RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 YTHDC2Q9H6S0 1430 aaKnown RBP22.82■■□□□ 1.24
CPSF4-201ENST00000292476 PUS7Q96PZ0 661 aaKnown RBP22.81■■□□□ 1.24
CPSF4-201ENST00000292476 KTN1Q86UP2 1357 aaKnown RBP22.81■■□□□ 1.24
CPSF4-201ENST00000292476 FKBP8Q14318 412 aa22.81■■□□□ 1.24
CPSF4-201ENST00000292476 RBM33Q96EV2 1170 aaKnown RBP22.79■■□□□ 1.24
CPSF4-201ENST00000292476 XIRP1Q702N8 1843 aaKnown RBP22.79■■□□□ 1.24
CPSF4-201ENST00000292476 ASXL1Q8IXJ9 1541 aa22.78■■□□□ 1.24
CPSF4-201ENST00000292476 UBAP1LF5GYI3 381 aa22.78■■□□□ 1.24
CPSF4-201ENST00000292476 QRICH2Q9H0J4 1663 aa22.78■■□□□ 1.24
CPSF4-201ENST00000292476 PROSER2Q86WR7 435 aaPredicted RBP22.77■■□□□ 1.24
CPSF4-201ENST00000292476 ARHGEF28Q8N1W1 1705 aaKnown RBP22.77■■□□□ 1.24
CPSF4-201ENST00000292476 LRPPRCP42704 1394 aaKnown RBP22.77■■□□□ 1.24
CPSF4-201ENST00000292476 NKTRP30414 1462 aaKnown RBP22.77■■□□□ 1.24
CPSF4-201ENST00000292476 EVC2Q86UK5 1308 aa22.77■■□□□ 1.23
CPSF4-201ENST00000292476 METP08581 1390 aa22.76■■□□□ 1.23
CPSF4-201ENST00000292476 PTPRUQ92729 1446 aa22.76■■□□□ 1.23
CPSF4-201ENST00000292476 HNRNPUQ00839 825 aaKnown RBP eCLIP22.76■■□□□ 1.23
CPSF4-201ENST00000292476 DLC1Q96QB1 1528 aa22.76■■□□□ 1.23
CPSF4-201ENST00000292476 TMEM94Q12767 1356 aa22.76■■□□□ 1.23
CPSF4-201ENST00000292476 PIK3R4Q99570 1358 aa22.76■■□□□ 1.23
CPSF4-201ENST00000292476 STK26Q9P289 416 aa22.75■■□□□ 1.23
CPSF4-201ENST00000292476 ABCC11Q96J66 1382 aa22.75■■□□□ 1.23
CPSF4-201ENST00000292476 POGKQ9P215 609 aa22.74■■□□□ 1.23
CPSF4-201ENST00000292476 SIRT1Q96EB6 747 aa22.74■■□□□ 1.23
CPSF4-201ENST00000292476 AMOTL2Q9Y2J4 779 aa22.74■■□□□ 1.23
CPSF4-201ENST00000292476 SETD1AO15047 1707 aaKnown RBP22.74■■□□□ 1.23
CPSF4-201ENST00000292476 MYT1Q01538 1121 aa22.73■■□□□ 1.23
CPSF4-201ENST00000292476 RALBP1Q15311 655 aa22.73■■□□□ 1.23
CPSF4-201ENST00000292476 PANK3Q9H999 370 aa22.72■■□□□ 1.23
CPSF4-201ENST00000292476 PER1O15534 1290 aaPredicted RBP22.71■■□□□ 1.23
CPSF4-201ENST00000292476 XRN1Q8IZH2 1706 aaKnown RBP22.7■■□□□ 1.22
CPSF4-201ENST00000292476 TOM1O60784 492 aa22.69■■□□□ 1.22
CPSF4-201ENST00000292476 PIP4K2BP78356 416 aa22.69■■□□□ 1.22
CPSF4-201ENST00000292476 ERICH6BQ5W0A0 696 aa22.69■■□□□ 1.22
CPSF4-201ENST00000292476 PRAM1Q96QH2 718 aa22.69■■□□□ 1.22
CPSF4-201ENST00000292476 TSHZ2Q9NRE2 1034 aa22.69■■□□□ 1.22
CPSF4-201ENST00000292476 KNSTRNQ9Y448 316 aa22.68■■□□□ 1.22
CPSF4-201ENST00000292476 ZBED9Q6R2W3 1325 aa22.67■■□□□ 1.22
CPSF4-201ENST00000292476 MRS2Q9HD23 443 aa22.67■■□□□ 1.22
CPSF4-201ENST00000292476 TECPR2O15040 1411 aa22.67■■□□□ 1.22
CPSF4-201ENST00000292476 FAM135BQ49AJ0 1406 aa22.67■■□□□ 1.22
CPSF4-201ENST00000292476 NINLQ9Y2I6 1382 aa22.66■■□□□ 1.22
CPSF4-201ENST00000292476 KNDC1Q76NI1 1749 aa22.65■■□□□ 1.22
CPSF4-201ENST00000292476 C14orf37Q86TY3 774 aa22.65■■□□□ 1.22
CPSF4-201ENST00000292476 MYOM1P52179 1685 aa22.63■■□□□ 1.21
CPSF4-201ENST00000292476 MSH6P52701 1360 aa22.62■■□□□ 1.21
CPSF4-201ENST00000292476 ATAD2Q6PL18 1390 aa22.62■■□□□ 1.21
CPSF4-201ENST00000292476 NPC1L1Q9UHC9 1359 aa22.62■■□□□ 1.21
CPSF4-201ENST00000292476 CCDC184Q52MB2 194 aa22.62■■□□□ 1.21
CPSF4-201ENST00000292476 TULP4Q9NRJ4 1543 aa22.61■■□□□ 1.21
CPSF4-201ENST00000292476 MYBBP1AQ9BQG0 1328 aaKnown RBP22.61■■□□□ 1.21
CPSF4-201ENST00000292476 SAFB2Q14151 953 aaKnown RBP eCLIP22.61■■□□□ 1.21
CPSF4-201ENST00000292476 PARD3Q8TEW0 1356 aa22.6■■□□□ 1.21
CPSF4-201ENST00000292476 SRPK2P78362 688 aaKnown RBP22.6■■□□□ 1.21
CPSF4-201ENST00000292476 MINK1Q8N4C8 1332 aaPredicted RBP22.59■■□□□ 1.21
CPSF4-201ENST00000292476 TMC1Q8TDI8 760 aa22.58■■□□□ 1.21
CPSF4-201ENST00000292476 ROBO2Q9HCK4 1378 aa22.58■■□□□ 1.21
CPSF4-201ENST00000292476 NCOA3Q9Y6Q9 1424 aa22.58■■□□□ 1.2
CPSF4-201ENST00000292476 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.57■■□□□ 1.2
CPSF4-201ENST00000292476 PTCH1Q13635 1447 aa22.56■■□□□ 1.2
CPSF4-201ENST00000292476 BRD4O60885 1362 aaPredicted RBP22.56■■□□□ 1.2
CPSF4-201ENST00000292476 WAPLQ7Z5K2 1190 aa22.55■■□□□ 1.2
CPSF4-201ENST00000292476 NLRP13Q86W25 1043 aa22.55■■□□□ 1.2
CPSF4-201ENST00000292476 CDK19Q9BWU1 502 aa22.55■■□□□ 1.2
CPSF4-201ENST00000292476 C19orf44Q9H6X5 657 aa22.55■■□□□ 1.2
CPSF4-201ENST00000292476 CABP2Q9NPB3 220 aa22.55■■□□□ 1.2
CPSF4-201ENST00000292476 AMER1Q5JTC6 1135 aaPredicted RBP22.54■■□□□ 1.2
CPSF4-201ENST00000292476 NALCNQ8IZF0 1738 aa22.53■■□□□ 1.2
CPSF4-201ENST00000292476 CNGB1Q14028 1251 aaPredicted RBP22.53■■□□□ 1.2
CPSF4-201ENST00000292476 CC2D1BQ5T0F9 858 aaKnown RBP22.53■■□□□ 1.2
CPSF4-201ENST00000292476 FAM9BQ8IZU0 186 aa22.53■■□□□ 1.2
CPSF4-201ENST00000292476 SLC12A5Q9H2X9 1139 aa22.53■■□□□ 1.2
CPSF4-201ENST00000292476 ANKRD36BQ8N2N9 1353 aa22.53■■□□□ 1.2
CPSF4-201ENST00000292476 ATF3P18847 181 aa22.52■■□□□ 1.2
CPSF4-201ENST00000292476 TERF2IPQ9NYB0 399 aa22.52■■□□□ 1.2
CPSF4-201ENST00000292476 ADGRL3Q9HAR2 1447 aa22.51■■□□□ 1.19
CPSF4-201ENST00000292476 PLEKHH1Q9ULM0 1364 aa22.51■■□□□ 1.19
CPSF4-201ENST00000292476 WASLO00401 505 aaPredicted RBP22.51■■□□□ 1.19
CPSF4-201ENST00000292476 HSPA1LP34931 641 aa22.51■■□□□ 1.19
CPSF4-201ENST00000292476 SLAIN2Q9P270 581 aa22.5■■□□□ 1.19
CPSF4-201ENST00000292476 CADPS2Q86UW7 1296 aa22.49■■□□□ 1.19
CPSF4-201ENST00000292476 ROBO1Q9Y6N7 1651 aa22.49■■□□□ 1.19
CPSF4-201ENST00000292476 CARD14Q9BXL6 1004 aa22.49■■□□□ 1.19
CPSF4-201ENST00000292476 SMG6Q86US8 1419 aaKnown RBP22.48■■□□□ 1.19
CPSF4-201ENST00000292476 CGNL1Q0VF96 1302 aa22.47■■□□□ 1.19
CPSF4-201ENST00000292476 HDGFL2Q7Z4V5 671 aaPredicted RBP22.47■■□□□ 1.19
CPSF4-201ENST00000292476 DCCP43146 1447 aa22.46■■□□□ 1.19
CPSF4-201ENST00000292476 NSD3Q9BZ95 1437 aa22.46■■□□□ 1.19
CPSF4-201ENST00000292476 NSD2O96028 1365 aa22.46■■□□□ 1.19
CPSF4-201ENST00000292476 USP32Q8NFA0 1604 aa22.46■■□□□ 1.19
CPSF4-201ENST00000292476 ADGRB2O60241 1585 aa22.45■■□□□ 1.18
CPSF4-201ENST00000292476 MST1RQ04912 1400 aa22.42■■□□□ 1.18
CPSF4-201ENST00000292476 ATP7BP35670 1465 aa22.42■■□□□ 1.18
CPSF4-201ENST00000292476 PPP4R2Q9NY27 417 aa22.42■■□□□ 1.18
CPSF4-201ENST00000292476 PNISRQ8TF01 805 aaKnown RBP22.41■■□□□ 1.18
CPSF4-201ENST00000292476 CCDC61Q9Y6R9 512 aa22.41■■□□□ 1.18
CPSF4-201ENST00000292476 CABP1Q9NZU7 370 aa22.4■■□□□ 1.18
CPSF4-201ENST00000292476 A0A1W2PP64 1363 aa22.4■■□□□ 1.18
CPSF4-201ENST00000292476 PPP2R1AP30153 589 aa22.39■■□□□ 1.18
CPSF4-201ENST00000292476 NUDT16Q96DE0 195 aaKnown RBP22.39■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms