RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 HIRIP3Q9BW71 556 aaPredicted RBP11.14□□□□□ -0.63
CNOT4-201ENST00000315544 RGPD8O14715 1765 aaPredicted RBP11.13□□□□□ -0.63
CNOT4-201ENST00000315544 NUP155O75694 1391 aa11.13□□□□□ -0.63
CNOT4-201ENST00000315544 ROCK2O75116 1388 aaKnown RBP11.13□□□□□ -0.63
CNOT4-201ENST00000315544 LRRC37A3O60309 1634 aa11.12□□□□□ -0.63
CNOT4-201ENST00000315544 TMEM2Q9UHN6 1383 aa11.11□□□□□ -0.63
CNOT4-201ENST00000315544 PHF23Q9BUL5 403 aaPredicted RBP11.1□□□□□ -0.63
CNOT4-201ENST00000315544 NWD2Q9ULI1 1742 aa11.1□□□□□ -0.63
CNOT4-201ENST00000315544 NPHP4O75161 1426 aaPredicted RBP11.1□□□□□ -0.63
CNOT4-201ENST00000315544 PTPRUQ92729 1446 aa11.1□□□□□ -0.63
CNOT4-201ENST00000315544 COL24A1Q17RW2 1714 aa11.09□□□□□ -0.63
CNOT4-201ENST00000315544 WASHC2CQ9Y4E1 1318 aa11.07□□□□□ -0.64
CNOT4-201ENST00000315544 RGPD3A6NKT7 1758 aaPredicted RBP11.07□□□□□ -0.64
CNOT4-201ENST00000315544 RGPD4Q7Z3J3 1758 aa11.07□□□□□ -0.64
CNOT4-201ENST00000315544 LMO7Q8WWI1 1683 aa11.07□□□□□ -0.64
CNOT4-201ENST00000315544 COL18A1P39060 1754 aa11.06□□□□□ -0.64
CNOT4-201ENST00000315544 KDM2BQ8NHM5 1336 aa11.06□□□□□ -0.64
CNOT4-201ENST00000315544 ABCC6O95255 1503 aa11.05□□□□□ -0.64
CNOT4-201ENST00000315544 PHLPP1O60346 1717 aa11.05□□□□□ -0.64
CNOT4-201ENST00000315544 RBM19Q9Y4C8 960 aaKnown RBP11.05□□□□□ -0.64
CNOT4-201ENST00000315544 EIF4G2P78344 907 aaKnown RBP eCLIP11.04□□□□□ -0.64
CNOT4-201ENST00000315544 PKD2Q13563 968 aa11.04□□□□□ -0.64
CNOT4-201ENST00000315544 ITGAEP38570 1179 aa11.04□□□□□ -0.64
CNOT4-201ENST00000315544 YTHDC1Q96MU7 727 aaKnown RBP11.04□□□□□ -0.64
CNOT4-201ENST00000315544 PEAK1Q9H792 1746 aa11.03□□□□□ -0.64
CNOT4-201ENST00000315544 AMER1Q5JTC6 1135 aaPredicted RBP11.03□□□□□ -0.64
CNOT4-201ENST00000315544 KANK1Q14678 1352 aa11.02□□□□□ -0.64
CNOT4-201ENST00000315544 PLEKHH1Q9ULM0 1364 aa11.02□□□□□ -0.65
CNOT4-201ENST00000315544 ADAMTS7Q9UKP4 1686 aa11.01□□□□□ -0.65
CNOT4-201ENST00000315544 FAM135BQ49AJ0 1406 aa11.01□□□□□ -0.65
CNOT4-201ENST00000315544 CHIC2Q9UKJ5 165 aa11.01□□□□□ -0.65
CNOT4-201ENST00000315544 PIK3C2AO00443 1686 aa11□□□□□ -0.65
CNOT4-201ENST00000315544 RIMS2Q9UQ26 1411 aa10.99□□□□□ -0.65
CNOT4-201ENST00000315544 CICQ96RK0 1608 aaPredicted RBP10.98□□□□□ -0.65
CNOT4-201ENST00000315544 SHANK3Q9BYB0 1731 aa10.98□□□□□ -0.65
CNOT4-201ENST00000315544 SIPA1L3O60292 1781 aaPredicted RBP10.98□□□□□ -0.65
CNOT4-201ENST00000315544 MAP2P11137 1827 aaKnown RBP10.98□□□□□ -0.65
CNOT4-201ENST00000315544 NBPF1Q3BBV0 1214 aa10.97□□□□□ -0.65
CNOT4-201ENST00000315544 PXDNQ92626 1479 aa10.97□□□□□ -0.65
CNOT4-201ENST00000315544 FAM208AQ9UK61 1670 aaKnown RBP10.97□□□□□ -0.65
CNOT4-201ENST00000315544 THSD7AQ9UPZ6 1657 aa10.96□□□□□ -0.65
CNOT4-201ENST00000315544 ARID3CA6NKF2 412 aa10.95□□□□□ -0.66
CNOT4-201ENST00000315544 ANP32EQ9BTT0 268 aa10.95□□□□□ -0.66
CNOT4-201ENST00000315544 SLC52A1Q9NWF4 448 aa10.94□□□□□ -0.66
CNOT4-201ENST00000315544 QSER1Q2KHR3 1735 aa10.94□□□□□ -0.66
CNOT4-201ENST00000315544 MYBBP1AQ9BQG0 1328 aaKnown RBP10.94□□□□□ -0.66
CNOT4-201ENST00000315544 RPGRIP1LQ68CZ1 1315 aa10.93□□□□□ -0.66
CNOT4-201ENST00000315544 SIRT1Q96EB6 747 aa10.93□□□□□ -0.66
CNOT4-201ENST00000315544 TRIM52Q96A61 297 aa10.93□□□□□ -0.66
CNOT4-201ENST00000315544 SLIT3O75094 1523 aa10.92□□□□□ -0.66
CNOT4-201ENST00000315544 NCBP3Q53F19 620 aaKnown RBP10.92□□□□□ -0.66
CNOT4-201ENST00000315544 SLC4A1APQ9BWU0 796 aaKnown RBP10.92□□□□□ -0.66
CNOT4-201ENST00000315544 PNPLA6Q8IY17 1366 aa10.91□□□□□ -0.66
CNOT4-201ENST00000315544 ST20-MTHFSA0A0A6YYL1 179 aa10.91□□□□□ -0.66
CNOT4-201ENST00000315544 ANP32CO43423 234 aa10.91□□□□□ -0.66
CNOT4-201ENST00000315544 FKBP8Q14318 412 aa10.91□□□□□ -0.66
CNOT4-201ENST00000315544 NUDCQ9Y266 331 aa10.91□□□□□ -0.66
CNOT4-201ENST00000315544 USP19O94966 1318 aa10.9□□□□□ -0.66
CNOT4-201ENST00000315544 ADGRL3Q9HAR2 1447 aa10.9□□□□□ -0.66
CNOT4-201ENST00000315544 PARP4Q9UKK3 1724 aaKnown RBP10.9□□□□□ -0.66
CNOT4-201ENST00000315544 POLR3AO14802 1390 aaPredicted RBP10.89□□□□□ -0.67
CNOT4-201ENST00000315544 CARD14Q9BXL6 1004 aa10.89□□□□□ -0.67
CNOT4-201ENST00000315544 RREB1Q92766 1687 aa10.89□□□□□ -0.67
CNOT4-201ENST00000315544 ZNF831Q5JPB2 1677 aa10.88□□□□□ -0.67
CNOT4-201ENST00000315544 TNS1Q9HBL0 1735 aaKnown RBP10.88□□□□□ -0.67
CNOT4-201ENST00000315544 PPIP5K1Q6PFW1 1433 aa10.88□□□□□ -0.67
CNOT4-201ENST00000315544 TSPY4P0CV99 314 aa10.87□□□□□ -0.67
CNOT4-201ENST00000315544 TSPY10P0CW01 314 aa10.87□□□□□ -0.67
CNOT4-201ENST00000315544 GLI3P10071 1580 aa10.87□□□□□ -0.67
CNOT4-201ENST00000315544 DDX60Q8IY21 1712 aaKnown RBP10.87□□□□□ -0.67
CNOT4-201ENST00000315544 ANKARQ7Z5J8 1434 aa10.86□□□□□ -0.67
CNOT4-201ENST00000315544 SSH2Q76I76 1423 aa10.86□□□□□ -0.67
CNOT4-201ENST00000315544 COL14A1Q05707 1796 aaKnown RBP10.86□□□□□ -0.67
CNOT4-201ENST00000315544 FBXO31Q5XUX0 539 aaPredicted RBP10.86□□□□□ -0.67
CNOT4-201ENST00000315544 LTKP29376 864 aa10.85□□□□□ -0.67
CNOT4-201ENST00000315544 RALBP1Q15311 655 aa10.85□□□□□ -0.67
CNOT4-201ENST00000315544 STAC3Q96MF2 364 aa10.85□□□□□ -0.67
CNOT4-201ENST00000315544 PPP4R2Q9NY27 417 aa10.85□□□□□ -0.67
CNOT4-201ENST00000315544 ABCC11Q96J66 1382 aa10.85□□□□□ -0.67
CNOT4-201ENST00000315544 KIF3BO15066 747 aa10.85□□□□□ -0.67
CNOT4-201ENST00000315544 DUSP27Q5VZP5 1158 aa10.85□□□□□ -0.67
CNOT4-201ENST00000315544 SBF2Q86WG5 1849 aa10.84□□□□□ -0.67
CNOT4-201ENST00000315544 KDM3BQ7LBC6 1761 aa10.83□□□□□ -0.67
CNOT4-201ENST00000315544 ATP7BP35670 1465 aa10.83□□□□□ -0.68
CNOT4-201ENST00000315544 CDK12Q9NYV4 1490 aaPredicted RBP10.83□□□□□ -0.68
CNOT4-201ENST00000315544 PUS7Q96PZ0 661 aaKnown RBP10.83□□□□□ -0.68
CNOT4-201ENST00000315544 SPINK5Q9NQ38 1064 aaPredicted RBP10.83□□□□□ -0.68
CNOT4-201ENST00000315544 IDI1Q13907 227 aa10.82□□□□□ -0.68
CNOT4-201ENST00000315544 TBX22Q9Y458 520 aa10.82□□□□□ -0.68
CNOT4-201ENST00000315544 CPSF1Q10570 1443 aaKnown RBP10.82□□□□□ -0.68
CNOT4-201ENST00000315544 LTN1O94822 1766 aa10.82□□□□□ -0.68
CNOT4-201ENST00000315544 CEBPAP49715 358 aaPredicted RBP10.81□□□□□ -0.68
CNOT4-201ENST00000315544 DMRT2Q9Y5R5 561 aa10.81□□□□□ -0.68
CNOT4-201ENST00000315544 EIF3AQ14152 1382 aaKnown RBP10.81□□□□□ -0.68
CNOT4-201ENST00000315544 METP08581 1390 aa10.81□□□□□ -0.68
CNOT4-201ENST00000315544 BRWD3Q6RI45 1802 aa10.81□□□□□ -0.68
CNOT4-201ENST00000315544 PKD1L3Q7Z443 1732 aa10.81□□□□□ -0.68
CNOT4-201ENST00000315544 NFAT5O94916 1531 aa10.8□□□□□ -0.68
CNOT4-201ENST00000315544 YTHDC2Q9H6S0 1430 aaKnown RBP10.79□□□□□ -0.68
CNOT4-201ENST00000315544 LRP6O75581 1613 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms