RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 NPC1L1Q9UHC9 1359 aa21.09■□□□□ 0.97
LIMS1-202ENST00000338045 MRS2Q9HD23 443 aa21.09■□□□□ 0.97
LIMS1-202ENST00000338045 MYBBP1AQ9BQG0 1328 aaKnown RBP21.08■□□□□ 0.97
LIMS1-202ENST00000338045 AMER1Q5JTC6 1135 aaPredicted RBP21.08■□□□□ 0.97
LIMS1-202ENST00000338045 BCANQ96GW7 911 aa21.08■□□□□ 0.97
LIMS1-202ENST00000338045 KNSTRNQ9Y448 316 aa21.08■□□□□ 0.97
LIMS1-202ENST00000338045 DIP2AQ14689 1571 aa21.07■□□□□ 0.96
LIMS1-202ENST00000338045 TBX22Q9Y458 520 aa21.07■□□□□ 0.96
LIMS1-202ENST00000338045 PLEKHH1Q9ULM0 1364 aa21.06■□□□□ 0.96
LIMS1-202ENST00000338045 CNGB1Q14028 1251 aaPredicted RBP21.06■□□□□ 0.96
LIMS1-202ENST00000338045 MINK1Q8N4C8 1332 aaPredicted RBP21.06■□□□□ 0.96
LIMS1-202ENST00000338045 WAPLQ7Z5K2 1190 aa21.05■□□□□ 0.96
LIMS1-202ENST00000338045 NINLQ9Y2I6 1382 aa21.05■□□□□ 0.96
LIMS1-202ENST00000338045 BRD4O60885 1362 aaPredicted RBP21.04■□□□□ 0.96
LIMS1-202ENST00000338045 CC2D1BQ5T0F9 858 aaKnown RBP21.04■□□□□ 0.96
LIMS1-202ENST00000338045 CARD14Q9BXL6 1004 aa21.04■□□□□ 0.96
LIMS1-202ENST00000338045 SLC12A5Q9H2X9 1139 aa21.04■□□□□ 0.96
LIMS1-202ENST00000338045 CABP2Q9NPB3 220 aa21.04■□□□□ 0.96
LIMS1-202ENST00000338045 ATAD2Q6PL18 1390 aa21.04■□□□□ 0.96
LIMS1-202ENST00000338045 SLC26A8Q96RN1 970 aa21.02■□□□□ 0.96
LIMS1-202ENST00000338045 PTPRUQ92729 1446 aa21.01■□□□□ 0.95
LIMS1-202ENST00000338045 NLRP13Q86W25 1043 aa21.01■□□□□ 0.95
LIMS1-202ENST00000338045 SRPK2P78362 688 aaKnown RBP21.01■□□□□ 0.95
LIMS1-202ENST00000338045 TMC1Q8TDI8 760 aa21.01■□□□□ 0.95
LIMS1-202ENST00000338045 ANKRD36BQ8N2N9 1353 aa21■□□□□ 0.95
LIMS1-202ENST00000338045 ROBO2Q9HCK4 1378 aa21■□□□□ 0.95
LIMS1-202ENST00000338045 CDK19Q9BWU1 502 aa21■□□□□ 0.95
LIMS1-202ENST00000338045 ANKLE2Q86XL3 938 aa20.98■□□□□ 0.95
LIMS1-202ENST00000338045 USP32Q8NFA0 1604 aa20.98■□□□□ 0.95
LIMS1-202ENST00000338045 PIK3R4Q99570 1358 aa20.98■□□□□ 0.95
LIMS1-202ENST00000338045 PTCH1Q13635 1447 aa20.97■□□□□ 0.95
LIMS1-202ENST00000338045 NSD3Q9BZ95 1437 aa20.97■□□□□ 0.95
LIMS1-202ENST00000338045 PNISRQ8TF01 805 aaKnown RBP20.96■□□□□ 0.95
LIMS1-202ENST00000338045 ADGRB2O60241 1585 aa20.95■□□□□ 0.94
LIMS1-202ENST00000338045 WASLO00401 505 aaPredicted RBP20.95■□□□□ 0.94
LIMS1-202ENST00000338045 FAM9BQ8IZU0 186 aa20.95■□□□□ 0.94
LIMS1-202ENST00000338045 AMOTL2Q9Y2J4 779 aa20.94■□□□□ 0.94
LIMS1-202ENST00000338045 XRN1Q8IZH2 1706 aaKnown RBP20.94■□□□□ 0.94
LIMS1-202ENST00000338045 CD163L1Q9NR16 1453 aa20.93■□□□□ 0.94
LIMS1-202ENST00000338045 A0A1W2PP64 1363 aa20.92■□□□□ 0.94
LIMS1-202ENST00000338045 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.92■□□□□ 0.94
LIMS1-202ENST00000338045 PPP2R1AP30153 589 aa20.91■□□□□ 0.94
LIMS1-202ENST00000338045 HNRNPUQ00839 825 aaKnown RBP eCLIP20.9■□□□□ 0.94
LIMS1-202ENST00000338045 TERF2IPQ9NYB0 399 aa20.9■□□□□ 0.94
LIMS1-202ENST00000338045 CGNL1Q0VF96 1302 aa20.89■□□□□ 0.94
LIMS1-202ENST00000338045 ATP7BP35670 1465 aa20.89■□□□□ 0.93
LIMS1-202ENST00000338045 NSD2O96028 1365 aa20.88■□□□□ 0.93
LIMS1-202ENST00000338045 CABP1Q9NZU7 370 aa20.88■□□□□ 0.93
LIMS1-202ENST00000338045 NPHP4O75161 1426 aaPredicted RBP20.87■□□□□ 0.93
LIMS1-202ENST00000338045 CHD2O14647 1828 aaKnown RBP20.85■□□□□ 0.93
LIMS1-202ENST00000338045 HDGFL2Q7Z4V5 671 aaPredicted RBP20.85■□□□□ 0.93
LIMS1-202ENST00000338045 NUDT16Q96DE0 195 aaKnown RBP20.85■□□□□ 0.93
LIMS1-202ENST00000338045 KCNA6P17658 529 aa20.84■□□□□ 0.93
LIMS1-202ENST00000338045 CCDC61Q9Y6R9 512 aa20.84■□□□□ 0.93
LIMS1-202ENST00000338045 INSRP06213 1382 aa20.84■□□□□ 0.93
LIMS1-202ENST00000338045 CPSF1Q10570 1443 aaKnown RBP20.83■□□□□ 0.93
LIMS1-202ENST00000338045 PPIP5K1Q6PFW1 1433 aa20.83■□□□□ 0.93
LIMS1-202ENST00000338045 PRR36Q9H6K5 1346 aa20.82■□□□□ 0.92
LIMS1-202ENST00000338045 KDM4FA0A1W2PPD8 638 aa20.81■□□□□ 0.92
LIMS1-202ENST00000338045 CDC42BPGQ6DT37 1551 aa20.81■□□□□ 0.92
LIMS1-202ENST00000338045 ZBED9Q6R2W3 1325 aa20.81■□□□□ 0.92
LIMS1-202ENST00000338045 MORC1Q86VD1 984 aa20.81■□□□□ 0.92
LIMS1-202ENST00000338045 TOPAZ1Q8N9V7 1692 aa20.8■□□□□ 0.92
LIMS1-202ENST00000338045 NCKAP5LQ9HCH0 1330 aa20.79■□□□□ 0.92
LIMS1-202ENST00000338045 FYB1O15117 783 aa20.77■□□□□ 0.92
LIMS1-202ENST00000338045 ANKRD26Q9UPS8 1709 aa20.77■□□□□ 0.92
LIMS1-202ENST00000338045 EDC4Q6P2E9 1401 aaKnown RBP20.77■□□□□ 0.91
LIMS1-202ENST00000338045 MON2Q7Z3U7 1717 aa20.76■□□□□ 0.91
LIMS1-202ENST00000338045 POLR3AO14802 1390 aaPredicted RBP20.76■□□□□ 0.91
LIMS1-202ENST00000338045 PLEKHG3A1L390 1219 aa20.75■□□□□ 0.91
LIMS1-202ENST00000338045 NWD1Q149M9 1564 aa20.75■□□□□ 0.91
LIMS1-202ENST00000338045 AKAP12Q02952 1782 aa20.75■□□□□ 0.91
LIMS1-202ENST00000338045 BLMP54132 1417 aaPredicted RBP20.75■□□□□ 0.91
LIMS1-202ENST00000338045 ZNF692Q9BU19 519 aaPredicted RBP20.74■□□□□ 0.91
LIMS1-202ENST00000338045 KIF20BQ96Q89 1820 aa20.74■□□□□ 0.91
LIMS1-202ENST00000338045 SCAF1Q9H7N4 1312 aaKnown RBP20.73■□□□□ 0.91
LIMS1-202ENST00000338045 ITSN1Q15811 1721 aa20.73■□□□□ 0.91
LIMS1-202ENST00000338045 GGNBP2Q9H3C7 697 aa20.73■□□□□ 0.91
LIMS1-202ENST00000338045 ANKARQ7Z5J8 1434 aa20.72■□□□□ 0.91
LIMS1-202ENST00000338045 NKTRP30414 1462 aaKnown RBP20.71■□□□□ 0.91
LIMS1-202ENST00000338045 NALCNQ8IZF0 1738 aa20.7■□□□□ 0.9
LIMS1-202ENST00000338045 FMN2Q9NZ56 1722 aa20.7■□□□□ 0.9
LIMS1-202ENST00000338045 ADAMTS8Q9UP79 889 aa20.7■□□□□ 0.9
LIMS1-202ENST00000338045 GTF3C3Q9Y5Q9 886 aa20.7■□□□□ 0.9
LIMS1-202ENST00000338045 TNNT2P45379 298 aaPredicted RBP20.69■□□□□ 0.9
LIMS1-202ENST00000338045 WDR43Q15061 677 aaKnown RBP eCLIP20.69■□□□□ 0.9
LIMS1-202ENST00000338045 LMTK3Q96Q04 1460 aa20.69■□□□□ 0.9
LIMS1-202ENST00000338045 ACEP12821 1306 aa20.68■□□□□ 0.9
LIMS1-202ENST00000338045 ADGRL3Q9HAR2 1447 aa20.68■□□□□ 0.9
LIMS1-202ENST00000338045 MTHFSP49914 203 aa20.68■□□□□ 0.9
LIMS1-202ENST00000338045 NRKQ7Z2Y5 1582 aa20.68■□□□□ 0.9
LIMS1-202ENST00000338045 NUTM2FA1L443 756 aa20.67■□□□□ 0.9
LIMS1-202ENST00000338045 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.67■□□□□ 0.9
LIMS1-202ENST00000338045 USP6P35125 1406 aa20.66■□□□□ 0.9
LIMS1-202ENST00000338045 SSH2Q76I76 1423 aa20.65■□□□□ 0.9
LIMS1-202ENST00000338045 SHPRHQ149N8 1683 aa20.65■□□□□ 0.9
LIMS1-202ENST00000338045 RGPD8O14715 1765 aaPredicted RBP20.65■□□□□ 0.9
LIMS1-202ENST00000338045 HSPA2P54652 639 aa20.64■□□□□ 0.9
LIMS1-202ENST00000338045 NME9Q86XW9 330 aa20.63■□□□□ 0.89
LIMS1-202ENST00000338045 CFAP53Q96M91 514 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms