RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 METP08581 1390 aa23.81■■□□□ 1.4
CLDN4-201ENST00000340958 LRPPRCP42704 1394 aaKnown RBP23.81■■□□□ 1.4
CLDN4-201ENST00000340958 ARHGEF28Q8N1W1 1705 aaKnown RBP23.81■■□□□ 1.4
CLDN4-201ENST00000340958 CNGB1Q14028 1251 aaPredicted RBP23.8■■□□□ 1.4
CLDN4-201ENST00000340958 NKTRP30414 1462 aaKnown RBP23.8■■□□□ 1.4
CLDN4-201ENST00000340958 EVC2Q86UK5 1308 aa23.79■■□□□ 1.4
CLDN4-201ENST00000340958 PIK3R4Q99570 1358 aa23.79■■□□□ 1.4
CLDN4-201ENST00000340958 PTPRUQ92729 1446 aa23.78■■□□□ 1.4
CLDN4-201ENST00000340958 XRN1Q8IZH2 1706 aaKnown RBP23.76■■□□□ 1.39
CLDN4-201ENST00000340958 ABCC11Q96J66 1382 aa23.76■■□□□ 1.39
CLDN4-201ENST00000340958 PANK3Q9H999 370 aa23.76■■□□□ 1.39
CLDN4-201ENST00000340958 MINK1Q8N4C8 1332 aaPredicted RBP23.76■■□□□ 1.39
CLDN4-201ENST00000340958 RBM33Q96EV2 1170 aaKnown RBP23.75■■□□□ 1.39
CLDN4-201ENST00000340958 TMEM94Q12767 1356 aa23.74■■□□□ 1.39
CLDN4-201ENST00000340958 WAPLQ7Z5K2 1190 aa23.74■■□□□ 1.39
CLDN4-201ENST00000340958 PROSER2Q86WR7 435 aaPredicted RBP23.73■■□□□ 1.39
CLDN4-201ENST00000340958 TMC1Q8TDI8 760 aa23.73■■□□□ 1.39
CLDN4-201ENST00000340958 AMOTL2Q9Y2J4 779 aa23.73■■□□□ 1.39
CLDN4-201ENST00000340958 DLC1Q96QB1 1528 aa23.72■■□□□ 1.39
CLDN4-201ENST00000340958 CCER2I3L3R5 266 aa23.72■■□□□ 1.39
CLDN4-201ENST00000340958 SRPK2P78362 688 aaKnown RBP23.72■■□□□ 1.39
CLDN4-201ENST00000340958 UBAP1LF5GYI3 381 aa23.71■■□□□ 1.39
CLDN4-201ENST00000340958 YTHDC1Q96MU7 727 aaKnown RBP23.71■■□□□ 1.39
CLDN4-201ENST00000340958 PRKRIP1Q9H875 184 aaPredicted RBP23.71■■□□□ 1.39
CLDN4-201ENST00000340958 CABP2Q9NPB3 220 aa23.68■■□□□ 1.38
CLDN4-201ENST00000340958 KNSTRNQ9Y448 316 aa23.68■■□□□ 1.38
CLDN4-201ENST00000340958 PLEKHH1Q9ULM0 1364 aa23.67■■□□□ 1.38
CLDN4-201ENST00000340958 SIRT1Q96EB6 747 aa23.67■■□□□ 1.38
CLDN4-201ENST00000340958 PUS7Q96PZ0 661 aaKnown RBP23.66■■□□□ 1.38
CLDN4-201ENST00000340958 TULP4Q9NRJ4 1543 aa23.65■■□□□ 1.38
CLDN4-201ENST00000340958 TECPR2O15040 1411 aa23.65■■□□□ 1.38
CLDN4-201ENST00000340958 FAM135BQ49AJ0 1406 aa23.65■■□□□ 1.38
CLDN4-201ENST00000340958 CDK19Q9BWU1 502 aa23.64■■□□□ 1.38
CLDN4-201ENST00000340958 TOM1O60784 492 aa23.63■■□□□ 1.37
CLDN4-201ENST00000340958 KTN1Q86UP2 1357 aaKnown RBP23.63■■□□□ 1.37
CLDN4-201ENST00000340958 KNDC1Q76NI1 1749 aa23.63■■□□□ 1.37
CLDN4-201ENST00000340958 PER1O15534 1290 aaPredicted RBP23.63■■□□□ 1.37
CLDN4-201ENST00000340958 ROBO2Q9HCK4 1378 aa23.62■■□□□ 1.37
CLDN4-201ENST00000340958 CC2D1BQ5T0F9 858 aaKnown RBP23.61■■□□□ 1.37
CLDN4-201ENST00000340958 SLC12A5Q9H2X9 1139 aa23.61■■□□□ 1.37
CLDN4-201ENST00000340958 PTCH1Q13635 1447 aa23.61■■□□□ 1.37
CLDN4-201ENST00000340958 NCOA3Q9Y6Q9 1424 aa23.61■■□□□ 1.37
CLDN4-201ENST00000340958 RALBP1Q15311 655 aa23.61■■□□□ 1.37
CLDN4-201ENST00000340958 MSH6P52701 1360 aa23.61■■□□□ 1.37
CLDN4-201ENST00000340958 MYOM1P52179 1685 aa23.61■■□□□ 1.37
CLDN4-201ENST00000340958 ATAD2Q6PL18 1390 aa23.6■■□□□ 1.37
CLDN4-201ENST00000340958 PIP4K2BP78356 416 aa23.6■■□□□ 1.37
CLDN4-201ENST00000340958 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.6■■□□□ 1.37
CLDN4-201ENST00000340958 C14orf37Q86TY3 774 aa23.59■■□□□ 1.37
CLDN4-201ENST00000340958 SCAF1Q9H7N4 1312 aaKnown RBP23.58■■□□□ 1.37
CLDN4-201ENST00000340958 NALCNQ8IZF0 1738 aa23.58■■□□□ 1.36
CLDN4-201ENST00000340958 WASLO00401 505 aaPredicted RBP23.57■■□□□ 1.36
CLDN4-201ENST00000340958 MRS2Q9HD23 443 aa23.56■■□□□ 1.36
CLDN4-201ENST00000340958 NINLQ9Y2I6 1382 aa23.55■■□□□ 1.36
CLDN4-201ENST00000340958 C19orf44Q9H6X5 657 aa23.53■■□□□ 1.36
CLDN4-201ENST00000340958 TERF2IPQ9NYB0 399 aa23.52■■□□□ 1.36
CLDN4-201ENST00000340958 MYBBP1AQ9BQG0 1328 aaKnown RBP23.52■■□□□ 1.36
CLDN4-201ENST00000340958 ADGRL3Q9HAR2 1447 aa23.52■■□□□ 1.36
CLDN4-201ENST00000340958 CARD14Q9BXL6 1004 aa23.52■■□□□ 1.36
CLDN4-201ENST00000340958 ANKRD36BQ8N2N9 1353 aa23.5■■□□□ 1.35
CLDN4-201ENST00000340958 HDGFL2Q7Z4V5 671 aaPredicted RBP23.5■■□□□ 1.35
CLDN4-201ENST00000340958 CABP1Q9NZU7 370 aa23.5■■□□□ 1.35
CLDN4-201ENST00000340958 NSD3Q9BZ95 1437 aa23.5■■□□□ 1.35
CLDN4-201ENST00000340958 AMER1Q5JTC6 1135 aaPredicted RBP23.49■■□□□ 1.35
CLDN4-201ENST00000340958 ROBO1Q9Y6N7 1651 aa23.49■■□□□ 1.35
CLDN4-201ENST00000340958 DCCP43146 1447 aa23.49■■□□□ 1.35
CLDN4-201ENST00000340958 PARD3Q8TEW0 1356 aa23.49■■□□□ 1.35
CLDN4-201ENST00000340958 CENPBP07199 599 aaPredicted RBP23.49■■□□□ 1.35
CLDN4-201ENST00000340958 ATF3P18847 181 aa23.47■■□□□ 1.35
CLDN4-201ENST00000340958 CCDC184Q52MB2 194 aa23.47■■□□□ 1.35
CLDN4-201ENST00000340958 CADPS2Q86UW7 1296 aa23.47■■□□□ 1.35
CLDN4-201ENST00000340958 NUDT16Q96DE0 195 aaKnown RBP23.47■■□□□ 1.35
CLDN4-201ENST00000340958 SLAIN2Q9P270 581 aa23.47■■□□□ 1.35
CLDN4-201ENST00000340958 CGNL1Q0VF96 1302 aa23.45■■□□□ 1.34
CLDN4-201ENST00000340958 NUTM2FA1L443 756 aa23.45■■□□□ 1.34
CLDN4-201ENST00000340958 NPC1L1Q9UHC9 1359 aa23.44■■□□□ 1.34
CLDN4-201ENST00000340958 NLRP13Q86W25 1043 aa23.44■■□□□ 1.34
CLDN4-201ENST00000340958 FAM9BQ8IZU0 186 aa23.44■■□□□ 1.34
CLDN4-201ENST00000340958 CCDC61Q9Y6R9 512 aa23.44■■□□□ 1.34
CLDN4-201ENST00000340958 A0A1W2PP64 1363 aa23.44■■□□□ 1.34
CLDN4-201ENST00000340958 HSPA1LP34931 641 aa23.43■■□□□ 1.34
CLDN4-201ENST00000340958 PPIP5K1Q6PFW1 1433 aa23.43■■□□□ 1.34
CLDN4-201ENST00000340958 MST1RQ04912 1400 aa23.42■■□□□ 1.34
CLDN4-201ENST00000340958 ADGRB2O60241 1585 aa23.42■■□□□ 1.34
CLDN4-201ENST00000340958 CDC42BPGQ6DT37 1551 aa23.41■■□□□ 1.34
CLDN4-201ENST00000340958 BRD4O60885 1362 aaPredicted RBP23.41■■□□□ 1.34
CLDN4-201ENST00000340958 MORC1Q86VD1 984 aa23.4■■□□□ 1.34
CLDN4-201ENST00000340958 ATP7BP35670 1465 aa23.38■■□□□ 1.33
CLDN4-201ENST00000340958 PRR36Q9H6K5 1346 aa23.37■■□□□ 1.33
CLDN4-201ENST00000340958 PPP2R1AP30153 589 aa23.36■■□□□ 1.33
CLDN4-201ENST00000340958 CD163L1Q9NR16 1453 aa23.35■■□□□ 1.33
CLDN4-201ENST00000340958 C1orf167Q5SNV9 1468 aa23.35■■□□□ 1.33
CLDN4-201ENST00000340958 TNNT2P45379 298 aaPredicted RBP23.34■■□□□ 1.33
CLDN4-201ENST00000340958 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.34■■□□□ 1.33
CLDN4-201ENST00000340958 NSD2O96028 1365 aa23.34■■□□□ 1.33
CLDN4-201ENST00000340958 PHLPP1O60346 1717 aa23.34■■□□□ 1.33
CLDN4-201ENST00000340958 FMN2Q9NZ56 1722 aa23.34■■□□□ 1.33
CLDN4-201ENST00000340958 BRINP3Q76B58 766 aa23.33■■□□□ 1.33
CLDN4-201ENST00000340958 ZNF692Q9BU19 519 aaPredicted RBP23.33■■□□□ 1.32
CLDN4-201ENST00000340958 USP32Q8NFA0 1604 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms