RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 ST18O60284 1047 aa9.54□□□□□ -0.88
SCN9A-201ENST00000303354 VPS37CA5D8V6 355 aaPredicted RBP9.54□□□□□ -0.88
SCN9A-201ENST00000303354 FANCD2Q9BXW9 1451 aa9.54□□□□□ -0.88
SCN9A-201ENST00000303354 MIS18AQ9NYP9 233 aa9.54□□□□□ -0.88
SCN9A-201ENST00000303354 RAPGEF2Q9Y4G8 1499 aa9.54□□□□□ -0.88
SCN9A-201ENST00000303354 TTLL5Q6EMB2 1281 aa9.54□□□□□ -0.88
SCN9A-201ENST00000303354 CCDC18Q5T9S5 1454 aa9.53□□□□□ -0.88
SCN9A-201ENST00000303354 TPM3P06753 285 aa9.53□□□□□ -0.88
SCN9A-201ENST00000303354 NLRP13Q86W25 1043 aa9.53□□□□□ -0.88
SCN9A-201ENST00000303354 PAF1Q8N7H5 531 aa9.53□□□□□ -0.88
SCN9A-201ENST00000303354 PANK1Q8TE04 598 aa9.53□□□□□ -0.88
SCN9A-201ENST00000303354 NAP1L1P55209 391 aaKnown RBP9.53□□□□□ -0.88
SCN9A-201ENST00000303354 CEBPZQ03701 1054 aaKnown RBP9.53□□□□□ -0.88
SCN9A-201ENST00000303354 TTC39AQ5SRH9 613 aa9.52□□□□□ -0.89
SCN9A-201ENST00000303354 CCER2I3L3R5 266 aa9.52□□□□□ -0.89
SCN9A-201ENST00000303354 VPS8Q8N3P4 1428 aa9.52□□□□□ -0.89
SCN9A-201ENST00000303354 TATP17735 454 aaPredicted RBP9.52□□□□□ -0.89
SCN9A-201ENST00000303354 PTCD1O75127 700 aaKnown RBP9.52□□□□□ -0.89
SCN9A-201ENST00000303354 CHMP4AQ9BY43 222 aa9.52□□□□□ -0.89
SCN9A-201ENST00000303354 CDK19Q9BWU1 502 aa9.52□□□□□ -0.89
SCN9A-201ENST00000303354 MYBBP1AQ9BQG0 1328 aaKnown RBP9.52□□□□□ -0.89
SCN9A-201ENST00000303354 STK3Q13188 491 aa9.51□□□□□ -0.89
SCN9A-201ENST00000303354 TRMT1LQ7Z2T5 733 aaKnown RBP9.51□□□□□ -0.89
SCN9A-201ENST00000303354 WDR70Q9NW82 654 aa9.51□□□□□ -0.89
SCN9A-201ENST00000303354 CCDC34Q96HJ3 373 aa9.51□□□□□ -0.89
SCN9A-201ENST00000303354 GPRASP1Q5JY77 1395 aa9.51□□□□□ -0.89
SCN9A-201ENST00000303354 MTHFSP49914 203 aa9.51□□□□□ -0.89
SCN9A-201ENST00000303354 BICD2Q8TD16 824 aa9.51□□□□□ -0.89
SCN9A-201ENST00000303354 ZHX3Q9H4I2 956 aa9.51□□□□□ -0.89
SCN9A-201ENST00000303354 TTLL12Q14166 644 aaPredicted RBP9.51□□□□□ -0.89
SCN9A-201ENST00000303354 CABP1Q9NZU7 370 aa9.51□□□□□ -0.89
SCN9A-201ENST00000303354 TSR1Q2NL82 804 aaKnown RBP9.5□□□□□ -0.89
SCN9A-201ENST00000303354 TPM2P07951 284 aa9.5□□□□□ -0.89
SCN9A-201ENST00000303354 BECN2A8MW95 431 aa9.5□□□□□ -0.89
SCN9A-201ENST00000303354 SYAP1Q96A49 352 aaPredicted RBP9.5□□□□□ -0.89
SCN9A-201ENST00000303354 RSPH4AQ5TD94 716 aa9.5□□□□□ -0.89
SCN9A-201ENST00000303354 VSIG10Q8N0Z9 540 aa9.5□□□□□ -0.89
SCN9A-201ENST00000303354 MPHOSPH10O00566 681 aaKnown RBP9.5□□□□□ -0.89
SCN9A-201ENST00000303354 SULT6B1Q6IMI4 303 aa9.5□□□□□ -0.89
SCN9A-201ENST00000303354 GOLGA6L19H0YKK7 550 aa9.5□□□□□ -0.89
SCN9A-201ENST00000303354 UBTFL1P0CB47 393 aaPredicted RBP9.5□□□□□ -0.89
SCN9A-201ENST00000303354 DHX57Q6P158 1386 aaKnown RBP9.49□□□□□ -0.89
SCN9A-201ENST00000303354 R3HCC1Q9Y3T6 440 aaKnown RBP9.49□□□□□ -0.89
SCN9A-201ENST00000303354 TSR2Q969E8 191 aaKnown RBP9.49□□□□□ -0.89
SCN9A-201ENST00000303354 PRDM11Q9NQV5 511 aa9.49□□□□□ -0.89
SCN9A-201ENST00000303354 SURF6O75683 361 aaKnown RBP9.49□□□□□ -0.89
SCN9A-201ENST00000303354 KIF15Q9NS87 1388 aa9.49□□□□□ -0.89
SCN9A-201ENST00000303354 GOLGA6L3A6NEY3 463 aa9.49□□□□□ -0.89
SCN9A-201ENST00000303354 FSD1Q9BTV5 496 aa9.49□□□□□ -0.89
SCN9A-201ENST00000303354 DDX49Q9Y6V7 483 aaKnown RBP9.49□□□□□ -0.89
SCN9A-201ENST00000303354 WAPLQ7Z5K2 1190 aa9.49□□□□□ -0.89
SCN9A-201ENST00000303354 WDR78Q5VTH9 848 aa9.48□□□□□ -0.89
SCN9A-201ENST00000303354 MPRIPQ6WCQ1 1025 aa9.48□□□□□ -0.89
SCN9A-201ENST00000303354 FKBP4Q02790 459 aaKnown RBP eCLIP9.48□□□□□ -0.89
SCN9A-201ENST00000303354 SLC12A5Q9H2X9 1139 aa9.48□□□□□ -0.89
SCN9A-201ENST00000303354 PRKAR2BP31323 418 aa9.48□□□□□ -0.89
SCN9A-201ENST00000303354 CSPP1Q1MSJ5 1256 aa9.48□□□□□ -0.89
SCN9A-201ENST00000303354 NGLY1Q96IV0 654 aa9.48□□□□□ -0.89
SCN9A-201ENST00000303354 BRPF1P55201 1214 aaPredicted RBP9.48□□□□□ -0.89
SCN9A-201ENST00000303354 PLEKHO1Q53GL0 409 aaPredicted RBP9.48□□□□□ -0.89
SCN9A-201ENST00000303354 RALYLQ86SE5 291 aaKnown RBP9.48□□□□□ -0.89
SCN9A-201ENST00000303354 C11orf95C9JLR9 678 aaPredicted RBP9.47□□□□□ -0.89
SCN9A-201ENST00000303354 DZIP1LQ8IYY4 767 aaKnown RBP9.47□□□□□ -0.89
SCN9A-201ENST00000303354 USP47Q96K76 1375 aa9.47□□□□□ -0.89
SCN9A-201ENST00000303354 CPLX2Q6PUV4 134 aaKnown RBP9.47□□□□□ -0.89
SCN9A-201ENST00000303354 E9PSI1 815 aa9.47□□□□□ -0.89
SCN9A-201ENST00000303354 NBPF1Q3BBV0 1214 aa9.47□□□□□ -0.89
SCN9A-201ENST00000303354 NUP133Q8WUM0 1156 aa9.47□□□□□ -0.89
SCN9A-201ENST00000303354 ZKSCAN1P17029 563 aaPredicted RBP9.47□□□□□ -0.89
SCN9A-201ENST00000303354 CT47A1Q5JQC4 288 aaPredicted RBP9.47□□□□□ -0.89
SCN9A-201ENST00000303354 PPM1FP49593 454 aaPredicted RBP9.47□□□□□ -0.89
SCN9A-201ENST00000303354 USP5P45974 858 aa9.46□□□□□ -0.89
SCN9A-201ENST00000303354 ANKLE2Q86XL3 938 aa9.46□□□□□ -0.89
SCN9A-201ENST00000303354 DHX37Q8IY37 1157 aaKnown RBP9.46□□□□□ -0.89
SCN9A-201ENST00000303354 PLCD3Q8N3E9 789 aa9.46□□□□□ -0.89
SCN9A-201ENST00000303354 RUFY2Q8WXA3 655 aa9.46□□□□□ -0.89
SCN9A-201ENST00000303354 RUNDC1Q96C34 613 aa9.46□□□□□ -0.89
SCN9A-201ENST00000303354 PDILTQ8N807 584 aa9.46□□□□□ -0.9
SCN9A-201ENST00000303354 CDCA7LQ96GN5 454 aa9.46□□□□□ -0.9
SCN9A-201ENST00000303354 ACSBG1Q96GR2 724 aa9.46□□□□□ -0.9
SCN9A-201ENST00000303354 ODF2Q5BJF6 829 aa9.46□□□□□ -0.9
SCN9A-201ENST00000303354 ARHGAP5Q13017 1502 aa9.45□□□□□ -0.9
SCN9A-201ENST00000303354 JARID2Q92833 1246 aaPredicted RBP9.45□□□□□ -0.9
SCN9A-201ENST00000303354 MATR3P43243 847 aaKnown RBP eCLIP9.45□□□□□ -0.91e-6■■■□□ 16.2
SCN9A-201ENST00000303354 DCTN1Q14203 1278 aa9.45□□□□□ -0.9
SCN9A-201ENST00000303354 SLC4A2P04920 1241 aa9.45□□□□□ -0.9
SCN9A-201ENST00000303354 EPS15P42566 896 aa9.45□□□□□ -0.9
SCN9A-201ENST00000303354 ZNF530Q6P9A1 599 aaPredicted RBP9.45□□□□□ -0.9
SCN9A-201ENST00000303354 KIF3AQ9Y496 699 aa9.45□□□□□ -0.9
SCN9A-201ENST00000303354 EXOSC9Q06265 439 aaKnown RBP9.45□□□□□ -0.9
SCN9A-201ENST00000303354 GOLGA6L1Q8N7Z2 621 aa9.45□□□□□ -0.9
SCN9A-201ENST00000303354 UACAQ9BZF9 1416 aa9.45□□□□□ -0.9
SCN9A-201ENST00000303354 SMC3Q9UQE7 1217 aa9.44□□□□□ -0.9
SCN9A-201ENST00000303354 RRP1P56182 461 aaKnown RBP9.44□□□□□ -0.9
SCN9A-201ENST00000303354 THEMISQ8N1K5 641 aaPredicted RBP9.44□□□□□ -0.9
SCN9A-201ENST00000303354 CCDC47Q96A33 483 aaKnown RBP9.44□□□□□ -0.9
SCN9A-201ENST00000303354 LRRFIP1Q32MZ4 808 aaKnown RBP9.44□□□□□ -0.9
SCN9A-201ENST00000303354 WWC2Q6AWC2 1192 aa9.44□□□□□ -0.9
SCN9A-201ENST00000303354 BTBD11A6QL63 1104 aa9.44□□□□□ -0.9
SCN9A-201ENST00000303354 TBC1D2BQ9UPU7 963 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms