RNA–Protein interactions for RNA: ENST00000322344.7

PNKP-201, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PNKP, Length 2,041 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-201ENST00000322344 TULP4Q9NRJ4 1543 aa29.28■■■□□ 2.28
PNKP-201ENST00000322344 ANP32AP39687 249 aaKnown RBP29.28■■■□□ 2.28
PNKP-201ENST00000322344 PREX1Q8TCU6 1659 aa29.27■■■□□ 2.28
PNKP-201ENST00000322344 ANKRD36BQ8N2N9 1353 aa29.26■■■□□ 2.27
PNKP-201ENST00000322344 NINLQ9Y2I6 1382 aa29.24■■■□□ 2.27
PNKP-201ENST00000322344 TMEM131LA2VDJ0 1609 aa29.24■■■□□ 2.27
PNKP-201ENST00000322344 SHPRHQ149N8 1683 aa29.24■■■□□ 2.27
PNKP-201ENST00000322344 C20orf194Q5TEA3 1177 aa29.23■■■□□ 2.27
PNKP-201ENST00000322344 NUTM2DQ5VT03 806 aaPredicted RBP29.21■■■□□ 2.27
PNKP-201ENST00000322344 NOP58Q9Y2X3 529 aaKnown RBP29.2■■■□□ 2.27
PNKP-201ENST00000322344 CFAP53Q96M91 514 aa29.2■■■□□ 2.26
PNKP-201ENST00000322344 IPO9Q96P70 1041 aaKnown RBP29.18■■■□□ 2.26
PNKP-201ENST00000322344 SPINK5Q9NQ38 1064 aaPredicted RBP29.18■■■□□ 2.26
PNKP-201ENST00000322344 RUNDC1Q96C34 613 aa29.17■■■□□ 2.26
PNKP-201ENST00000322344 REREQ9P2R6 1566 aa29.17■■■□□ 2.26
PNKP-201ENST00000322344 PDE4AP27815 886 aa29.16■■■□□ 2.26
PNKP-201ENST00000322344 CYB5RLQ6IPT4 315 aa29.16■■■□□ 2.26
PNKP-201ENST00000322344 KDM2BQ8NHM5 1336 aa29.15■■■□□ 2.26
PNKP-201ENST00000322344 CENPQQ7L2Z9 268 aaPredicted RBP29.15■■■□□ 2.26
PNKP-201ENST00000322344 PPP6R1Q9UPN7 881 aa29.15■■■□□ 2.26
PNKP-201ENST00000322344 WWC1Q8IX03 1113 aa29.15■■■□□ 2.26
PNKP-201ENST00000322344 BACH2Q9BYV9 841 aa29.14■■■□□ 2.26
PNKP-201ENST00000322344 MYO5BQ9ULV0 1848 aa29.14■■■□□ 2.25
PNKP-201ENST00000322344 DIP2BQ9P265 1576 aa29.13■■■□□ 2.25
PNKP-201ENST00000322344 IQSEC2Q5JU85 1478 aa29.13■■■□□ 2.25
PNKP-201ENST00000322344 NCBP3Q53F19 620 aaKnown RBP29.13■■■□□ 2.25
PNKP-201ENST00000322344 AGLP35573 1532 aa29.13■■■□□ 2.25
PNKP-201ENST00000322344 TNNT2P45379 298 aaPredicted RBP29.12■■■□□ 2.25
PNKP-201ENST00000322344 MTHFSP49914 203 aa29.12■■■□□ 2.25
PNKP-201ENST00000322344 PTPRMP28827 1452 aa29.12■■■□□ 2.25
PNKP-201ENST00000322344 CABP2Q9NPB3 220 aa29.11■■■□□ 2.25
PNKP-201ENST00000322344 ATAD2Q6PL18 1390 aa29.11■■■□□ 2.25
PNKP-201ENST00000322344 FAM69CQ0P6D2 419 aa29.1■■■□□ 2.25
PNKP-201ENST00000322344 ABCC11Q96J66 1382 aa29.09■■■□□ 2.25
PNKP-201ENST00000322344 YTHDC2Q9H6S0 1430 aaKnown RBP29.09■■■□□ 2.25
PNKP-201ENST00000322344 PHF23Q9BUL5 403 aaPredicted RBP29.08■■■□□ 2.25
PNKP-201ENST00000322344 CLTCQ00610 1675 aaKnown RBP29.08■■■□□ 2.25
PNKP-201ENST00000322344 DMRT2Q9Y5R5 561 aa29.08■■■□□ 2.25
PNKP-201ENST00000322344 CCDC27Q2M243 656 aa29.07■■■□□ 2.24
PNKP-201ENST00000322344 STK26Q9P289 416 aa29.07■■■□□ 2.24
PNKP-201ENST00000322344 WDR63Q8IWG1 891 aa29.06■■■□□ 2.24
PNKP-201ENST00000322344 RIMBP3CA6NJZ7 1639 aa29.06■■■□□ 2.24
PNKP-201ENST00000322344 RIMBP3BA6NNM3 1639 aa29.06■■■□□ 2.24
PNKP-201ENST00000322344 RIMBP3Q9UFD9 1639 aa29.06■■■□□ 2.24
PNKP-201ENST00000322344 SRPK2P78362 688 aaKnown RBP29.06■■■□□ 2.24
PNKP-201ENST00000322344 A0A1W2PP64 1363 aa29.05■■■□□ 2.24
PNKP-201ENST00000322344 TCP11L2Q8N4U5 519 aa29.05■■■□□ 2.24
PNKP-201ENST00000322344 ZBTB47Q9UFB7 747 aaPredicted RBP29.04■■■□□ 2.24
PNKP-201ENST00000322344 SAFB2Q14151 953 aaKnown RBP eCLIP29.04■■■□□ 2.24
PNKP-201ENST00000322344 PDE3AQ14432 1141 aa29.04■■■□□ 2.24
PNKP-201ENST00000322344 ALKQ9UM73 1620 aa29.04■■■□□ 2.24
PNKP-201ENST00000322344 BCAR3O75815 825 aa29.03■■■□□ 2.24
PNKP-201ENST00000322344 FBXO31Q5XUX0 539 aaPredicted RBP29.03■■■□□ 2.24
PNKP-201ENST00000322344 TERF2IPQ9NYB0 399 aa29.03■■■□□ 2.24
PNKP-201ENST00000322344 MED14O60244 1454 aa29.03■■■□□ 2.24
PNKP-201ENST00000322344 POGKQ9P215 609 aa29.02■■■□□ 2.24
PNKP-201ENST00000322344 PRAM1Q96QH2 718 aa29.01■■■□□ 2.24
PNKP-201ENST00000322344 PAK3O75914 559 aaPredicted RBP29■■■□□ 2.23
PNKP-201ENST00000322344 STAG3Q9UJ98 1225 aa28.99■■■□□ 2.23
PNKP-201ENST00000322344 SPATA31D1Q6ZQQ2 1576 aa28.98■■■□□ 2.23
PNKP-201ENST00000322344 MINK1Q8N4C8 1332 aaPredicted RBP28.97■■■□□ 2.23
PNKP-201ENST00000322344 ADGRB2O60241 1585 aa28.97■■■□□ 2.23
PNKP-201ENST00000322344 ANKRD26Q9UPS8 1709 aa28.97■■■□□ 2.23
PNKP-201ENST00000322344 DLC1Q96QB1 1528 aa28.96■■■□□ 2.23
PNKP-201ENST00000322344 NEUROD2Q15784 382 aa28.96■■■□□ 2.23
PNKP-201ENST00000322344 RRP7AQ9Y3A4 280 aaKnown RBP28.96■■■□□ 2.23
PNKP-201ENST00000322344 U2AF1L5P0DN76 240 aaPredicted RBP28.94■■■□□ 2.22
PNKP-201ENST00000322344 U2AF1Q01081 240 aaKnown RBP eCLIP28.94■■■□□ 2.229e-9■■■■■ 30
PNKP-201ENST00000322344 CD163L1Q9NR16 1453 aa28.94■■■□□ 2.22
PNKP-201ENST00000322344 ARHGEF40Q8TER5 1519 aa28.94■■■□□ 2.22
PNKP-201ENST00000322344 A2ML1A8K2U0 1454 aa28.94■■■□□ 2.22
PNKP-201ENST00000322344 HDGFL2Q7Z4V5 671 aaPredicted RBP28.93■■■□□ 2.22
PNKP-201ENST00000322344 CANXP27824 592 aaKnown RBP28.93■■■□□ 2.22
PNKP-201ENST00000322344 MYH16Q9H6N6 1097 aa28.93■■■□□ 2.22
PNKP-201ENST00000322344 AAMPQ13685 434 aa28.92■■■□□ 2.22
PNKP-201ENST00000322344 NPM2Q86SE8 214 aaKnown RBP28.92■■■□□ 2.22
PNKP-201ENST00000322344 TSPOAP1O95153 1857 aa28.92■■■□□ 2.22
PNKP-201ENST00000322344 NLRP1Q9C000 1473 aa28.91■■■□□ 2.22
PNKP-201ENST00000322344 RARSP54136 660 aaKnown RBP28.91■■■□□ 2.22
PNKP-201ENST00000322344 COL3A1P02461 1466 aaPredicted RBP28.91■■■□□ 2.22
PNKP-201ENST00000322344 RIMS2Q9UQ26 1411 aa28.89■■■□□ 2.22
PNKP-201ENST00000322344 FYB1O15117 783 aa28.89■■■□□ 2.22
PNKP-201ENST00000322344 CDK19Q9BWU1 502 aa28.89■■■□□ 2.22
PNKP-201ENST00000322344 GGNBP2Q9H3C7 697 aa28.89■■■□□ 2.22
PNKP-201ENST00000322344 SKAP1Q86WV1 359 aa28.89■■■□□ 2.21
PNKP-201ENST00000322344 SENP3Q9H4L4 574 aaPredicted RBP28.87■■■□□ 2.21
PNKP-201ENST00000322344 FAM161AQ3B820 660 aa28.86■■■□□ 2.21
PNKP-201ENST00000322344 CT47B1P0C2W7 299 aaPredicted RBP28.85■■■□□ 2.21
PNKP-201ENST00000322344 CLUAP1Q96AJ1 413 aa28.85■■■□□ 2.21
PNKP-201ENST00000322344 DDRGK1Q96HY6 314 aa28.84■■■□□ 2.21
PNKP-201ENST00000322344 SETD1AO15047 1707 aaKnown RBP28.83■■■□□ 2.21
PNKP-201ENST00000322344 ATP7BP35670 1465 aa28.83■■■□□ 2.21
PNKP-201ENST00000322344 PLEKHF1Q96S99 279 aa28.83■■■□□ 2.21
PNKP-201ENST00000322344 KIF20BQ96Q89 1820 aa28.82■■■□□ 2.2
PNKP-201ENST00000322344 PNNQ9H307 717 aaKnown RBP28.82■■■□□ 2.2
PNKP-201ENST00000322344 PNPLA6Q8IY17 1366 aa28.81■■■□□ 2.2
PNKP-201ENST00000322344 PANK1Q8TE04 598 aa28.81■■■□□ 2.2
PNKP-201ENST00000322344 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.81■■■□□ 2.2
PNKP-201ENST00000322344 CABP1Q9NZU7 370 aa28.81■■■□□ 2.2
PNKP-201ENST00000322344 COG6Q9Y2V7 657 aa28.81■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms