RNA–Protein interactions for RNA: ENST00000309469.8

ATG4D-201, Transcript of autophagy related 4D cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4D, Length 1,949 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-201ENST00000309469 INSRP06213 1382 aa28.55■■■□□ 2.16
ATG4D-201ENST00000309469 ABCC11Q96J66 1382 aa28.55■■■□□ 2.16
ATG4D-201ENST00000309469 C3P01024 1663 aa28.54■■■□□ 2.16
ATG4D-201ENST00000309469 SRPK2P78362 688 aaKnown RBP28.54■■■□□ 2.16
ATG4D-201ENST00000309469 FER1L4A9Z1Z3 1794 aa28.53■■■□□ 2.16
ATG4D-201ENST00000309469 METP08581 1390 aa28.52■■■□□ 2.16
ATG4D-201ENST00000309469 ANKRD36BQ8N2N9 1353 aa28.52■■■□□ 2.16
ATG4D-201ENST00000309469 NINLQ9Y2I6 1382 aa28.52■■■□□ 2.16
ATG4D-201ENST00000309469 ATAD2Q6PL18 1390 aa28.49■■■□□ 2.15
ATG4D-201ENST00000309469 BCANQ96GW7 911 aa28.49■■■□□ 2.15
ATG4D-201ENST00000309469 SENP3-EIF4A1A0A087X0R7 540 aa28.48■■■□□ 2.15
ATG4D-201ENST00000309469 WAPLQ7Z5K2 1190 aa28.48■■■□□ 2.15
ATG4D-201ENST00000309469 PLPPR3Q6T4P5 718 aa28.47■■■□□ 2.15
ATG4D-201ENST00000309469 BLMP54132 1417 aaPredicted RBP28.47■■■□□ 2.15
ATG4D-201ENST00000309469 SMG6Q86US8 1419 aaKnown RBP28.47■■■□□ 2.15
ATG4D-201ENST00000309469 CDK19Q9BWU1 502 aa28.47■■■□□ 2.15
ATG4D-201ENST00000309469 USP32Q8NFA0 1604 aa28.46■■■□□ 2.15
ATG4D-201ENST00000309469 PLEKHH1Q9ULM0 1364 aa28.45■■■□□ 2.15
ATG4D-201ENST00000309469 CGNL1Q0VF96 1302 aa28.45■■■□□ 2.15
ATG4D-201ENST00000309469 LTKP29376 864 aa28.45■■■□□ 2.14
ATG4D-201ENST00000309469 MORC1Q86VD1 984 aa28.44■■■□□ 2.14
ATG4D-201ENST00000309469 SIRT1Q96EB6 747 aa28.44■■■□□ 2.14
ATG4D-201ENST00000309469 PLEKHG1Q9ULL1 1385 aa28.44■■■□□ 2.14
ATG4D-201ENST00000309469 ADAMTS8Q9UP79 889 aa28.43■■■□□ 2.14
ATG4D-201ENST00000309469 WDR43Q15061 677 aaKnown RBP eCLIP28.43■■■□□ 2.14
ATG4D-201ENST00000309469 TXNDC2Q86VQ3 553 aa28.43■■■□□ 2.14
ATG4D-201ENST00000309469 NUDCQ9Y266 331 aa28.42■■■□□ 2.14
ATG4D-201ENST00000309469 ADAMTS13Q76LX8 1427 aa28.42■■■□□ 2.14
ATG4D-201ENST00000309469 EID1Q9Y6B2 187 aa28.41■■■□□ 2.14
ATG4D-201ENST00000309469 TECPR2O15040 1411 aa28.41■■■□□ 2.14
ATG4D-201ENST00000309469 A0A1W2PP64 1363 aa28.4■■■□□ 2.14
ATG4D-201ENST00000309469 FAM135BQ49AJ0 1406 aa28.4■■■□□ 2.14
ATG4D-201ENST00000309469 TERF2IPQ9NYB0 399 aa28.39■■■□□ 2.14
ATG4D-201ENST00000309469 NSD2O96028 1365 aa28.39■■■□□ 2.13
ATG4D-201ENST00000309469 ARHGAP23Q9P227 1491 aa28.39■■■□□ 2.13
ATG4D-201ENST00000309469 SLIT1O75093 1534 aa28.39■■■□□ 2.13
ATG4D-201ENST00000309469 THEMISQ8N1K5 641 aaPredicted RBP28.37■■■□□ 2.13
ATG4D-201ENST00000309469 KNDC1Q76NI1 1749 aa28.37■■■□□ 2.13
ATG4D-201ENST00000309469 SALL2Q9Y467 1007 aaPredicted RBP28.35■■■□□ 2.13
ATG4D-201ENST00000309469 CD163L1Q9NR16 1453 aa28.35■■■□□ 2.13
ATG4D-201ENST00000309469 POLR3AO14802 1390 aaPredicted RBP28.34■■■□□ 2.13
ATG4D-201ENST00000309469 CABP1Q9NZU7 370 aa28.34■■■□□ 2.13
ATG4D-201ENST00000309469 CPS1P31327 1500 aa28.34■■■□□ 2.13
ATG4D-201ENST00000309469 PDE3BQ13370 1112 aa28.33■■■□□ 2.13
ATG4D-201ENST00000309469 MED14O60244 1454 aa28.33■■■□□ 2.13
ATG4D-201ENST00000309469 WASLO00401 505 aaPredicted RBP28.33■■■□□ 2.13
ATG4D-201ENST00000309469 HDGFL2Q7Z4V5 671 aaPredicted RBP28.32■■■□□ 2.12
ATG4D-201ENST00000309469 TNNT2P45379 298 aaPredicted RBP28.31■■■□□ 2.12
ATG4D-201ENST00000309469 SLC26A8Q96RN1 970 aa28.29■■■□□ 2.12
ATG4D-201ENST00000309469 ROBO2Q9HCK4 1378 aa28.28■■■□□ 2.12
ATG4D-201ENST00000309469 RIMS1Q86UR5 1692 aaKnown RBP28.27■■■□□ 2.12
ATG4D-201ENST00000309469 TBX22Q9Y458 520 aa28.27■■■□□ 2.12
ATG4D-201ENST00000309469 IRX6P78412 446 aaPredicted RBP28.26■■■□□ 2.11
ATG4D-201ENST00000309469 ATP7BP35670 1465 aa28.25■■■□□ 2.11
ATG4D-201ENST00000309469 FYB1O15117 783 aa28.24■■■□□ 2.11
ATG4D-201ENST00000309469 MTHFSP49914 203 aa28.24■■■□□ 2.11
ATG4D-201ENST00000309469 ERICH6BQ5W0A0 696 aa28.23■■■□□ 2.11
ATG4D-201ENST00000309469 GGNBP2Q9H3C7 697 aa28.23■■■□□ 2.11
ATG4D-201ENST00000309469 PTPRUQ92729 1446 aa28.23■■■□□ 2.11
ATG4D-201ENST00000309469 CEP170BQ9Y4F5 1589 aaPredicted RBP28.22■■■□□ 2.11
ATG4D-201ENST00000309469 ADAMTSL3P82987 1691 aa28.22■■■□□ 2.11
ATG4D-201ENST00000309469 NUDT16Q96DE0 195 aaKnown RBP28.22■■■□□ 2.11
ATG4D-201ENST00000309469 CFAP53Q96M91 514 aa28.2■■■□□ 2.11
ATG4D-201ENST00000309469 PPIP5K1Q6PFW1 1433 aa28.2■■■□□ 2.1
ATG4D-201ENST00000309469 RNF123Q5XPI4 1314 aa28.2■■■□□ 2.1
ATG4D-201ENST00000309469 CDCA7LQ96GN5 454 aa28.2■■■□□ 2.1
ATG4D-201ENST00000309469 CCDC146Q8IYE0 955 aa28.19■■■□□ 2.1
ATG4D-201ENST00000309469 AMOTL2Q9Y2J4 779 aa28.18■■■□□ 2.1
ATG4D-201ENST00000309469 CCDC61Q9Y6R9 512 aa28.18■■■□□ 2.1
ATG4D-201ENST00000309469 DIP2AQ14689 1571 aa28.18■■■□□ 2.1
ATG4D-201ENST00000309469 CPSF1Q10570 1443 aaKnown RBP28.17■■■□□ 2.1
ATG4D-201ENST00000309469 ADGRB2O60241 1585 aa28.15■■■□□ 2.1
ATG4D-201ENST00000309469 SHPRHQ149N8 1683 aa28.14■■■□□ 2.1
ATG4D-201ENST00000309469 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.14■■■□□ 2.1
ATG4D-201ENST00000309469 ANKRD26Q9UPS8 1709 aa28.14■■■□□ 2.1
ATG4D-201ENST00000309469 ZNF521Q96K83 1311 aa28.13■■■□□ 2.09
ATG4D-201ENST00000309469 APAF1O14727 1248 aa28.13■■■□□ 2.09
ATG4D-201ENST00000309469 PRR36Q9H6K5 1346 aa28.12■■■□□ 2.09
ATG4D-201ENST00000309469 NCKAP5LQ9HCH0 1330 aa28.12■■■□□ 2.09
ATG4D-201ENST00000309469 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.12■■■□□ 2.09
ATG4D-201ENST00000309469 PTCH1Q13635 1447 aa28.11■■■□□ 2.09
ATG4D-201ENST00000309469 EDC4Q6P2E9 1401 aaKnown RBP28.11■■■□□ 2.09
ATG4D-201ENST00000309469 NGEFQ8N5V2 710 aa28.1■■■□□ 2.09
ATG4D-201ENST00000309469 RCAN3Q9UKA8 241 aa28.1■■■□□ 2.09
ATG4D-201ENST00000309469 CDC42BPGQ6DT37 1551 aa28.1■■■□□ 2.09
ATG4D-201ENST00000309469 KIF20BQ96Q89 1820 aa28.09■■■□□ 2.09
ATG4D-201ENST00000309469 ANKLE2Q86XL3 938 aa28.08■■■□□ 2.09
ATG4D-201ENST00000309469 ZNF142P52746 1687 aaPredicted RBP28.07■■■□□ 2.08
ATG4D-201ENST00000309469 GOLGA2Q08379 1002 aa28.07■■■□□ 2.08
ATG4D-201ENST00000309469 ZNF692Q9BU19 519 aaPredicted RBP28.07■■■□□ 2.08
ATG4D-201ENST00000309469 PIK3R4Q99570 1358 aa28.07■■■□□ 2.08
ATG4D-201ENST00000309469 RUNDC1Q96C34 613 aa28.06■■■□□ 2.08
ATG4D-201ENST00000309469 PPP4R2Q9NY27 417 aa28.06■■■□□ 2.08
ATG4D-201ENST00000309469 XRN1Q8IZH2 1706 aaKnown RBP28.03■■■□□ 2.08
ATG4D-201ENST00000309469 PLEKHG3A1L390 1219 aa28.02■■■□□ 2.08
ATG4D-201ENST00000309469 NME9Q86XW9 330 aa28.01■■■□□ 2.07
ATG4D-201ENST00000309469 COL3A1P02461 1466 aaPredicted RBP28.01■■■□□ 2.07
ATG4D-201ENST00000309469 U2AF1L5P0DN76 240 aaPredicted RBP28■■■□□ 2.07
ATG4D-201ENST00000309469 U2AF1Q01081 240 aaKnown RBP eCLIP28■■■□□ 2.07
ATG4D-201ENST00000309469 SLFN5Q08AF3 891 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms