RNA–Protein interactions for RNA: ENST00000291300.8

HIF3A-203, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-203ENST00000291300 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.52■■□□□ 1.2
HIF3A-203ENST00000291300 LTKP29376 864 aa22.51■■□□□ 1.19
HIF3A-203ENST00000291300 SRPK2P78362 688 aaKnown RBP22.5■■□□□ 1.19
HIF3A-203ENST00000291300 PUS7Q96PZ0 661 aaKnown RBP22.48■■□□□ 1.19
HIF3A-203ENST00000291300 NLRP1Q9C000 1473 aa22.48■■□□□ 1.19
HIF3A-203ENST00000291300 BCANQ96GW7 911 aa22.48■■□□□ 1.19
HIF3A-203ENST00000291300 SALL2Q9Y467 1007 aaPredicted RBP22.48■■□□□ 1.19
HIF3A-203ENST00000291300 DLC1Q96QB1 1528 aa22.47■■□□□ 1.19
HIF3A-203ENST00000291300 ABCC11Q96J66 1382 aa22.47■■□□□ 1.19
HIF3A-203ENST00000291300 TXNDC2Q86VQ3 553 aa22.46■■□□□ 1.19
HIF3A-203ENST00000291300 CDK19Q9BWU1 502 aa22.46■■□□□ 1.19
HIF3A-203ENST00000291300 ADAMTS8Q9UP79 889 aa22.46■■□□□ 1.19
HIF3A-203ENST00000291300 ANKRD36BQ8N2N9 1353 aa22.45■■□□□ 1.18
HIF3A-203ENST00000291300 ADAMTS13Q76LX8 1427 aa22.45■■□□□ 1.18
HIF3A-203ENST00000291300 IRX6P78412 446 aaPredicted RBP22.44■■□□□ 1.18
HIF3A-203ENST00000291300 BLMP54132 1417 aaPredicted RBP22.43■■□□□ 1.18
HIF3A-203ENST00000291300 A0A1W2PP64 1363 aa22.43■■□□□ 1.18
HIF3A-203ENST00000291300 TNNT2P45379 298 aaPredicted RBP22.43■■□□□ 1.18
HIF3A-203ENST00000291300 CD163L1Q9NR16 1453 aa22.43■■□□□ 1.18
HIF3A-203ENST00000291300 USP32Q8NFA0 1604 aa22.42■■□□□ 1.18
HIF3A-203ENST00000291300 HDGFP51858 240 aaKnown RBP22.42■■□□□ 1.18
HIF3A-203ENST00000291300 SMG6Q86US8 1419 aaKnown RBP22.41■■□□□ 1.18
HIF3A-203ENST00000291300 RIMS1Q86UR5 1692 aaKnown RBP22.4■■□□□ 1.18
HIF3A-203ENST00000291300 NEFLP07196 543 aa22.39■■□□□ 1.18
HIF3A-203ENST00000291300 MORC1Q86VD1 984 aa22.39■■□□□ 1.18
HIF3A-203ENST00000291300 ATAD2Q6PL18 1390 aa22.39■■□□□ 1.17
HIF3A-203ENST00000291300 SLC26A8Q96RN1 970 aa22.39■■□□□ 1.17
HIF3A-203ENST00000291300 PLEKHG1Q9ULL1 1385 aa22.38■■□□□ 1.17
HIF3A-203ENST00000291300 KNDC1Q76NI1 1749 aa22.38■■□□□ 1.17
HIF3A-203ENST00000291300 NUDCQ9Y266 331 aa22.38■■□□□ 1.17
HIF3A-203ENST00000291300 CGNL1Q0VF96 1302 aa22.38■■□□□ 1.17
HIF3A-203ENST00000291300 CABP1Q9NZU7 370 aa22.37■■□□□ 1.17
HIF3A-203ENST00000291300 ARHGAP23Q9P227 1491 aa22.37■■□□□ 1.17
HIF3A-203ENST00000291300 SLIT1O75093 1534 aa22.37■■□□□ 1.17
HIF3A-203ENST00000291300 ROBO2Q9HCK4 1378 aa22.37■■□□□ 1.17
HIF3A-203ENST00000291300 TECPR2O15040 1411 aa22.36■■□□□ 1.17
HIF3A-203ENST00000291300 CPS1P31327 1500 aa22.35■■□□□ 1.17
HIF3A-203ENST00000291300 WDR43Q15061 677 aaKnown RBP eCLIP22.35■■□□□ 1.17
HIF3A-203ENST00000291300 INSRP06213 1382 aa22.35■■□□□ 1.17
HIF3A-203ENST00000291300 MED14O60244 1454 aa22.35■■□□□ 1.17
HIF3A-203ENST00000291300 NINLQ9Y2I6 1382 aa22.34■■□□□ 1.17
HIF3A-203ENST00000291300 PTPRUQ92729 1446 aa22.34■■□□□ 1.17
HIF3A-203ENST00000291300 NCKAP5LQ9HCH0 1330 aa22.33■■□□□ 1.17
HIF3A-203ENST00000291300 CDCA7LQ96GN5 454 aa22.33■■□□□ 1.17
HIF3A-203ENST00000291300 FAM135BQ49AJ0 1406 aa22.32■■□□□ 1.16
HIF3A-203ENST00000291300 WASLO00401 505 aaPredicted RBP22.32■■□□□ 1.16
HIF3A-203ENST00000291300 CCDC146Q8IYE0 955 aa22.32■■□□□ 1.16
HIF3A-203ENST00000291300 GGNBP2Q9H3C7 697 aa22.32■■□□□ 1.16
HIF3A-203ENST00000291300 EID1Q9Y6B2 187 aa22.32■■□□□ 1.16
HIF3A-203ENST00000291300 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.3■■□□□ 1.16
HIF3A-203ENST00000291300 ADAMTSL3P82987 1691 aa22.3■■□□□ 1.16
HIF3A-203ENST00000291300 SHPRHQ149N8 1683 aa22.3■■□□□ 1.16
HIF3A-203ENST00000291300 THEMISQ8N1K5 641 aaPredicted RBP22.3■■□□□ 1.16
HIF3A-203ENST00000291300 TERF2IPQ9NYB0 399 aa22.3■■□□□ 1.16
HIF3A-203ENST00000291300 FYB1O15117 783 aa22.29■■□□□ 1.16
HIF3A-203ENST00000291300 SIRT1Q96EB6 747 aa22.29■■□□□ 1.16
HIF3A-203ENST00000291300 CEP170BQ9Y4F5 1589 aaPredicted RBP22.29■■□□□ 1.16
HIF3A-203ENST00000291300 POLR3AO14802 1390 aaPredicted RBP22.29■■□□□ 1.16
HIF3A-203ENST00000291300 MTHFSP49914 203 aa22.28■■□□□ 1.16
HIF3A-203ENST00000291300 NSD2O96028 1365 aa22.27■■□□□ 1.15
HIF3A-203ENST00000291300 PRR36Q9H6K5 1346 aa22.26■■□□□ 1.15
HIF3A-203ENST00000291300 HDGFL2Q7Z4V5 671 aaPredicted RBP22.25■■□□□ 1.15
HIF3A-203ENST00000291300 NUDT16Q96DE0 195 aaKnown RBP22.25■■□□□ 1.15
HIF3A-203ENST00000291300 PPIP5K1Q6PFW1 1433 aa22.25■■□□□ 1.15
HIF3A-203ENST00000291300 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.24■■□□□ 1.15
HIF3A-203ENST00000291300 AMOTL2Q9Y2J4 779 aa22.24■■□□□ 1.15
HIF3A-203ENST00000291300 ANKRD26Q9UPS8 1709 aa22.23■■□□□ 1.15
HIF3A-203ENST00000291300 TBX22Q9Y458 520 aa22.22■■□□□ 1.15
HIF3A-203ENST00000291300 ATP7BP35670 1465 aa22.22■■□□□ 1.15
HIF3A-203ENST00000291300 KIF20BQ96Q89 1820 aa22.22■■□□□ 1.15
HIF3A-203ENST00000291300 APAF1O14727 1248 aa22.21■■□□□ 1.15
HIF3A-203ENST00000291300 CPSF1Q10570 1443 aaKnown RBP22.21■■□□□ 1.15
HIF3A-203ENST00000291300 NUTM2FA1L443 756 aa22.21■■□□□ 1.15
HIF3A-203ENST00000291300 FBLN1P23142 703 aa22.2■■□□□ 1.14
HIF3A-203ENST00000291300 PDE3BQ13370 1112 aa22.2■■□□□ 1.14
HIF3A-203ENST00000291300 RNF123Q5XPI4 1314 aa22.2■■□□□ 1.14
HIF3A-203ENST00000291300 ZNF521Q96K83 1311 aa22.19■■□□□ 1.14
HIF3A-203ENST00000291300 ADGRB2O60241 1585 aa22.18■■□□□ 1.14
HIF3A-203ENST00000291300 ZRANB1Q9UGI0 708 aa22.18■■□□□ 1.14
HIF3A-203ENST00000291300 CCDC61Q9Y6R9 512 aa22.18■■□□□ 1.14
HIF3A-203ENST00000291300 CDC42BPGQ6DT37 1551 aa22.17■■□□□ 1.14
HIF3A-203ENST00000291300 ZNF142P52746 1687 aaPredicted RBP22.16■■□□□ 1.14
HIF3A-203ENST00000291300 NME9Q86XW9 330 aa22.15■■□□□ 1.14
HIF3A-203ENST00000291300 DIP2AQ14689 1571 aa22.15■■□□□ 1.14
HIF3A-203ENST00000291300 XRN1Q8IZH2 1706 aaKnown RBP22.15■■□□□ 1.14
HIF3A-203ENST00000291300 DMRT2Q9Y5R5 561 aa22.14■■□□□ 1.13
HIF3A-203ENST00000291300 MON2Q7Z3U7 1717 aa22.14■■□□□ 1.13
HIF3A-203ENST00000291300 COL3A1P02461 1466 aaPredicted RBP22.14■■□□□ 1.13
HIF3A-203ENST00000291300 AKAP12Q02952 1782 aa22.14■■□□□ 1.13
HIF3A-203ENST00000291300 KCNA6P17658 529 aa22.13■■□□□ 1.13
HIF3A-203ENST00000291300 SPINK5Q9NQ38 1064 aaPredicted RBP22.13■■□□□ 1.13
HIF3A-203ENST00000291300 RCAN3Q9UKA8 241 aa22.13■■□□□ 1.13
HIF3A-203ENST00000291300 PTCH1Q13635 1447 aa22.12■■□□□ 1.13
HIF3A-203ENST00000291300 EDC4Q6P2E9 1401 aaKnown RBP22.12■■□□□ 1.13
HIF3A-203ENST00000291300 CFAP53Q96M91 514 aa22.12■■□□□ 1.13
HIF3A-203ENST00000291300 NKTRP30414 1462 aaKnown RBP22.12■■□□□ 1.13
HIF3A-203ENST00000291300 TOPAZ1Q8N9V7 1692 aa22.12■■□□□ 1.13
HIF3A-203ENST00000291300 ITSN1Q15811 1721 aa22.11■■□□□ 1.13
HIF3A-203ENST00000291300 SETD1BQ9UPS6 1966 aaKnown RBP22.1■■□□□ 1.13
HIF3A-203ENST00000291300 RRP7AQ9Y3A4 280 aaKnown RBP22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms