RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 CCDC191Q8NCU4 936 aa9.21□□□□□ -0.94
SF3B3-201ENST00000302516 ANO8Q9HCE9 1232 aaPredicted RBP9.21□□□□□ -0.94
SF3B3-201ENST00000302516 CT47B1P0C2W7 299 aaPredicted RBP9.21□□□□□ -0.94
SF3B3-201ENST00000302516 PCMTD1Q96MG8 357 aaPredicted RBP9.21□□□□□ -0.94
SF3B3-201ENST00000302516 ZNF330Q9Y3S2 320 aaPredicted RBP9.21□□□□□ -0.94
SF3B3-201ENST00000302516 CUL7Q14999 1698 aa9.21□□□□□ -0.94
SF3B3-201ENST00000302516 PIP4K2AP48426 406 aaPredicted RBP9.21□□□□□ -0.94
SF3B3-201ENST00000302516 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.21□□□□□ -0.94
SF3B3-201ENST00000302516 TSPY26PQ9H489 355 aa9.21□□□□□ -0.94
SF3B3-201ENST00000302516 GAPVD1Q14C86 1478 aa9.2□□□□□ -0.94
SF3B3-201ENST00000302516 ERICH2A1L162 156 aa9.2□□□□□ -0.94
SF3B3-201ENST00000302516 PLIN1O60240 522 aa9.2□□□□□ -0.94
SF3B3-201ENST00000302516 DIAPH1O60610 1272 aaKnown RBP9.2□□□□□ -0.94
SF3B3-201ENST00000302516 SMG6Q86US8 1419 aaKnown RBP9.2□□□□□ -0.94
SF3B3-201ENST00000302516 CWC22Q9HCG8 908 aaKnown RBP9.2□□□□□ -0.94
SF3B3-201ENST00000302516 RRP7AQ9Y3A4 280 aaKnown RBP9.2□□□□□ -0.94
SF3B3-201ENST00000302516 NCOA2Q15596 1464 aa9.2□□□□□ -0.94
SF3B3-201ENST00000302516 POLA1P09884 1462 aaPredicted RBP9.19□□□□□ -0.94
SF3B3-201ENST00000302516 FGD5Q6ZNL6 1462 aa9.19□□□□□ -0.94
SF3B3-201ENST00000302516 G3V3G9 751 aa9.19□□□□□ -0.94
SF3B3-201ENST00000302516 DCAF8Q5TAQ9 597 aa9.19□□□□□ -0.94
SF3B3-201ENST00000302516 PRM3Q9NNZ6 103 aa9.19□□□□□ -0.94
SF3B3-201ENST00000302516 TDRD9Q8NDG6 1382 aaKnown RBP9.19□□□□□ -0.94
SF3B3-201ENST00000302516 FRAT2O75474 233 aaPredicted RBP9.19□□□□□ -0.94
SF3B3-201ENST00000302516 XBP1P17861 261 aa9.19□□□□□ -0.94
SF3B3-201ENST00000302516 TTC5Q8N0Z6 440 aa9.19□□□□□ -0.94
SF3B3-201ENST00000302516 HNRNPMP52272 730 aaKnown RBP eCLIP9.19□□□□□ -0.946e-7■■■■□ 25.4
SF3B3-201ENST00000302516 G3BP1Q13283 466 aaKnown RBP eCLIP9.19□□□□□ -0.941e-7■■□□□ 13.4
SF3B3-201ENST00000302516 LEKR1Q6ZMV7 388 aa9.19□□□□□ -0.94
SF3B3-201ENST00000302516 SMARCE1Q969G3 411 aa9.19□□□□□ -0.94
SF3B3-201ENST00000302516 CNTROBQ8N137 903 aa9.18□□□□□ -0.94
SF3B3-201ENST00000302516 RRP9O43818 475 aaKnown RBP9.18□□□□□ -0.94
SF3B3-201ENST00000302516 ARHGAP5Q13017 1502 aa9.18□□□□□ -0.94
SF3B3-201ENST00000302516 VPS37CA5D8V6 355 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-201ENST00000302516 DHX16O60231 1041 aaKnown RBP9.17□□□□□ -0.94
SF3B3-201ENST00000302516 SLC4A3P48751 1232 aa9.17□□□□□ -0.94
SF3B3-201ENST00000302516 TEFQ10587 303 aa9.17□□□□□ -0.94
SF3B3-201ENST00000302516 KINO60870 393 aaKnown RBP9.17□□□□□ -0.94
SF3B3-201ENST00000302516 CAGE1Q8TC20 777 aa9.17□□□□□ -0.94
SF3B3-201ENST00000302516 ZNF396Q96N95 335 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-201ENST00000302516 MLECQ14165 292 aa9.17□□□□□ -0.94
SF3B3-201ENST00000302516 IQCEQ6IPM2 695 aa9.17□□□□□ -0.94
SF3B3-201ENST00000302516 HFM1A2PYH4 1435 aa9.17□□□□□ -0.94
SF3B3-201ENST00000302516 TRAK2O60296 914 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 RIPK4P57078 832 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 CIZ1Q9ULV3 898 aaPredicted RBP9.16□□□□□ -0.94
SF3B3-201ENST00000302516 PDE3AQ14432 1141 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 EPS15P42566 896 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 NFXL1Q6ZNB6 911 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 H0YHG0 523 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 TRIM34Q9BYJ4 488 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 AEBP1Q8IUX7 1158 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 APAF1O14727 1248 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 RALYLQ86SE5 291 aaKnown RBP9.16□□□□□ -0.94
SF3B3-201ENST00000302516 NCBP3Q53F19 620 aaKnown RBP9.16□□□□□ -0.94
SF3B3-201ENST00000302516 GCC1Q96CN9 775 aa9.16□□□□□ -0.94
SF3B3-201ENST00000302516 BCL2L13Q9BXK5 485 aa9.15□□□□□ -0.94
SF3B3-201ENST00000302516 JMYQ8N9B5 988 aa9.15□□□□□ -0.94
SF3B3-201ENST00000302516 LUC7LQ9NQ29 371 aaKnown RBP9.15□□□□□ -0.94
SF3B3-201ENST00000302516 ANKRD1Q15327 319 aa9.15□□□□□ -0.94
SF3B3-201ENST00000302516 ANKRD50Q9ULJ7 1429 aa9.15□□□□□ -0.94
SF3B3-201ENST00000302516 CCDC192P0DO97 292 aa9.15□□□□□ -0.94
SF3B3-201ENST00000302516 ERC1Q8IUD2 1116 aa9.15□□□□□ -0.94
SF3B3-201ENST00000302516 TRIM5Q9C035 493 aa9.15□□□□□ -0.95
SF3B3-201ENST00000302516 EIF3JO75822 258 aaKnown RBP9.14□□□□□ -0.95
SF3B3-201ENST00000302516 TRAK1Q9UPV9 953 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 R3HCC1Q9Y3T6 440 aaKnown RBP9.14□□□□□ -0.95
SF3B3-201ENST00000302516 ERLIN1O75477 346 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 USP8P40818 1118 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 ZRSR2Q15696 482 aaKnown RBP9.14□□□□□ -0.95
SF3B3-201ENST00000302516 GTF2E1P29083 439 aaPredicted RBP9.14□□□□□ -0.95
SF3B3-201ENST00000302516 SART3Q15020 963 aaKnown RBP9.14□□□□□ -0.95
SF3B3-201ENST00000302516 ITSN2Q9NZM3 1697 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 GOLGA6L10A6NI86 522 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 ERLIN2O94905 339 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 NAP1L1P55209 391 aaKnown RBP9.14□□□□□ -0.95
SF3B3-201ENST00000302516 DACH1Q9UI36 760 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 GOLGA6L7A0A1B0GV03 622 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 FOXD4L6Q3SYB3 417 aaPredicted RBP9.14□□□□□ -0.95
SF3B3-201ENST00000302516 FILIP1LQ4L180 1135 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 FOXD4L3Q6VB84 417 aaPredicted RBP9.14□□□□□ -0.95
SF3B3-201ENST00000302516 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.14□□□□□ -0.95
SF3B3-201ENST00000302516 PDE4CQ08493 712 aa9.14□□□□□ -0.95
SF3B3-201ENST00000302516 SYNJ1O43426 1573 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 PTPN23Q9H3S7 1636 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 PLEKHH1Q9ULM0 1364 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 KIF2AO00139 706 aaPredicted RBP9.13□□□□□ -0.95
SF3B3-201ENST00000302516 CT47A1Q5JQC4 288 aaPredicted RBP9.13□□□□□ -0.95
SF3B3-201ENST00000302516 APPP05067 770 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 GNAI3P08754 354 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 TXLNAP40222 546 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 FKBP5Q13451 457 aaPredicted RBP9.13□□□□□ -0.95
SF3B3-201ENST00000302516 PDCL2Q8N4E4 241 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 TSPYL1Q9H0U9 437 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 CCDC141Q6ZP82 1450 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 CBFA2T2O43439 604 aa9.13□□□□□ -0.95
SF3B3-201ENST00000302516 PATL2C9JE40 543 aaKnown RBP9.12□□□□□ -0.95
SF3B3-201ENST00000302516 RUSC2Q8N2Y8 1516 aa9.12□□□□□ -0.95
SF3B3-201ENST00000302516 PTPRGP23470 1445 aa9.12□□□□□ -0.95
SF3B3-201ENST00000302516 WDR33Q9C0J8 1336 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms