RNA–Protein interactions for RNA: ENST00000345617.7

HDAC4-201, Transcript of histone deacetylase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC4, Length 8,976 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-201ENST00000345617 FOXD4L3Q6VB84 417 aaPredicted RBP23.2■■□□□ 1.3
HDAC4-201ENST00000345617 FILIP1LQ4L180 1135 aa23.19■■□□□ 1.3
HDAC4-201ENST00000345617 TRIM34Q9BYJ4 488 aa23.19■■□□□ 1.3
HDAC4-201ENST00000345617 STK26Q9P289 416 aa23.19■■□□□ 1.3
HDAC4-201ENST00000345617 AMPHP49418 695 aa23.18■■□□□ 1.3
HDAC4-201ENST00000345617 EVC2Q86UK5 1308 aa23.18■■□□□ 1.3
HDAC4-201ENST00000345617 KIF2AO00139 706 aaPredicted RBP23.18■■□□□ 1.3
HDAC4-201ENST00000345617 CDC45O75419 566 aa23.18■■□□□ 1.3
HDAC4-201ENST00000345617 CCDC192P0DO97 292 aa23.18■■□□□ 1.3
HDAC4-201ENST00000345617 TRAK2O60296 914 aa23.18■■□□□ 1.3
HDAC4-201ENST00000345617 SDF4Q9BRK5 362 aa23.18■■□□□ 1.3
HDAC4-201ENST00000345617 EZRP15311 586 aaKnown RBP23.18■■□□□ 1.3
HDAC4-201ENST00000345617 JMYQ8N9B5 988 aa23.17■■□□□ 1.3
HDAC4-201ENST00000345617 HIP1O00291 1037 aa23.17■■□□□ 1.3
HDAC4-201ENST00000345617 ZNHIT6Q9NWK9 470 aaKnown RBP23.17■■□□□ 1.3
HDAC4-201ENST00000345617 CNTLNQ9NXG0 1405 aa23.17■■□□□ 1.3
HDAC4-201ENST00000345617 CWC22Q9HCG8 908 aaKnown RBP23.16■■□□□ 1.3
HDAC4-201ENST00000345617 WIZO95785 1651 aa23.16■■□□□ 1.3
HDAC4-201ENST00000345617 HSP90AB3PQ58FF7 597 aa23.16■■□□□ 1.3
HDAC4-201ENST00000345617 DDX58O95786 925 aaKnown RBP23.16■■□□□ 1.3
HDAC4-201ENST00000345617 TXLNAP40222 546 aa23.15■■□□□ 1.3
HDAC4-201ENST00000345617 PODXL2Q9NZ53 605 aa23.15■■□□□ 1.3
HDAC4-201ENST00000345617 RALYLQ86SE5 291 aaKnown RBP23.15■■□□□ 1.3
HDAC4-201ENST00000345617 CCDC112Q8NEF3 446 aa23.15■■□□□ 1.3
HDAC4-201ENST00000345617 ZNF396Q96N95 335 aaPredicted RBP23.15■■□□□ 1.3
HDAC4-201ENST00000345617 NFXL1Q6ZNB6 911 aa23.15■■□□□ 1.3
HDAC4-201ENST00000345617 MIA2Q96PC5 1412 aa23.14■■□□□ 1.3
HDAC4-201ENST00000345617 L3MBTL2Q969R5 705 aa23.14■■□□□ 1.29
HDAC4-201ENST00000345617 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.14■■□□□ 1.291e-6■■■■■ 199.7
HDAC4-201ENST00000345617 DACH1Q9UI36 760 aa23.13■■□□□ 1.29
HDAC4-201ENST00000345617 SLC4A3P48751 1232 aa23.13■■□□□ 1.29
HDAC4-201ENST00000345617 C1orf141Q5JVX7 400 aa23.13■■□□□ 1.29
HDAC4-201ENST00000345617 PDILTQ8N807 584 aa23.13■■□□□ 1.29
HDAC4-201ENST00000345617 EXOC6Q8TAG9 804 aa23.13■■□□□ 1.29
HDAC4-201ENST00000345617 MAGEC2Q9UBF1 373 aaPredicted RBP23.12■■□□□ 1.29
HDAC4-201ENST00000345617 MCM3P25205 808 aa23.12■■□□□ 1.29
HDAC4-201ENST00000345617 DDX11Q96FC9 970 aa23.12■■□□□ 1.29
HDAC4-201ENST00000345617 GTF2E1P29083 439 aaPredicted RBP23.11■■□□□ 1.29
HDAC4-201ENST00000345617 BRD4O60885 1362 aaPredicted RBP23.11■■□□□ 1.29
HDAC4-201ENST00000345617 SMC2O95347 1197 aa23.1■■□□□ 1.29
HDAC4-201ENST00000345617 SART3Q15020 963 aaKnown RBP23.1■■□□□ 1.29
HDAC4-201ENST00000345617 SEPT7Q16181 437 aaKnown RBP23.1■■□□□ 1.29
HDAC4-201ENST00000345617 CBFA2T2O43439 604 aa23.1■■□□□ 1.29
HDAC4-201ENST00000345617 G3BP1Q13283 466 aaKnown RBP eCLIP23.09■■□□□ 1.29
HDAC4-201ENST00000345617 FOXD1Q16676 465 aa23.09■■□□□ 1.29
HDAC4-201ENST00000345617 COG6Q9Y2V7 657 aa23.09■■□□□ 1.29
HDAC4-201ENST00000345617 RAPGEF2Q9Y4G8 1499 aa23.09■■□□□ 1.29
HDAC4-201ENST00000345617 CNTROBQ8N137 903 aa23.08■■□□□ 1.29
HDAC4-201ENST00000345617 STIM1Q13586 685 aa23.08■■□□□ 1.29
HDAC4-201ENST00000345617 COG3Q96JB2 828 aa23.08■■□□□ 1.28
HDAC4-201ENST00000345617 ANKRD1Q15327 319 aa23.07■■□□□ 1.28
HDAC4-201ENST00000345617 EID1Q9Y6B2 187 aa23.07■■□□□ 1.28
HDAC4-201ENST00000345617 CTDP1Q9Y5B0 961 aaPredicted RBP23.07■■□□□ 1.28
HDAC4-201ENST00000345617 DHX57Q6P158 1386 aaKnown RBP23.07■■□□□ 1.28
HDAC4-201ENST00000345617 VPS37DQ86XT2 251 aa23.06■■□□□ 1.28
HDAC4-201ENST00000345617 LRRCC1Q9C099 1032 aa23.06■■□□□ 1.28
HDAC4-201ENST00000345617 GBP2P32456 591 aaPredicted RBP23.06■■□□□ 1.28
HDAC4-201ENST00000345617 SLC26A8Q96RN1 970 aa23.06■■□□□ 1.28
HDAC4-201ENST00000345617 PANK3Q9H999 370 aa23.06■■□□□ 1.28
HDAC4-201ENST00000345617 ENOX2Q16206 610 aaKnown RBP23.05■■□□□ 1.28
HDAC4-201ENST00000345617 EFCAB2Q5VUJ9 269 aa23.05■■□□□ 1.28
HDAC4-201ENST00000345617 UQCRHLA0A096LP55 91 aa23.05■■□□□ 1.28
HDAC4-201ENST00000345617 UQCRHP07919 91 aa23.05■■□□□ 1.28
HDAC4-201ENST00000345617 AEBP1Q8IUX7 1158 aa23.05■■□□□ 1.28
HDAC4-201ENST00000345617 MAP9Q49MG5 647 aa23.05■■□□□ 1.28
HDAC4-201ENST00000345617 TTC5Q8N0Z6 440 aa23.05■■□□□ 1.28
HDAC4-201ENST00000345617 NEFHP12036 1026 aa23.05■■□□□ 1.28
HDAC4-201ENST00000345617 SYCP1Q15431 976 aa23.05■■□□□ 1.28
HDAC4-201ENST00000345617 GBP3Q9H0R5 595 aa23.04■■□□□ 1.28
HDAC4-201ENST00000345617 RUNDC1Q96C34 613 aa23.04■■□□□ 1.28
HDAC4-201ENST00000345617 CIZ1Q9ULV3 898 aaPredicted RBP23.03■■□□□ 1.28
HDAC4-201ENST00000345617 STAC3Q96MF2 364 aa23.03■■□□□ 1.28
HDAC4-201ENST00000345617 SUPT6HQ7KZ85 1726 aaKnown RBP23.03■■□□□ 1.28
HDAC4-201ENST00000345617 GIMAP7Q8NHV1 300 aa23.03■■□□□ 1.28
HDAC4-201ENST00000345617 NGDNQ8NEJ9 315 aaKnown RBP23.03■■□□□ 1.28
HDAC4-201ENST00000345617 TEFQ10587 303 aa23.03■■□□□ 1.28
HDAC4-201ENST00000345617 PLIN1O60240 522 aa23.02■■□□□ 1.28
HDAC4-201ENST00000345617 CALCOCO1Q9P1Z2 691 aa23.02■■□□□ 1.28
HDAC4-201ENST00000345617 GOLGA6L10A0A0M3HER8 536 aa23.02■■□□□ 1.28
HDAC4-201ENST00000345617 GNAI1P63096 354 aa23.02■■□□□ 1.28
HDAC4-201ENST00000345617 PPFIBP1Q86W92 1011 aa23.02■■□□□ 1.28
HDAC4-201ENST00000345617 CCDC88BA6NC98 1476 aa23.02■■□□□ 1.28
HDAC4-201ENST00000345617 WDR33Q9C0J8 1336 aaKnown RBP23.01■■□□□ 1.27
HDAC4-201ENST00000345617 FEZ1Q99689 392 aa23.01■■□□□ 1.27
HDAC4-201ENST00000345617 CCDC181Q5TID7 509 aa23.01■■□□□ 1.27
HDAC4-201ENST00000345617 POLR3GO15318 223 aaPredicted RBP22.99■■□□□ 1.27
HDAC4-201ENST00000345617 GRPEL1Q9HAV7 217 aa22.99■■□□□ 1.27
HDAC4-201ENST00000345617 ST20-MTHFSA0A0A6YYL1 179 aa22.99■■□□□ 1.27
HDAC4-201ENST00000345617 PLCD4Q9BRC7 762 aa22.99■■□□□ 1.27
HDAC4-201ENST00000345617 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.99■■□□□ 1.272e-6■■■□□ 16.7
HDAC4-201ENST00000345617 CCDC7Q96M83 1385 aa22.98■■□□□ 1.27
HDAC4-201ENST00000345617 ZFYVE27Q5T4F4 411 aa22.98■■□□□ 1.27
HDAC4-201ENST00000345617 RRP7AQ9Y3A4 280 aaKnown RBP22.98■■□□□ 1.27
HDAC4-201ENST00000345617 PLEKHH2Q8IVE3 1493 aa22.98■■□□□ 1.27
HDAC4-201ENST00000345617 CCAR1Q8IX12 1150 aaKnown RBP22.98■■□□□ 1.27
HDAC4-201ENST00000345617 KIF21BO75037 1637 aa22.97■■□□□ 1.27
HDAC4-201ENST00000345617 BCL2L13Q9BXK5 485 aa22.97■■□□□ 1.27
HDAC4-201ENST00000345617 SHTN1A0MZ66 631 aa22.97■■□□□ 1.27
HDAC4-201ENST00000345617 SLC3A2P08195 630 aaKnown RBP22.96■■□□□ 1.27
HDAC4-201ENST00000345617 KRI1Q8N9T8 703 aaKnown RBP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms