RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 MYO5CQ9NQX4 1742 aa16.92■□□□□ 0.3
CCDC88C-201ENST00000331194 TCP11L2Q8N4U5 519 aa16.92■□□□□ 0.3
CCDC88C-201ENST00000331194 SHANK2Q9UPX8 1470 aa16.92■□□□□ 0.3
CCDC88C-201ENST00000331194 CD2BP2O95400 341 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-201ENST00000331194 TPM2P07951 284 aa16.91■□□□□ 0.3
CCDC88C-201ENST00000331194 DDIT3P35638 169 aa16.91■□□□□ 0.3
CCDC88C-201ENST00000331194 RIPK4P57078 832 aa16.9■□□□□ 0.3
CCDC88C-201ENST00000331194 FAM13BQ9NYF5 915 aa16.9■□□□□ 0.3
CCDC88C-201ENST00000331194 HSP90AB1P08238 724 aaKnown RBP16.9■□□□□ 0.3
CCDC88C-201ENST00000331194 SAMD9LQ8IVG5 1584 aa16.89■□□□□ 0.29
CCDC88C-201ENST00000331194 TRAPPC8Q9Y2L5 1435 aa16.89■□□□□ 0.29
CCDC88C-201ENST00000331194 MVPQ14764 893 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-201ENST00000331194 RBM42Q9BTD8 480 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-201ENST00000331194 NINLQ9Y2I6 1382 aa16.88■□□□□ 0.29
CCDC88C-201ENST00000331194 FTSJ3Q8IY81 847 aaKnown RBP16.88■□□□□ 0.29
CCDC88C-201ENST00000331194 CCDC141Q6ZP82 1450 aa16.88■□□□□ 0.29
CCDC88C-201ENST00000331194 FGD1P98174 961 aa16.88■□□□□ 0.29
CCDC88C-201ENST00000331194 ZCCHC11Q5TAX3 1644 aaKnown RBP16.88■□□□□ 0.29
CCDC88C-201ENST00000331194 LAMC1P11047 1609 aa16.87■□□□□ 0.29
CCDC88C-201ENST00000331194 NASPP49321 788 aaPredicted RBP16.87■□□□□ 0.29
CCDC88C-201ENST00000331194 CDCA8Q53HL2 280 aa16.87■□□□□ 0.29
CCDC88C-201ENST00000331194 TSR2Q969E8 191 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-201ENST00000331194 CDC42BPBQ9Y5S2 1711 aa16.87■□□□□ 0.29
CCDC88C-201ENST00000331194 SSFA2P28290 1259 aa16.87■□□□□ 0.29
CCDC88C-201ENST00000331194 R3HCC1Q9Y3T6 440 aaKnown RBP16.87■□□□□ 0.29
CCDC88C-201ENST00000331194 RAB3GAP1Q15042 981 aa16.85■□□□□ 0.29
CCDC88C-201ENST00000331194 SPAG9O60271 1321 aaKnown RBP16.85■□□□□ 0.29
CCDC88C-201ENST00000331194 DZIP1LQ8IYY4 767 aaKnown RBP16.85■□□□□ 0.29
CCDC88C-201ENST00000331194 GBP4Q96PP9 640 aa16.85■□□□□ 0.29
CCDC88C-201ENST00000331194 LNPKQ9C0E8 428 aa16.85■□□□□ 0.29
CCDC88C-201ENST00000331194 ZSCAN30Q86W11 494 aa16.85■□□□□ 0.29
CCDC88C-201ENST00000331194 ITPRIPQ8IWB1 547 aa16.85■□□□□ 0.29
CCDC88C-201ENST00000331194 PRDM4Q9UKN5 801 aa16.84■□□□□ 0.29
CCDC88C-201ENST00000331194 ISY1Q9ULR0 285 aaKnown RBP16.84■□□□□ 0.29
CCDC88C-201ENST00000331194 ASXL2Q76L83 1435 aa16.84■□□□□ 0.29
CCDC88C-201ENST00000331194 OFD1O75665 1012 aa16.83■□□□□ 0.29
CCDC88C-201ENST00000331194 RAPGEF3O95398 923 aa16.83■□□□□ 0.29
CCDC88C-201ENST00000331194 PDE4CQ08493 712 aa16.83■□□□□ 0.29
CCDC88C-201ENST00000331194 RUNDC1Q96C34 613 aa16.83■□□□□ 0.29
CCDC88C-201ENST00000331194 SMC5Q8IY18 1101 aa16.83■□□□□ 0.28
CCDC88C-201ENST00000331194 XPCQ01831 940 aaPredicted RBP16.83■□□□□ 0.28
CCDC88C-201ENST00000331194 ZKSCAN2Q63HK3 967 aa16.83■□□□□ 0.28
CCDC88C-201ENST00000331194 EIF2AK4Q9P2K8 1649 aaKnown RBP16.83■□□□□ 0.28
CCDC88C-201ENST00000331194 NCOA3Q9Y6Q9 1424 aa16.83■□□□□ 0.28
CCDC88C-201ENST00000331194 ZBTB7CA1YPR0 619 aa16.82■□□□□ 0.28
CCDC88C-201ENST00000331194 MSNP26038 577 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-201ENST00000331194 CCDC173Q0VFZ6 552 aa16.82■□□□□ 0.28
CCDC88C-201ENST00000331194 KIF2CQ99661 725 aa16.82■□□□□ 0.28
CCDC88C-201ENST00000331194 SYNMO15061 1565 aa16.82■□□□□ 0.28
CCDC88C-201ENST00000331194 KIF3BO15066 747 aa16.82■□□□□ 0.28
CCDC88C-201ENST00000331194 NCLP19338 710 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-201ENST00000331194 DDX49Q9Y6V7 483 aaKnown RBP16.82■□□□□ 0.28
CCDC88C-201ENST00000331194 AK9Q5TCS8 1911 aa16.82■□□□□ 0.28
CCDC88C-201ENST00000331194 TRIM27P14373 513 aa16.81■□□□□ 0.28
CCDC88C-201ENST00000331194 SCAPERQ9BY12 1400 aa16.81■□□□□ 0.28
CCDC88C-201ENST00000331194 PPP1R9BQ96SB3 815 aa16.81■□□□□ 0.28
CCDC88C-201ENST00000331194 PLCH2O75038 1416 aa16.81■□□□□ 0.28
CCDC88C-201ENST00000331194 MORC1Q86VD1 984 aa16.81■□□□□ 0.28
CCDC88C-201ENST00000331194 GAS2L2Q8NHY3 880 aa16.81■□□□□ 0.28
CCDC88C-201ENST00000331194 SMC4Q9NTJ3 1288 aa16.81■□□□□ 0.28
CCDC88C-201ENST00000331194 ZMYM3Q14202 1370 aa16.81■□□□□ 0.28
CCDC88C-201ENST00000331194 MYOM1P52179 1685 aa16.8■□□□□ 0.28
CCDC88C-201ENST00000331194 RBM25P49756 843 aaKnown RBP16.8■□□□□ 0.28
CCDC88C-201ENST00000331194 NPC1L1Q9UHC9 1359 aa16.8■□□□□ 0.28
CCDC88C-201ENST00000331194 CFAP70Q5T0N1 1121 aa16.8■□□□□ 0.28
CCDC88C-201ENST00000331194 PLXNC1O60486 1568 aa16.8■□□□□ 0.28
CCDC88C-201ENST00000331194 SNX21Q969T3 373 aa16.79■□□□□ 0.28
CCDC88C-201ENST00000331194 SKOR2Q2VWA4 1001 aaPredicted RBP16.79■□□□□ 0.28
CCDC88C-201ENST00000331194 CALD1Q05682 793 aaKnown RBP16.79■□□□□ 0.28
CCDC88C-201ENST00000331194 NGEFQ8N5V2 710 aa16.79■□□□□ 0.28
CCDC88C-201ENST00000331194 PRDM10Q9NQV6 1147 aa16.79■□□□□ 0.28
CCDC88C-201ENST00000331194 EXOSC9Q06265 439 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-201ENST00000331194 SCAF11Q99590 1463 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-201ENST00000331194 RNF17Q9BXT8 1623 aaKnown RBP16.78■□□□□ 0.28
CCDC88C-201ENST00000331194 MTHFSP49914 203 aa16.78■□□□□ 0.28
CCDC88C-201ENST00000331194 GGT6Q6P531 493 aa16.78■□□□□ 0.28
CCDC88C-201ENST00000331194 SSH1Q8WYL5 1049 aa16.78■□□□□ 0.28
CCDC88C-201ENST00000331194 WDR63Q8IWG1 891 aa16.77■□□□□ 0.28
CCDC88C-201ENST00000331194 TMEM57Q8N5G2 664 aa16.77■□□□□ 0.28
CCDC88C-201ENST00000331194 PHF23Q9BUL5 403 aaPredicted RBP16.77■□□□□ 0.28
CCDC88C-201ENST00000331194 PREX2Q70Z35 1606 aa16.77■□□□□ 0.28
CCDC88C-201ENST00000331194 CAVIN1Q6NZI2 390 aaKnown RBP16.77■□□□□ 0.27
CCDC88C-201ENST00000331194 ANP32BQ92688 251 aaKnown RBP16.77■□□□□ 0.27
CCDC88C-201ENST00000331194 CHAMP1Q96JM3 812 aa16.77■□□□□ 0.27
CCDC88C-201ENST00000331194 NOB1Q9ULX3 412 aaKnown RBP16.77■□□□□ 0.27
CCDC88C-201ENST00000331194 HDAC1Q13547 482 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 MCTP1Q6DN14 999 aa16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 SLC12A5Q9H2X9 1139 aa16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 POLR3AO14802 1390 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 BAG4O95429 457 aaKnown RBP16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 RBSNQ9H1K0 784 aa16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 CIZ1Q9ULV3 898 aaPredicted RBP16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 IQGAP1P46940 1657 aa16.76■□□□□ 0.27
CCDC88C-201ENST00000331194 UQCRHLA0A096LP55 91 aa16.75■□□□□ 0.27
CCDC88C-201ENST00000331194 UQCRHP07919 91 aa16.75■□□□□ 0.27
CCDC88C-201ENST00000331194 FANCAO15360 1455 aa16.75■□□□□ 0.27
CCDC88C-201ENST00000331194 PKP1Q13835 747 aa16.75■□□□□ 0.27
CCDC88C-201ENST00000331194 ARHGEF5Q12774 1597 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms