RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 CCDC102AQ96A19 550 aa7.36□□□□□ -1.23
VCAN-203ENST00000343200 SEPT14Q6ZU15 432 aa7.36□□□□□ -1.23
VCAN-203ENST00000343200 KIF3CO14782 793 aa7.36□□□□□ -1.23
VCAN-203ENST00000343200 ROCK1Q13464 1354 aa7.36□□□□□ -1.23
VCAN-203ENST00000343200 GOLGA6L9A6NEM1 432 aa7.36□□□□□ -1.23
VCAN-203ENST00000343200 RNF168Q8IYW5 571 aaPredicted RBP7.36□□□□□ -1.23
VCAN-203ENST00000343200 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.36□□□□□ -1.23
VCAN-203ENST00000343200 PRDM10Q9NQV6 1147 aa7.36□□□□□ -1.23
VCAN-203ENST00000343200 APBB1O00213 710 aa7.36□□□□□ -1.23
VCAN-203ENST00000343200 PAXIP1Q6ZW49 1069 aaPredicted RBP7.36□□□□□ -1.23
VCAN-203ENST00000343200 TCHPQ9BT92 498 aa7.36□□□□□ -1.23
VCAN-203ENST00000343200 CENPJQ9HC77 1338 aaPredicted RBP7.35□□□□□ -1.23
VCAN-203ENST00000343200 SENP3-EIF4A1A0A087X0R7 540 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 LRRFIP1Q32MZ4 808 aaKnown RBP7.35□□□□□ -1.23
VCAN-203ENST00000343200 AKAP17AQ02040 695 aaKnown RBP7.35□□□□□ -1.23
VCAN-203ENST00000343200 DAAM2Q86T65 1068 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 GTPBP4Q9BZE4 634 aaKnown RBP7.35□□□□□ -1.23
VCAN-203ENST00000343200 DIDO1Q9BTC0 2240 aaKnown RBP7.35□□□□□ -1.23
VCAN-203ENST00000343200 GORABQ5T7V8 394 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 CRACR2AQ9BSW2 395 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 TCEAL9Q9UHQ7 104 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 KINO60870 393 aaKnown RBP7.35□□□□□ -1.23
VCAN-203ENST00000343200 LMOD3Q0VAK6 560 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 PAF1Q8N7H5 531 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 GBP3Q9H0R5 595 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 NBPF1Q3BBV0 1214 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 PDILTQ8N807 584 aa7.35□□□□□ -1.23
VCAN-203ENST00000343200 HMGB1P1B2RPK0 211 aaPredicted RBP7.34□□□□□ -1.23
VCAN-203ENST00000343200 DZIP1Q86YF9 867 aaKnown RBP7.34□□□□□ -1.23
VCAN-203ENST00000343200 MYH7BA7E2Y1 1941 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 TRAK2O60296 914 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 TRIM29Q14134 588 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 ZNHIT6Q9NWK9 470 aaKnown RBP7.34□□□□□ -1.23
VCAN-203ENST00000343200 CCDC192P0DO97 292 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 ZSCAN30Q86W11 494 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 ANKS4BQ8N8V4 417 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 CEP164Q9UPV0 1460 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 SMC2O95347 1197 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 STAMBPO95630 424 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 CFAP45Q9UL16 551 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 HEATR1Q9H583 2144 aaKnown RBP7.34□□□□□ -1.23
VCAN-203ENST00000343200 SPAG9O60271 1321 aaKnown RBP7.34□□□□□ -1.23
VCAN-203ENST00000343200 FOXD4L6Q3SYB3 417 aaPredicted RBP7.34□□□□□ -1.23
VCAN-203ENST00000343200 SH2D4BQ5SQS7 431 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 VPS53Q5VIR6 699 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 FOXD4L3Q6VB84 417 aaPredicted RBP7.34□□□□□ -1.23
VCAN-203ENST00000343200 GRPEL1Q9HAV7 217 aa7.34□□□□□ -1.23
VCAN-203ENST00000343200 ARHGAP35Q9NRY4 1499 aa7.34□□□□□ -1.24
VCAN-203ENST00000343200 TTC3P53804 2025 aa7.33□□□□□ -1.24
VCAN-203ENST00000343200 SMC1AQ14683 1233 aaKnown RBP7.33□□□□□ -1.24
VCAN-203ENST00000343200 CHIC2Q9UKJ5 165 aa7.33□□□□□ -1.24
VCAN-203ENST00000343200 ZKSCAN1P17029 563 aaPredicted RBP7.33□□□□□ -1.24
VCAN-203ENST00000343200 DNAJC21Q5F1R6 531 aaKnown RBP7.33□□□□□ -1.24
VCAN-203ENST00000343200 SMC4Q9NTJ3 1288 aa7.33□□□□□ -1.24
VCAN-203ENST00000343200 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.33□□□□□ -1.24
VCAN-203ENST00000343200 MAP2K1Q02750 393 aaPredicted RBP7.33□□□□□ -1.24
VCAN-203ENST00000343200 OFD1O75665 1012 aa7.33□□□□□ -1.24
VCAN-203ENST00000343200 P3H3Q8IVL6 736 aa7.33□□□□□ -1.24
VCAN-203ENST00000343200 NOL10Q9BSC4 688 aaKnown RBP7.33□□□□□ -1.24
VCAN-203ENST00000343200 BCL11BQ9C0K0 894 aaPredicted RBP7.33□□□□□ -1.24
VCAN-203ENST00000343200 GOLIM4O00461 696 aa7.33□□□□□ -1.24
VCAN-203ENST00000343200 PDCP20941 246 aa7.33□□□□□ -1.24
VCAN-203ENST00000343200 TMF1P82094 1093 aa7.33□□□□□ -1.24
VCAN-203ENST00000343200 TTC31Q49AM3 519 aaPredicted RBP7.33□□□□□ -1.24
VCAN-203ENST00000343200 TSPY4P0CV99 314 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 TSPY10P0CW01 314 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 PIP4K2AP48426 406 aaPredicted RBP7.32□□□□□ -1.24
VCAN-203ENST00000343200 FAM193AP78312 1265 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 CCDC181Q5TID7 509 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 RSRC1Q96IZ7 334 aaKnown RBP7.32□□□□□ -1.24
VCAN-203ENST00000343200 KIF15Q9NS87 1388 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 CBX1P83916 185 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 PPP4R3BQ5MIZ7 849 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 TAX1BP1Q86VP1 789 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 GIGYF2Q6Y7W6 1299 aaKnown RBP7.32□□□□□ -1.24
VCAN-203ENST00000343200 RTF1Q92541 710 aaKnown RBP7.32□□□□□ -1.24
VCAN-203ENST00000343200 ARID3CA6NKF2 412 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 RUFY2Q8WXA3 655 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 MARCH6O60337 910 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 SPECC1LQ69YQ0 1117 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 KIF20BQ96Q89 1820 aa7.32□□□□□ -1.24
VCAN-203ENST00000343200 AAMPQ13685 434 aa7.31□□□□□ -1.24
VCAN-203ENST00000343200 KIF1BO60333 1816 aa7.31□□□□□ -1.24
VCAN-203ENST00000343200 ZNF638Q14966 1978 aaKnown RBP7.31□□□□□ -1.24
VCAN-203ENST00000343200 SRPK2P78362 688 aaKnown RBP7.31□□□□□ -1.24
VCAN-203ENST00000343200 KIF18AQ8NI77 898 aa7.31□□□□□ -1.24
VCAN-203ENST00000343200 HSPA4P34932 840 aa7.31□□□□□ -1.24
VCAN-203ENST00000343200 UBXN4Q92575 508 aa7.31□□□□□ -1.24
VCAN-203ENST00000343200 POTEB2H3BUK9 544 aa7.31□□□□□ -1.24
VCAN-203ENST00000343200 CPLX2Q6PUV4 134 aaKnown RBP7.31□□□□□ -1.24
VCAN-203ENST00000343200 FHAD1B1AJZ9 1412 aa7.31□□□□□ -1.24
VCAN-203ENST00000343200 CCNB3Q8WWL7 1395 aa7.31□□□□□ -1.24
VCAN-203ENST00000343200 MCM5P33992 734 aa7.31□□□□□ -1.24
VCAN-203ENST00000343200 ARID1BQ8NFD5 2236 aaPredicted RBP7.31□□□□□ -1.24
VCAN-203ENST00000343200 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.31□□□□□ -1.24
VCAN-203ENST00000343200 V9GYY5 206 aaPredicted RBP7.31□□□□□ -1.24
VCAN-203ENST00000343200 PPP1R15AO75807 674 aaPredicted RBP7.3□□□□□ -1.24
VCAN-203ENST00000343200 TXLNAP40222 546 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 KRT222Q8N1A0 295 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 A0A1B0GUA9 196 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms