RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 RUNDC1Q96C34 613 aa16.15■□□□□ 0.18
COL2A1-201ENST00000337299 IFT140Q96RY7 1462 aa16.15■□□□□ 0.18
COL2A1-201ENST00000337299 ZNF608Q9ULD9 1512 aaPredicted RBP16.15■□□□□ 0.18
COL2A1-201ENST00000337299 NEK4P51957 841 aa16.14■□□□□ 0.17
COL2A1-201ENST00000337299 REC8O95072 547 aa16.14■□□□□ 0.17
COL2A1-201ENST00000337299 FAM69CQ0P6D2 419 aa16.14■□□□□ 0.17
COL2A1-201ENST00000337299 CIZ1Q9ULV3 898 aaPredicted RBP16.14■□□□□ 0.17
COL2A1-201ENST00000337299 CDC45O75419 566 aa16.14■□□□□ 0.17
COL2A1-201ENST00000337299 EXOSC9Q06265 439 aaKnown RBP16.13■□□□□ 0.17
COL2A1-201ENST00000337299 CCDC27Q2M243 656 aa16.13■□□□□ 0.17
COL2A1-201ENST00000337299 PPP4R3BQ5MIZ7 849 aa16.13■□□□□ 0.17
COL2A1-201ENST00000337299 RBM27Q9P2N5 1060 aaKnown RBP16.13■□□□□ 0.17
COL2A1-201ENST00000337299 FAM177BA6PVY3 158 aa16.12■□□□□ 0.17
COL2A1-201ENST00000337299 FBXW7Q969H0 707 aa16.12■□□□□ 0.17
COL2A1-201ENST00000337299 GNL2Q13823 731 aaKnown RBP16.12■□□□□ 0.17
COL2A1-201ENST00000337299 CDK13Q14004 1512 aaKnown RBP16.12■□□□□ 0.17
COL2A1-201ENST00000337299 VPS37CA5D8V6 355 aaPredicted RBP16.12■□□□□ 0.17
COL2A1-201ENST00000337299 MBD3O95983 291 aa16.12■□□□□ 0.17
COL2A1-201ENST00000337299 GOLGA6L19H0YKK7 550 aa16.11■□□□□ 0.17
COL2A1-201ENST00000337299 RNF123Q5XPI4 1314 aa16.11■□□□□ 0.17
COL2A1-201ENST00000337299 CCDC66A2RUB6 948 aa16.11■□□□□ 0.17
COL2A1-201ENST00000337299 HTATSF1O43719 755 aaKnown RBP16.11■□□□□ 0.17
COL2A1-201ENST00000337299 BECN2A8MW95 431 aa16.1■□□□□ 0.17
COL2A1-201ENST00000337299 FIBPO43427 364 aa16.1■□□□□ 0.17
COL2A1-201ENST00000337299 INTS3Q68E01 1043 aaKnown RBP16.1■□□□□ 0.17
COL2A1-201ENST00000337299 AEBP1Q8IUX7 1158 aa16.1■□□□□ 0.17
COL2A1-201ENST00000337299 RIPK4P57078 832 aa16.1■□□□□ 0.17
COL2A1-201ENST00000337299 MVPQ14764 893 aaKnown RBP16.1■□□□□ 0.17
COL2A1-201ENST00000337299 ZNF830Q96NB3 372 aaPredicted RBP16.1■□□□□ 0.17
COL2A1-201ENST00000337299 TMEM132EQ6IEE7 984 aa16.09■□□□□ 0.17
COL2A1-201ENST00000337299 MIA2Q96PC5 1412 aa16.09■□□□□ 0.17
COL2A1-201ENST00000337299 HMMRO75330 724 aa16.09■□□□□ 0.17
COL2A1-201ENST00000337299 TPD52L1Q16890 204 aaPredicted RBP16.09■□□□□ 0.17
COL2A1-201ENST00000337299 OFD1O75665 1012 aa16.08■□□□□ 0.17
COL2A1-201ENST00000337299 RABEP1Q15276 862 aa16.08■□□□□ 0.16
COL2A1-201ENST00000337299 NOB1Q9ULX3 412 aaKnown RBP16.08■□□□□ 0.16
COL2A1-201ENST00000337299 DYNC1I1O14576 645 aa16.08■□□□□ 0.16
COL2A1-201ENST00000337299 PCDHB15Q9Y5E8 787 aa16.08■□□□□ 0.16
COL2A1-201ENST00000337299 MTHFSP49914 203 aa16.08■□□□□ 0.16
COL2A1-201ENST00000337299 AAMPQ13685 434 aa16.08■□□□□ 0.16
COL2A1-201ENST00000337299 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.08■□□□□ 0.16
COL2A1-201ENST00000337299 PLB1Q6P1J6 1458 aa16.07■□□□□ 0.16
COL2A1-201ENST00000337299 PLCD3Q8N3E9 789 aa16.07■□□□□ 0.16
COL2A1-201ENST00000337299 NGEFQ8N5V2 710 aa16.07■□□□□ 0.16
COL2A1-201ENST00000337299 BAG4O95429 457 aaKnown RBP16.07■□□□□ 0.16
COL2A1-201ENST00000337299 TRIM5Q9C035 493 aa16.07■□□□□ 0.16
COL2A1-201ENST00000337299 USP25Q9UHP3 1055 aa16.07■□□□□ 0.16
COL2A1-201ENST00000337299 HSP90B1P14625 803 aaKnown RBP16.06■□□□□ 0.16
COL2A1-201ENST00000337299 HOMER1Q86YM7 354 aa16.06■□□□□ 0.16
COL2A1-201ENST00000337299 WWC1Q8IX03 1113 aa16.06■□□□□ 0.16
COL2A1-201ENST00000337299 ATP6V1DQ9Y5K8 247 aa16.06■□□□□ 0.16
COL2A1-201ENST00000337299 RAPGEF3O95398 923 aa16.06■□□□□ 0.16
COL2A1-201ENST00000337299 HDGFP51858 240 aaKnown RBP16.06■□□□□ 0.16
COL2A1-201ENST00000337299 CHD1LQ86WJ1 897 aa16.05■□□□□ 0.16
COL2A1-201ENST00000337299 ANKRD30BQ9BXX2 1392 aa16.05■□□□□ 0.16
COL2A1-201ENST00000337299 RBM42Q9BTD8 480 aaKnown RBP16.05■□□□□ 0.16
COL2A1-201ENST00000337299 CHMP4AQ9BY43 222 aa16.05■□□□□ 0.16
COL2A1-201ENST00000337299 GDPD2Q9HCC8 539 aa16.05■□□□□ 0.16
COL2A1-201ENST00000337299 TNNQ9UQP3 1299 aa16.05■□□□□ 0.16
COL2A1-201ENST00000337299 LRPPRCP42704 1394 aaKnown RBP16.05■□□□□ 0.16
COL2A1-201ENST00000337299 CFAP70Q5T0N1 1121 aa16.04■□□□□ 0.16
COL2A1-201ENST00000337299 GORABQ5T7V8 394 aa16.04■□□□□ 0.16
COL2A1-201ENST00000337299 BICD2Q8TD16 824 aa16.04■□□□□ 0.16
COL2A1-201ENST00000337299 KIAA0586Q9BVV6 1533 aa16.04■□□□□ 0.16
COL2A1-201ENST00000337299 TROQ12816 1431 aaPredicted RBP16.04■□□□□ 0.16
COL2A1-201ENST00000337299 MINK1Q8N4C8 1332 aaPredicted RBP16.04■□□□□ 0.16
COL2A1-201ENST00000337299 RARSP54136 660 aaKnown RBP16.04■□□□□ 0.16
COL2A1-201ENST00000337299 TEX35Q5T0J7 233 aa16.04■□□□□ 0.16
COL2A1-201ENST00000337299 EPRSP07814 1512 aaKnown RBP16.04■□□□□ 0.16
COL2A1-201ENST00000337299 HDGFL2Q7Z4V5 671 aaPredicted RBP16.03■□□□□ 0.16
COL2A1-201ENST00000337299 SMC3Q9UQE7 1217 aa16.03■□□□□ 0.16
COL2A1-201ENST00000337299 HAP1P54257 671 aaPredicted RBP16.03■□□□□ 0.16
COL2A1-201ENST00000337299 CCDC112Q8NEF3 446 aa16.03■□□□□ 0.16
COL2A1-201ENST00000337299 TSC1Q92574 1164 aa16.02■□□□□ 0.16
COL2A1-201ENST00000337299 LAMC3Q9Y6N6 1575 aa16.02■□□□□ 0.16
COL2A1-201ENST00000337299 EFCAB5A4FU69 1503 aa16.02■□□□□ 0.16
COL2A1-201ENST00000337299 KLHL40Q2TBA0 621 aa16.02■□□□□ 0.16
COL2A1-201ENST00000337299 ZSCAN23Q3MJ62 389 aa16.02■□□□□ 0.16
COL2A1-201ENST00000337299 ATF7IPQ6VMQ6 1270 aa16.02■□□□□ 0.15
COL2A1-201ENST00000337299 SYNJ2O15056 1496 aa16.01■□□□□ 0.15
COL2A1-201ENST00000337299 PTPRKQ15262 1439 aa16.01■□□□□ 0.15
COL2A1-201ENST00000337299 VGLL3A8MV65 326 aa16.01■□□□□ 0.15
COL2A1-201ENST00000337299 PRIM1P49642 420 aaKnown RBP16.01■□□□□ 0.15
COL2A1-201ENST00000337299 TMEM57Q8N5G2 664 aa16.01■□□□□ 0.15
COL2A1-201ENST00000337299 ZKSCAN5Q9Y2L8 839 aa16■□□□□ 0.15
COL2A1-201ENST00000337299 VGFO15240 615 aaPredicted RBP16■□□□□ 0.15
COL2A1-201ENST00000337299 GOLGA6L1Q8N7Z2 621 aa16■□□□□ 0.15
COL2A1-201ENST00000337299 SKIDA1Q1XH10 827 aa15.99■□□□□ 0.15
COL2A1-201ENST00000337299 KDM2BQ8NHM5 1336 aa15.99■□□□□ 0.15
COL2A1-201ENST00000337299 TTC12Q9H892 705 aaPredicted RBP15.99■□□□□ 0.15
COL2A1-201ENST00000337299 SCAPERQ9BY12 1400 aa15.99■□□□□ 0.15
COL2A1-201ENST00000337299 FOSBP53539 338 aa15.99■□□□□ 0.15
COL2A1-201ENST00000337299 KIAA1107Q9UPP5 1409 aa15.98■□□□□ 0.15
COL2A1-201ENST00000337299 PCF11O94913 1555 aaKnown RBP15.98■□□□□ 0.15
COL2A1-201ENST00000337299 GPS2Q13227 327 aa15.98■□□□□ 0.15
COL2A1-201ENST00000337299 CWC22Q9HCG8 908 aaKnown RBP15.98■□□□□ 0.15
COL2A1-201ENST00000337299 HMOX1P09601 288 aa15.98■□□□□ 0.15
COL2A1-201ENST00000337299 MNS1Q8NEH6 495 aa15.98■□□□□ 0.15
COL2A1-201ENST00000337299 RTF1Q92541 710 aaKnown RBP15.98■□□□□ 0.15
COL2A1-201ENST00000337299 GAS2L3Q86XJ1 694 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms