RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 ARID3AQ99856 593 aa12.89□□□□□ -0.35
LMX1A-201ENST00000294816 NCLP19338 710 aaKnown RBP12.88□□□□□ -0.35
LMX1A-201ENST00000294816 TSR2Q969E8 191 aaKnown RBP12.88□□□□□ -0.35
LMX1A-201ENST00000294816 RBM10P98175 930 aaKnown RBP12.88□□□□□ -0.35
LMX1A-201ENST00000294816 AAMPQ13685 434 aa12.88□□□□□ -0.35
LMX1A-201ENST00000294816 CFAP70Q5T0N1 1121 aa12.87□□□□□ -0.35
LMX1A-201ENST00000294816 LNPKQ9C0E8 428 aa12.87□□□□□ -0.35
LMX1A-201ENST00000294816 MYO5CQ9NQX4 1742 aa12.87□□□□□ -0.35
LMX1A-201ENST00000294816 LAMC1P11047 1609 aa12.87□□□□□ -0.35
LMX1A-201ENST00000294816 U2AF1L5P0DN76 240 aaPredicted RBP12.87□□□□□ -0.35
LMX1A-201ENST00000294816 U2AF1Q01081 240 aaKnown RBP eCLIP12.87□□□□□ -0.35
LMX1A-201ENST00000294816 SCAF11Q99590 1463 aaKnown RBP12.87□□□□□ -0.35
LMX1A-201ENST00000294816 TPM2P07951 284 aa12.86□□□□□ -0.35
LMX1A-201ENST00000294816 MSNP26038 577 aaKnown RBP12.86□□□□□ -0.35
LMX1A-201ENST00000294816 SYNJ2O15056 1496 aa12.85□□□□□ -0.35
LMX1A-201ENST00000294816 NASPP49321 788 aaPredicted RBP12.85□□□□□ -0.35
LMX1A-201ENST00000294816 ZNF692Q9BU19 519 aaPredicted RBP12.85□□□□□ -0.35
LMX1A-201ENST00000294816 ISY1Q9ULR0 285 aaKnown RBP12.85□□□□□ -0.35
LMX1A-201ENST00000294816 SYCP2Q9BX26 1530 aa12.85□□□□□ -0.35
LMX1A-201ENST00000294816 SYNMO15061 1565 aa12.85□□□□□ -0.35
LMX1A-201ENST00000294816 GOLGA6L22H0YM25 854 aa12.84□□□□□ -0.35
LMX1A-201ENST00000294816 MTHFSP49914 203 aa12.84□□□□□ -0.35
LMX1A-201ENST00000294816 CFAP53Q96M91 514 aa12.84□□□□□ -0.35
LMX1A-201ENST00000294816 DDX49Q9Y6V7 483 aaKnown RBP12.84□□□□□ -0.35
LMX1A-201ENST00000294816 NPC1L1Q9UHC9 1359 aa12.84□□□□□ -0.35
LMX1A-201ENST00000294816 WDR63Q8IWG1 891 aa12.84□□□□□ -0.35
LMX1A-201ENST00000294816 IFT140Q96RY7 1462 aa12.84□□□□□ -0.35
LMX1A-201ENST00000294816 SKOR2Q2VWA4 1001 aaPredicted RBP12.84□□□□□ -0.35
LMX1A-201ENST00000294816 ARHGAP5Q13017 1502 aa12.84□□□□□ -0.35
LMX1A-201ENST00000294816 ARHGEF5Q12774 1597 aa12.84□□□□□ -0.35
LMX1A-201ENST00000294816 EXOSC9Q06265 439 aaKnown RBP12.83□□□□□ -0.36
LMX1A-201ENST00000294816 CHGAP10645 457 aaKnown RBP12.83□□□□□ -0.36
LMX1A-201ENST00000294816 SSFA2P28290 1259 aa12.83□□□□□ -0.36
LMX1A-201ENST00000294816 FAM13BQ9NYF5 915 aa12.83□□□□□ -0.36
LMX1A-201ENST00000294816 SAMD9LQ8IVG5 1584 aa12.83□□□□□ -0.36
LMX1A-201ENST00000294816 U2SURPO15042 1029 aaKnown RBP12.83□□□□□ -0.36
LMX1A-201ENST00000294816 SLC12A5Q9H2X9 1139 aa12.83□□□□□ -0.36
LMX1A-201ENST00000294816 TRIM27P14373 513 aa12.82□□□□□ -0.36
LMX1A-201ENST00000294816 CCDC173Q0VFZ6 552 aa12.82□□□□□ -0.36
LMX1A-201ENST00000294816 PDCL3Q9H2J4 239 aa12.82□□□□□ -0.36
LMX1A-201ENST00000294816 DDX19BQ9UMR2 479 aa12.82□□□□□ -0.36
LMX1A-201ENST00000294816 R3HCC1Q9Y3T6 440 aaKnown RBP12.82□□□□□ -0.36
LMX1A-201ENST00000294816 RTEL1-TNFRSF6BF6WH68 1400 aa12.82□□□□□ -0.36
LMX1A-201ENST00000294816 RBM42Q9BTD8 480 aaKnown RBP12.81□□□□□ -0.36
LMX1A-201ENST00000294816 POLR3AO14802 1390 aaPredicted RBP12.81□□□□□ -0.36
LMX1A-201ENST00000294816 NSD3Q9BZ95 1437 aa12.81□□□□□ -0.36
LMX1A-201ENST00000294816 ZMYM3Q14202 1370 aa12.81□□□□□ -0.36
LMX1A-201ENST00000294816 RAB3GAP1Q15042 981 aa12.81□□□□□ -0.36
LMX1A-201ENST00000294816 ZSCAN30Q86W11 494 aa12.81□□□□□ -0.36
LMX1A-201ENST00000294816 NOB1Q9ULX3 412 aaKnown RBP12.81□□□□□ -0.36
LMX1A-201ENST00000294816 TMEM57Q8N5G2 664 aa12.8□□□□□ -0.36
LMX1A-201ENST00000294816 SSH1Q8WYL5 1049 aa12.8□□□□□ -0.36
LMX1A-201ENST00000294816 TRAK1Q9UPV9 953 aa12.8□□□□□ -0.36
LMX1A-201ENST00000294816 SMC5Q8IY18 1101 aa12.8□□□□□ -0.36
LMX1A-201ENST00000294816 CIZ1Q9ULV3 898 aaPredicted RBP12.8□□□□□ -0.36
LMX1A-201ENST00000294816 ZBTB7CA1YPR0 619 aa12.8□□□□□ -0.36
LMX1A-201ENST00000294816 CD2BP2O95400 341 aaKnown RBP12.8□□□□□ -0.36
LMX1A-201ENST00000294816 ANKRD45Q5TZF3 282 aa12.8□□□□□ -0.36
LMX1A-201ENST00000294816 ABCA8O94911 1581 aa12.79□□□□□ -0.36
LMX1A-201ENST00000294816 HDAC1Q13547 482 aaPredicted RBP12.78□□□□□ -0.36
LMX1A-201ENST00000294816 ATF7IPQ6VMQ6 1270 aa12.78□□□□□ -0.36
LMX1A-201ENST00000294816 SNX21Q969T3 373 aa12.78□□□□□ -0.36
LMX1A-201ENST00000294816 PTMSP20962 102 aa12.78□□□□□ -0.36
LMX1A-201ENST00000294816 MCTP1Q6DN14 999 aa12.78□□□□□ -0.36
LMX1A-201ENST00000294816 CAVIN1Q6NZI2 390 aaKnown RBP12.78□□□□□ -0.36
LMX1A-201ENST00000294816 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.78□□□□□ -0.36
LMX1A-201ENST00000294816 RNF17Q9BXT8 1623 aaKnown RBP12.78□□□□□ -0.36
LMX1A-201ENST00000294816 PLXNC1O60486 1568 aa12.78□□□□□ -0.36
LMX1A-201ENST00000294816 SCAPERQ9BY12 1400 aa12.78□□□□□ -0.36
LMX1A-201ENST00000294816 K7ELQ4 463 aaPredicted RBP12.78□□□□□ -0.36
LMX1A-201ENST00000294816 RBM25P49756 843 aaKnown RBP12.78□□□□□ -0.36
LMX1A-201ENST00000294816 SENP3Q9H4L4 574 aaPredicted RBP12.78□□□□□ -0.36
LMX1A-201ENST00000294816 UNC13BO14795 1591 aa12.77□□□□□ -0.37
LMX1A-201ENST00000294816 ADGRF5Q8IZF2 1346 aa12.77□□□□□ -0.37
LMX1A-201ENST00000294816 GAS2L2Q8NHY3 880 aa12.77□□□□□ -0.37
LMX1A-201ENST00000294816 C1orf115Q9H7X2 142 aa12.77□□□□□ -0.37
LMX1A-201ENST00000294816 DDIT3P35638 169 aa12.77□□□□□ -0.37
LMX1A-201ENST00000294816 CHD1LQ86WJ1 897 aa12.77□□□□□ -0.37
LMX1A-201ENST00000294816 MADDQ8WXG6 1647 aa12.76□□□□□ -0.37
LMX1A-201ENST00000294816 XPCQ01831 940 aaPredicted RBP12.76□□□□□ -0.37
LMX1A-201ENST00000294816 CALD1Q05682 793 aaKnown RBP12.76□□□□□ -0.37
LMX1A-201ENST00000294816 KDM5AP29375 1690 aaKnown RBP12.76□□□□□ -0.37
LMX1A-201ENST00000294816 OFD1O75665 1012 aa12.76□□□□□ -0.37
LMX1A-201ENST00000294816 IQGAP1P46940 1657 aa12.76□□□□□ -0.37
LMX1A-201ENST00000294816 ERVK-7P63135 1459 aa12.76□□□□□ -0.37
LMX1A-201ENST00000294816 IQGAP3Q86VI3 1631 aa12.75□□□□□ -0.37
LMX1A-201ENST00000294816 BAG4O95429 457 aaKnown RBP12.75□□□□□ -0.37
LMX1A-201ENST00000294816 MAST1Q9Y2H9 1570 aa12.75□□□□□ -0.37
LMX1A-201ENST00000294816 NUCB1Q02818 461 aa12.74□□□□□ -0.37
LMX1A-201ENST00000294816 MYOM1P52179 1685 aa12.74□□□□□ -0.37
LMX1A-201ENST00000294816 CDC42BPBQ9Y5S2 1711 aa12.74□□□□□ -0.37
LMX1A-201ENST00000294816 PPP1R9BQ96SB3 815 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 NCOA3Q9Y6Q9 1424 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 IPO8O15397 1037 aaKnown RBP12.73□□□□□ -0.37
LMX1A-201ENST00000294816 CCDC27Q2M243 656 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 FOXD4L5Q5VV16 416 aaPredicted RBP12.73□□□□□ -0.37
LMX1A-201ENST00000294816 TBC1D9Q6ZT07 1266 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 FOXD4L4Q8WXT5 416 aaPredicted RBP12.73□□□□□ -0.37
LMX1A-201ENST00000294816 ATP10AO60312 1499 aa12.73□□□□□ -0.37
LMX1A-201ENST00000294816 UQCRHLA0A096LP55 91 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms