 2.27
TSPAN3-202ENST00000346495 FAM135BQ49AJ0 1406 aa29.24■■■□□ 2.27
TSPAN3-202ENST00000346495 MINK1Q8N4C8 1332 aaPredicted RBP29.23■■■□□ 2.27
TSPAN3-202ENST00000346495 MYBBP1AQ9BQG0 1328 aaKnown RBP29.23■■■□□ 2.27
TSPAN3-202ENST00000346495 CCDC184Q52MB2 194 aa29.23■■■□□ 2.27
TSPAN3-202ENST00000346495 TBX22Q9Y458 520 aa29.21■■■□□ 2.27
TSPAN3-202ENST00000346495 NPC1L1Q9UHC9 1359 aa29.2■■■□□ 2.26
TSPAN3-202ENST00000346495 NINLQ9Y2I6 1382 aa29.19■■■□□ 2.26
TSPAN3-202ENST00000346495 WAPLQ7Z5K2 1190 aa29.19■■■□□ 2.26
TSPAN3-202ENST00000346495 TMC1Q8TDI8 760 aa29.19■■■□□ 2.26
TSPAN3-202ENST00000346495 ATAD2Q6PL18 1390 aa29.18■■■□□ 2.26
TSPAN3-202ENST00000346495 PLEKHH1Q9ULM0 1364 aa29.18■■■□□ 2.26
TSPAN3-202ENST00000346495 CC2D1BQ5T0F9 858 aaKnown RBP29.18■■■□□ 2.26
TSPAN3-202ENST00000346495 CABP2Q9NPB3 220 aa29.18■■■□□ 2.26
TSPAN3-202ENST00000346495 SRPK2P78362 688 aaKnown RBP29.17■■■□□ 2.26
TSPAN3-202ENST00000346495 AMER1Q5JTC6 1135 aaPredicted RBP29.17■■■□□ 2.26
TSPAN3-202ENST00000346495 SLC26A8Q96RN1 970 aa29.16■■■□□ 2.26
TSPAN3-202ENST00000346495 BRD4O60885 1362 aaPredicted RBP29.16■■■□□ 2.26
TSPAN3-202ENST00000346495 SLC12A5Q9H2X9 1139 aa29.16■■■□□ 2.26
TSPAN3-202ENST00000346495 ANKLE2Q86XL3 938 aa29.15■■■□□ 2.26
TSPAN3-202ENST00000346495 CDK19Q9BWU1 502 aa29.13■■■□□ 2.25
TSPAN3-202ENST00000346495 CARD14Q9BXL6 1004 aa29.12■■■□□ 2.25
TSPAN3-202ENST00000346495 NLRP13Q86W25 1043 aa29.12■■■□□ 2.25
TSPAN3-202ENST00000346495 PTPRUQ92729 1446 aa29.11■■■□□ 2.25
TSPAN3-202ENST00000346495 ANKRD36BQ8N2N9 1353 aa29.11■■■□□ 2.25
TSPAN3-202ENST00000346495 ROBO2Q9HCK4 1378 aa29.1■■■□□ 2.25
TSPAN3-202ENST00000346495 USP32Q8NFA0 1604 aa29.1■■■□□ 2.25
TSPAN3-202ENST00000346495 PIK3R4Q99570 1358 aa29.09■■■□□ 2.25
TSPAN3-202ENST00000346495 NSD3Q9BZ95 1437 aa29.08■■■□□ 2.25
TSPAN3-202ENST00000346495 FAM9BQ8IZU0 186 aa29.07■■■□□ 2.24
TSPAN3-202ENST00000346495 PTCH1Q13635 1447 aa29.06■■■□□ 2.24
TSPAN3-202ENST00000346495 XRN1Q8IZH2 1706 aaKnown RBP29.05■■■□□ 2.24
TSPAN3-202ENST00000346495 WASLO00401 505 aaPredicted RBP29.05■■■□□ 2.24
TSPAN3-202ENST00000346495 AMOTL2Q9Y2J4 779 aa29.05■■■□□ 2.24
TSPAN3-202ENST00000346495 ADGRB2O60241 1585 aa29.05■■■□□ 2.24
TSPAN3-202ENST00000346495 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.03■■■□□ 2.24
TSPAN3-202ENST00000346495 PNISRQ8TF01 805 aaKnown RBP29.02■■■□□ 2.24
TSPAN3-202ENST00000346495 TERF2IPQ9NYB0 399 aa29.02■■■□□ 2.24
TSPAN3-202ENST00000346495 A0A1W2PP64 1363 aa28.99■■■□□ 2.23
TSPAN3-202ENST00000346495 CGNL1Q0VF96 1302 aa28.98■■■□□ 2.23
TSPAN3-202ENST00000346495 PPP2R1AP30153 589 aa28.98■■■□□ 2.23
TSPAN3-202ENST00000346495 HNRNPUQ00839 825 aaKnown RBP eCLIP28.98■■■□□ 2.23
TSPAN3-202ENST00000346495 CHD2O14647 1828 aaKnown RBP28.98■■■□□ 2.23
TSPAN3-202ENST00000346495 ATP7BP35670 1465 aa28.97■■■□□ 2.23
TSPAN3-202ENST00000346495 CD163L1Q9NR16 1453 aa28.97■■■□□ 2.23
TSPAN3-202ENST00000346495 NPHP4O75161 1426 aaPredicted RBP28.97■■■□□ 2.23
TSPAN3-202ENST00000346495 HDGFL2Q7Z4V5 671 aaPredicted RBP28.97■■■□□ 2.23
TSPAN3-202ENST00000346495 NSD2O96028 1365 aa28.96■■■□□ 2.23
TSPAN3-202ENST00000346495 CABP1Q9NZU7 370 aa28.95■■■□□ 2.23
TSPAN3-202ENST00000346495 NUDT16Q96DE0 195 aaKnown RBP28.92■■■□□ 2.22
TSPAN3-202ENST00000346495 PPIP5K1Q6PFW1 1433 aa28.91■■■□□ 2.22
TSPAN3-202ENST00000346495 KCNA6P17658 529 aa28.9■■■□□ 2.22
TSPAN3-202ENST00000346495 MORC1Q86VD1 984 aa28.9■■■□□ 2.22
TSPAN3-202ENST00000346495 CCDC61Q9Y6R9 512 aa28.9■■■□□ 2.22
TSPAN3-202ENST00000346495 ANKRD26Q9UPS8 1709 aa28.87■■■□□ 2.21
TSPAN3-202ENST00000346495 NCKAP5LQ9HCH0 1330 aa28.87■■■□□ 2.21
TSPAN3-202ENST00000346495 CDC42BPGQ6DT37 1551 aa28.87■■■□□ 2.21
TSPAN3-202ENST00000346495 TOPAZ1Q8N9V7 1692 aa28.86■■■□□ 2.21
TSPAN3-202ENST00000346495 KDM4FA0A1W2PPD8 638 aa28.86■■■□□ 2.21
TSPAN3-202ENST00000346495 CPSF1Q10570 1443 aaKnown RBP28.85■■■□□ 2.21
TSPAN3-202ENST00000346495 ITSN1Q15811 1721 aa28.85■■■□□ 2.21
TSPAN3-202ENST00000346495 KIF20BQ96Q89 1820 aa28.85■■■□□ 2.21
TSPAN3-202ENST00000346495 PRR36Q9H6K5 1346 aa28.84■■■□□ 2.21
TSPAN3-202ENST00000346495 AKAP12Q02952 1782 aa28.84■■■□□ 2.21
TSPAN3-202ENST00000346495 INSRP06213 1382 aa28.83■■■□□ 2.21
TSPAN3-202ENST00000346495 MON2Q7Z3U7 1717 aa28.82■■■□□ 2.2
TSPAN3-202ENST00000346495 ZBED9Q6R2W3 1325 aa28.82■■■□□ 2.2
TSPAN3-202ENST00000346495 EDC4Q6P2E9 1401 aaKnown RBP28.8■■■□□ 2.2
TSPAN3-202ENST00000346495 NWD1Q149M9 1564 aa28.79■■■□□ 2.2
TSPAN3-202ENST00000346495 FYB1O15117 783 aa28.78■■■□□ 2.2
TSPAN3-202ENST00000346495 ZNF692Q9BU19 519 aaPredicted RBP28.78■■■□□ 2.2
TSPAN3-202ENST00000346495 POLR3AO14802 1390 aaPredicted RBP28.76■■■□□ 2.19
TSPAN3-202ENST00000346495 FMN2Q9NZ56 1722 aa28.76■■■□□ 2.19
TSPAN3-202ENST00000346495 PLEKHG3A1L390 1219 aa28.76■■■□□ 2.19
TSPAN3-202ENST00000346495 NALCNQ8IZF0 1738 aa28.75■■■□□ 2.19
TSPAN3-202ENST00000346495 GGNBP2Q9H3C7 697 aa28.75■■■□□ 2.19
TSPAN3-202ENST00000346495 ANKARQ7Z5J8 1434 aa28.75■■■□□ 2.19
TSPAN3-202ENST00000346495 WDR43Q15061 677 aaKnown RBP eCLIP28.74■■■□□ 2.19
TSPAN3-202ENST00000346495 BLMP54132 1417 aaPredicted RBP28.73■■■□□ 2.19
TSPAN3-202ENST00000346495 TNNT2P45379 298 aaPredicted RBP28.72■■■□□ 2.19
TSPAN3-202ENST00000346495 RGPD8O14715 1765 aaPredicted RBP28.71■■■□□ 2.19
TSPAN3-202ENST00000346495 NUTM2FA1L443 756 aa28.71■■■□□ 2.19
TSPAN3-202ENST00000346495 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.7■■■□□ 2.19
TSPAN3-202ENST00000346495 NKTRP30414 1462 aaKnown RBP28.7■■■□□ 2.18
TSPAN3-202ENST00000346495 LMTK3Q96Q04 1460 aa28.69■■■□□ 2.18
TSPAN3-202ENST00000346495 ADGRL3Q9HAR2 1447 aa28.68■■■□□ 2.18
TSPAN3-202ENST00000346495 NRKQ7Z2Y5 1582 aa28.68■■■□□ 2.18
TSPAN3-202ENST00000346495 ACEP12821 1306 aa28.68■■■□□ 2.18
TSPAN3-202ENST00000346495 ADAMTS8Q9UP79 889 aa28.68■■■□□ 2.18
TSPAN3-202ENST00000346495 GTF3C3Q9Y5Q9 886 aa28.67■■■□□ 2.18
TSPAN3-202ENST00000346495 MTHFSP49914 203 aa28.66■■■□□ 2.18
TSPAN3-202ENST00000346495 CFAP53Q96M91 514 aa28.66■■■□□ 2.18
TSPAN3-202ENST00000346495 HSPA2P54652 639 aa28.65■■■□□ 2.18
TSPAN3-202ENST00000346495 SCAF1Q9H7N4 1312 aaKnown RBP28.65■■■□□ 2.18
TSPAN3-202ENST00000346495 USP6P35125 1406 aa28.64■■■□□ 2.18
TSPAN3-202ENST00000346495 SHPRHQ149N8 1683 aa28.63■■■□□ 2.17
TSPAN3-202ENST00000346495 NME9Q86XW9 330 aa28.61■■■□□ 2.17
TSPAN3-202ENST00000346495 TTC21BQ7Z4L5 1316 aa28.6■■■□□ 2.17
TSPAN3-202ENST00000346495 PROSER2Q86WR7 435 aaPredicted RBP28.59■■■□□ 2.17
TSPAN3-202ENST00000346495 NGDNQ8NEJ9 315 aaKnown RBP28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms