RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 NUDCQ9Y266 331 aa10.08□□□□□ -0.8
TRIM55-202ENST00000315962 NRXN1Q9ULB1 1477 aa10.08□□□□□ -0.8
TRIM55-202ENST00000315962 MTHFSP49914 203 aa10.07□□□□□ -0.8
TRIM55-202ENST00000315962 NEXMIFQ5QGS0 1516 aa10.07□□□□□ -0.8
TRIM55-202ENST00000315962 METP08581 1390 aa10.07□□□□□ -0.8
TRIM55-202ENST00000315962 LRPPRCP42704 1394 aaKnown RBP10.07□□□□□ -0.8
TRIM55-202ENST00000315962 IQGAP1P46940 1657 aa10.07□□□□□ -0.8
TRIM55-202ENST00000315962 PIK3C2BO00750 1634 aa10.07□□□□□ -0.8
TRIM55-202ENST00000315962 ADGRB1O14514 1584 aa10.06□□□□□ -0.8
TRIM55-202ENST00000315962 CLTCQ00610 1675 aaKnown RBP10.06□□□□□ -0.8
TRIM55-202ENST00000315962 KIF13AQ9H1H9 1805 aa10.06□□□□□ -0.8
TRIM55-202ENST00000315962 SOX12O15370 315 aa10.06□□□□□ -0.8
TRIM55-202ENST00000315962 RTN4Q9NQC3 1192 aaKnown RBP10.06□□□□□ -0.8
TRIM55-202ENST00000315962 RIMS2Q9UQ26 1411 aa10.05□□□□□ -0.8
TRIM55-202ENST00000315962 PLEKHG5O94827 1062 aa10.05□□□□□ -0.8
TRIM55-202ENST00000315962 ZMYM4Q5VZL5 1548 aa10.05□□□□□ -0.8
TRIM55-202ENST00000315962 YTHDC2Q9H6S0 1430 aaKnown RBP10.05□□□□□ -0.8
TRIM55-202ENST00000315962 ZRANB1Q9UGI0 708 aa10.04□□□□□ -0.8
TRIM55-202ENST00000315962 DMRT2Q9Y5R5 561 aa10.04□□□□□ -0.8
TRIM55-202ENST00000315962 A2ML1A8K2U0 1454 aa10.04□□□□□ -0.8
TRIM55-202ENST00000315962 LAMC1P11047 1609 aa10.04□□□□□ -0.8
TRIM55-202ENST00000315962 MYO5BQ9ULV0 1848 aa10.04□□□□□ -0.8
TRIM55-202ENST00000315962 SPINK5Q9NQ38 1064 aaPredicted RBP10.04□□□□□ -0.8
TRIM55-202ENST00000315962 LAS1LQ9Y4W2 734 aaKnown RBP10.04□□□□□ -0.8
TRIM55-202ENST00000315962 CGNL1Q0VF96 1302 aa10.03□□□□□ -0.8
TRIM55-202ENST00000315962 TNRQ92752 1358 aa10.03□□□□□ -0.8
TRIM55-202ENST00000315962 PREX1Q8TCU6 1659 aa10.03□□□□□ -0.8
TRIM55-202ENST00000315962 U2SURPO15042 1029 aaKnown RBP10.03□□□□□ -0.8
TRIM55-202ENST00000315962 PPP6R1Q9UPN7 881 aa10.03□□□□□ -0.8
TRIM55-202ENST00000315962 ASXL1Q8IXJ9 1541 aa10.03□□□□□ -0.8
TRIM55-202ENST00000315962 PPLO60437 1756 aa10.03□□□□□ -0.8
TRIM55-202ENST00000315962 TMEM131LA2VDJ0 1609 aa10.02□□□□□ -0.8
TRIM55-202ENST00000315962 A0A1W2PP64 1363 aa10.02□□□□□ -0.8
TRIM55-202ENST00000315962 RCAN3Q9UKA8 241 aa10.02□□□□□ -0.81
TRIM55-202ENST00000315962 FYB1O15117 783 aa10.02□□□□□ -0.81
TRIM55-202ENST00000315962 U2AF1L5P0DN76 240 aaPredicted RBP10.02□□□□□ -0.81
TRIM55-202ENST00000315962 U2AF1Q01081 240 aaKnown RBP eCLIP10.02□□□□□ -0.81
TRIM55-202ENST00000315962 IFT172Q9UG01 1749 aa10.01□□□□□ -0.81
TRIM55-202ENST00000315962 ANP32AP39687 249 aaKnown RBP10□□□□□ -0.81
TRIM55-202ENST00000315962 SMG6Q86US8 1419 aaKnown RBP10□□□□□ -0.81
TRIM55-202ENST00000315962 EXOC6Q8TAG9 804 aa10□□□□□ -0.81
TRIM55-202ENST00000315962 TULP4Q9NRJ4 1543 aa10□□□□□ -0.81
TRIM55-202ENST00000315962 PMFBP1Q8TBY8 1022 aa10□□□□□ -0.81
TRIM55-202ENST00000315962 TERF2IPQ9NYB0 399 aa10□□□□□ -0.81
TRIM55-202ENST00000315962 SBNO2Q9Y2G9 1366 aa9.99□□□□□ -0.81
TRIM55-202ENST00000315962 C20orf194Q5TEA3 1177 aa9.99□□□□□ -0.81
TRIM55-202ENST00000315962 NME9Q86XW9 330 aa9.99□□□□□ -0.81
TRIM55-202ENST00000315962 KDM5AP29375 1690 aaKnown RBP9.99□□□□□ -0.81
TRIM55-202ENST00000315962 ALKQ9UM73 1620 aa9.99□□□□□ -0.81
TRIM55-202ENST00000315962 ZBTB47Q9UFB7 747 aaPredicted RBP9.99□□□□□ -0.81
TRIM55-202ENST00000315962 ARHGEF40Q8TER5 1519 aa9.99□□□□□ -0.81
TRIM55-202ENST00000315962 PTPRMP28827 1452 aa9.99□□□□□ -0.81
TRIM55-202ENST00000315962 MYOM1P52179 1685 aa9.98□□□□□ -0.81
TRIM55-202ENST00000315962 HDGFL2Q7Z4V5 671 aaPredicted RBP9.98□□□□□ -0.81
TRIM55-202ENST00000315962 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.98□□□□□ -0.81
TRIM55-202ENST00000315962 EID1Q9Y6B2 187 aa9.98□□□□□ -0.81
TRIM55-202ENST00000315962 AGLP35573 1532 aa9.98□□□□□ -0.81
TRIM55-202ENST00000315962 QRICH2Q9H0J4 1663 aa9.98□□□□□ -0.81
TRIM55-202ENST00000315962 TMEM2Q9UHN6 1383 aa9.98□□□□□ -0.81
TRIM55-202ENST00000315962 WASLO00401 505 aaPredicted RBP9.98□□□□□ -0.81
TRIM55-202ENST00000315962 IL27Q8NEV9 243 aa9.98□□□□□ -0.81
TRIM55-202ENST00000315962 NUDT16Q96DE0 195 aaKnown RBP9.98□□□□□ -0.81
TRIM55-202ENST00000315962 NEURL4Q96JN8 1562 aa9.98□□□□□ -0.81
TRIM55-202ENST00000315962 HDGFP51858 240 aaKnown RBP9.97□□□□□ -0.81
TRIM55-202ENST00000315962 RRS1Q15050 365 aaKnown RBP9.97□□□□□ -0.81
TRIM55-202ENST00000315962 RTL5Q5HYW3 569 aaPredicted RBP9.97□□□□□ -0.81
TRIM55-202ENST00000315962 AMOTL2Q9Y2J4 779 aa9.97□□□□□ -0.81
TRIM55-202ENST00000315962 ANKRD36BQ8N2N9 1353 aa9.97□□□□□ -0.81
TRIM55-202ENST00000315962 GOLGA2Q08379 1002 aa9.97□□□□□ -0.81
TRIM55-202ENST00000315962 NUTM2GQ5VZR2 741 aa9.97□□□□□ -0.81
TRIM55-202ENST00000315962 ERICH6BQ5W0A0 696 aa9.97□□□□□ -0.81
TRIM55-202ENST00000315962 TCP11L2Q8N4U5 519 aa9.97□□□□□ -0.81
TRIM55-202ENST00000315962 ZFYVE9O95405 1425 aa9.97□□□□□ -0.81
TRIM55-202ENST00000315962 SETBP1Q9Y6X0 1596 aa9.97□□□□□ -0.81
TRIM55-202ENST00000315962 KIAA1210Q9ULL0 1709 aa9.97□□□□□ -0.81
TRIM55-202ENST00000315962 IPO9Q96P70 1041 aaKnown RBP9.96□□□□□ -0.81
TRIM55-202ENST00000315962 BCL2L13Q9BXK5 485 aa9.96□□□□□ -0.81
TRIM55-202ENST00000315962 ROBO2Q9HCK4 1378 aa9.96□□□□□ -0.81
TRIM55-202ENST00000315962 ZC3H13Q5T200 1668 aaKnown RBP9.96□□□□□ -0.81
TRIM55-202ENST00000315962 RRP1P56182 461 aaKnown RBP9.96□□□□□ -0.81
TRIM55-202ENST00000315962 EMILIN1Q9Y6C2 1016 aa9.96□□□□□ -0.81
TRIM55-202ENST00000315962 BCAR3O75815 825 aa9.96□□□□□ -0.82
TRIM55-202ENST00000315962 HMOX1P09601 288 aa9.96□□□□□ -0.82
TRIM55-202ENST00000315962 DUSP27Q5VZP5 1158 aa9.95□□□□□ -0.82
TRIM55-202ENST00000315962 ANO8Q9HCE9 1232 aaPredicted RBP9.95□□□□□ -0.82
TRIM55-202ENST00000315962 SPATA31D1Q6ZQQ2 1576 aa9.94□□□□□ -0.82
TRIM55-202ENST00000315962 SLC4A3P48751 1232 aa9.94□□□□□ -0.82
TRIM55-202ENST00000315962 CFAP53Q96M91 514 aa9.94□□□□□ -0.82
TRIM55-202ENST00000315962 PRR36Q9H6K5 1346 aa9.94□□□□□ -0.82
TRIM55-202ENST00000315962 WWC1Q8IX03 1113 aa9.94□□□□□ -0.82
TRIM55-202ENST00000315962 KCNA6P17658 529 aa9.93□□□□□ -0.82
TRIM55-202ENST00000315962 THEMISQ8N1K5 641 aaPredicted RBP9.93□□□□□ -0.82
TRIM55-202ENST00000315962 CCDC61Q9Y6R9 512 aa9.93□□□□□ -0.82
TRIM55-202ENST00000315962 ATAD2Q6PL18 1390 aa9.93□□□□□ -0.82
TRIM55-202ENST00000315962 NPC1L1Q9UHC9 1359 aa9.93□□□□□ -0.82
TRIM55-202ENST00000315962 BLMP54132 1417 aaPredicted RBP9.93□□□□□ -0.82
TRIM55-202ENST00000315962 ARHGEF28Q8N1W1 1705 aaKnown RBP9.93□□□□□ -0.82
TRIM55-202ENST00000315962 FRAT1Q92837 279 aaPredicted RBP9.93□□□□□ -0.82
TRIM55-202ENST00000315962 ABCC11Q96J66 1382 aa9.92□□□□□ -0.82
TRIM55-202ENST00000315962 PDE3BQ13370 1112 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms