RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 LMOD2Q6P5Q4 547 aa6.34□□□□□ -1.4
SCN1A-201ENST00000303395 RBM25P49756 843 aaKnown RBP6.34□□□□□ -1.4
SCN1A-201ENST00000303395 GOLGA6L9A6NEM1 432 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 KIF20AO95235 890 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 AK7Q96M32 723 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 DCTN1Q14203 1278 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 MEX3CQ5U5Q3 659 aaKnown RBP6.33□□□□□ -1.4
SCN1A-201ENST00000303395 TAF7LQ5H9L4 462 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 B4GALNT3Q6L9W6 998 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 ANKRD50Q9ULJ7 1429 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 IQCEQ6IPM2 695 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 CCDC191Q8NCU4 936 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 CHMP7Q8WUX9 453 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-201ENST00000303395 IBTKQ9P2D0 1353 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-201ENST00000303395 TROQ12816 1431 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-201ENST00000303395 INTS3Q68E01 1043 aaKnown RBP6.33□□□□□ -1.4
SCN1A-201ENST00000303395 SRCIN1Q9C0H9 1055 aa6.33□□□□□ -1.4
SCN1A-201ENST00000303395 CALCOCO1Q9P1Z2 691 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 CTDP1Q9Y5B0 961 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-201ENST00000303395 ANKRD20A12PQ8NF67 263 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 REREQ9P2R6 1566 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 SH3BGRP55822 239 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-201ENST00000303395 GRIN2BQ13224 1484 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 PRDM2Q13029 1718 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 IL16Q14005 1332 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 VSIG10Q8N0Z9 540 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 CLUAP1Q96AJ1 413 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 MYO6Q9UM54 1294 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 LAMC3Q9Y6N6 1575 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 PAXIP1Q6ZW49 1069 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-201ENST00000303395 L3MBTL2Q969R5 705 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 GAPVD1Q14C86 1478 aa6.32□□□□□ -1.4
SCN1A-201ENST00000303395 NESP48681 1621 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 EIF3JO75822 258 aaKnown RBP6.31□□□□□ -1.4
SCN1A-201ENST00000303395 MORC1Q86VD1 984 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 ERLIN1O75477 346 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 SF3B2Q13435 895 aaKnown RBP6.31□□□□□ -1.4
SCN1A-201ENST00000303395 FANCD2Q9BXW9 1451 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 HSP90B2PQ58FF3 399 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 JAKMIP3Q5VZ66 844 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 AEBP2Q6ZN18 517 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-201ENST00000303395 YEATS2Q9ULM3 1422 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 TPD52L1Q16890 204 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-201ENST00000303395 R3HCC1Q9Y3T6 440 aaKnown RBP6.31□□□□□ -1.4
SCN1A-201ENST00000303395 NFKBIBQ15653 356 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 CPLX2Q6PUV4 134 aaKnown RBP6.31□□□□□ -1.4
SCN1A-201ENST00000303395 CDC45O75419 566 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-201ENST00000303395 V9GYY5 206 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-201ENST00000303395 PTPN23Q9H3S7 1636 aa6.31□□□□□ -1.4
SCN1A-201ENST00000303395 KDM5DQ9BY66 1539 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 MFAP1P55081 439 aaKnown RBP6.3□□□□□ -1.4
SCN1A-201ENST00000303395 ARID3AQ99856 593 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 ESPNB1AK53 854 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 NASPP49321 788 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-201ENST00000303395 ANKRD1Q15327 319 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 WWC2Q6AWC2 1192 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 TICAM2Q86XR7 235 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 SYNJ2O15056 1496 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 SRRTQ9BXP5 876 aaKnown RBP6.3□□□□□ -1.4
SCN1A-201ENST00000303395 ZKSCAN1P17029 563 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-201ENST00000303395 FEZ1Q99689 392 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 TRIM34Q9BYJ4 488 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 DDX49Q9Y6V7 483 aaKnown RBP6.3□□□□□ -1.4
SCN1A-201ENST00000303395 NAIPQ13075 1403 aa6.3□□□□□ -1.4
SCN1A-201ENST00000303395 IPO7O95373 1038 aaKnown RBP6.29□□□□□ -1.4
SCN1A-201ENST00000303395 PKD2Q13563 968 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 CT47A1Q5JQC4 288 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-201ENST00000303395 CCDC43Q96MW1 224 aaKnown RBP6.29□□□□□ -1.4
SCN1A-201ENST00000303395 IFT140Q96RY7 1462 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 MYO1BO43795 1136 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 RRP7BPQ9NSQ0 103 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 EVC2Q86UK5 1308 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 GOLGA6L19H0YKK7 550 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 CCDC97Q96F63 343 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-201ENST00000303395 GNAI1P63096 354 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 NKTRP30414 1462 aaKnown RBP6.29□□□□□ -1.4
SCN1A-201ENST00000303395 RUNDC1Q96C34 613 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 STK31Q9BXU1 1019 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 TUBB2AQ13885 445 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 TUBB2BQ9BVA1 445 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 KIAA0586Q9BVV6 1533 aa6.29□□□□□ -1.4
SCN1A-201ENST00000303395 IRX6P78412 446 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-201ENST00000303395 ZSCAN31Q96LW9 406 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-201ENST00000303395 PIK3C2GO75747 1445 aa6.28□□□□□ -1.4
SCN1A-201ENST00000303395 WDR33Q9C0J8 1336 aaKnown RBP6.28□□□□□ -1.4
SCN1A-201ENST00000303395 RGS3P49796 1198 aa6.28□□□□□ -1.4
SCN1A-201ENST00000303395 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.28□□□□□ -1.41e-6■■■□□ 16.7
SCN1A-201ENST00000303395 LUC7LQ9NQ29 371 aaKnown RBP6.28□□□□□ -1.4
SCN1A-201ENST00000303395 RNF123Q5XPI4 1314 aa6.28□□□□□ -1.4
SCN1A-201ENST00000303395 CNPY4Q8N129 248 aa6.28□□□□□ -1.4
SCN1A-201ENST00000303395 JMYQ8N9B5 988 aa6.28□□□□□ -1.4
SCN1A-201ENST00000303395 PSMA5P28066 241 aa6.28□□□□□ -1.4
SCN1A-201ENST00000303395 CTAGE5O15320 804 aa6.28□□□□□ -1.4
SCN1A-201ENST00000303395 RUFY1Q96T51 708 aa6.28□□□□□ -1.4
SCN1A-201ENST00000303395 HMGB1P1B2RPK0 211 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-201ENST00000303395 GORABQ5T7V8 394 aa6.28□□□□□ -1.4
SCN1A-201ENST00000303395 BCCIPQ9P287 314 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-201ENST00000303395 GOLGA6L7A0A1B0GV03 622 aa6.27□□□□□ -1.41
SCN1A-201ENST00000303395 GCC2Q8IWJ2 1684 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms