RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 TOGARAM1Q9Y4F4 1720 aa8.78□□□□□ -1
TOPBP1-201ENST00000260810 CLSPNQ9HAW4 1339 aa8.77□□□□□ -1.01
TOPBP1-201ENST00000260810 WNK3Q9BYP7 1800 aa8.76□□□□□ -1.01
TOPBP1-201ENST00000260810 ROBO2Q9HCK4 1378 aa8.76□□□□□ -1.01
TOPBP1-201ENST00000260810 PRR36Q9H6K5 1346 aa8.76□□□□□ -1.01
TOPBP1-201ENST00000260810 NHSL1Q5SYE7 1610 aa8.75□□□□□ -1.01
TOPBP1-201ENST00000260810 CCDC144AA2RUR9 1427 aa8.74□□□□□ -1.01
TOPBP1-201ENST00000260810 FRYLO94915 3013 aa8.74□□□□□ -1.01
TOPBP1-201ENST00000260810 KIF7Q2M1P5 1343 aa8.74□□□□□ -1.01
TOPBP1-201ENST00000260810 NFAT5O94916 1531 aa8.74□□□□□ -1.01
TOPBP1-201ENST00000260810 LRRC37A3O60309 1634 aa8.73□□□□□ -1.01
TOPBP1-201ENST00000260810 BPTFQ12830 3046 aa8.72□□□□□ -1.01
TOPBP1-201ENST00000260810 CPSF1Q10570 1443 aaKnown RBP8.72□□□□□ -1.01
TOPBP1-201ENST00000260810 ZNF777Q9ULD5 760 aaPredicted RBP8.72□□□□□ -1.01
TOPBP1-201ENST00000260810 COL4A1P02462 1669 aa8.72□□□□□ -1.01
TOPBP1-201ENST00000260810 IQSEC2Q5JU85 1478 aa8.71□□□□□ -1.01
TOPBP1-201ENST00000260810 SPAG9O60271 1321 aaKnown RBP8.71□□□□□ -1.02
TOPBP1-201ENST00000260810 EFCAB2Q5VUJ9 269 aa8.71□□□□□ -1.02
TOPBP1-201ENST00000260810 WDFY4Q6ZS81 3184 aa8.71□□□□□ -1.02
TOPBP1-201ENST00000260810 MIER1Q8N108 512 aa8.71□□□□□ -1.02
TOPBP1-201ENST00000260810 NRAPQ86VF7 1730 aa8.7□□□□□ -1.02
TOPBP1-201ENST00000260810 ASPMQ8IZT6 3477 aa8.69□□□□□ -1.02
TOPBP1-201ENST00000260810 VPS13AQ96RL7 3174 aa8.69□□□□□ -1.02
TOPBP1-201ENST00000260810 DMRT2Q9Y5R5 561 aa8.69□□□□□ -1.02
TOPBP1-201ENST00000260810 ATP1B4Q9UN42 357 aaPredicted RBP8.68□□□□□ -1.02
TOPBP1-201ENST00000260810 SCAF11Q99590 1463 aaKnown RBP8.68□□□□□ -1.02
TOPBP1-201ENST00000260810 ITSN1Q15811 1721 aa8.68□□□□□ -1.02
TOPBP1-201ENST00000260810 A0A0C4DFX4 3053 aa8.67□□□□□ -1.02
TOPBP1-201ENST00000260810 TNRC18O15417 2968 aaPredicted RBP8.67□□□□□ -1.02
TOPBP1-201ENST00000260810 LRPPRCP42704 1394 aaKnown RBP8.67□□□□□ -1.02
TOPBP1-201ENST00000260810 CCDC7Q96M83 1385 aa8.67□□□□□ -1.02
TOPBP1-201ENST00000260810 CFAP70Q5T0N1 1121 aa8.67□□□□□ -1.02
TOPBP1-201ENST00000260810 SBNO2Q9Y2G9 1366 aa8.66□□□□□ -1.02
TOPBP1-201ENST00000260810 N4BP2Q86UW6 1770 aaPredicted RBP8.66□□□□□ -1.02
TOPBP1-201ENST00000260810 YTHDC2Q9H6S0 1430 aaKnown RBP8.66□□□□□ -1.02
TOPBP1-201ENST00000260810 SPENQ96T58 3664 aaKnown RBP8.66□□□□□ -1.02
TOPBP1-201ENST00000260810 AMER1Q5JTC6 1135 aaPredicted RBP8.65□□□□□ -1.02
TOPBP1-201ENST00000260810 MST1RQ04912 1400 aa8.65□□□□□ -1.02
TOPBP1-201ENST00000260810 KIF3BO15066 747 aa8.65□□□□□ -1.03
TOPBP1-201ENST00000260810 FBLN1P23142 703 aa8.65□□□□□ -1.03
TOPBP1-201ENST00000260810 NCAPD2Q15021 1401 aa8.64□□□□□ -1.03
TOPBP1-201ENST00000260810 PARD3Q8TEW0 1356 aa8.64□□□□□ -1.03
TOPBP1-201ENST00000260810 CHD7Q9P2D1 2997 aa8.64□□□□□ -1.03
TOPBP1-201ENST00000260810 HSPA5P11021 654 aaKnown RBP8.63□□□□□ -1.03
TOPBP1-201ENST00000260810 TMEM2Q9UHN6 1383 aa8.63□□□□□ -1.03
TOPBP1-201ENST00000260810 ZNF646O15015 1829 aaPredicted RBP8.63□□□□□ -1.03
TOPBP1-201ENST00000260810 C5P01031 1676 aa8.63□□□□□ -1.03
TOPBP1-201ENST00000260810 UBR2Q8IWV8 1755 aa8.63□□□□□ -1.03
TOPBP1-201ENST00000260810 C14orf93Q9H972 538 aaKnown RBP8.62□□□□□ -1.03
TOPBP1-201ENST00000260810 SBF2Q86WG5 1849 aa8.62□□□□□ -1.03
TOPBP1-201ENST00000260810 PAPPAQ13219 1627 aa8.62□□□□□ -1.03
TOPBP1-201ENST00000260810 PXDNQ92626 1479 aa8.62□□□□□ -1.03
TOPBP1-201ENST00000260810 COL22A1Q8NFW1 1626 aaPredicted RBP8.61□□□□□ -1.03
TOPBP1-201ENST00000260810 TMEM132EQ6IEE7 984 aa8.61□□□□□ -1.03
TOPBP1-201ENST00000260810 USP47Q96K76 1375 aa8.61□□□□□ -1.03
TOPBP1-201ENST00000260810 SMG6Q86US8 1419 aaKnown RBP8.61□□□□□ -1.03
TOPBP1-201ENST00000260810 LAMA1P25391 3075 aa8.61□□□□□ -1.03
TOPBP1-201ENST00000260810 SPINK5Q9NQ38 1064 aaPredicted RBP8.6□□□□□ -1.03
TOPBP1-201ENST00000260810 ST20-MTHFSA0A0A6YYL1 179 aa8.6□□□□□ -1.03
TOPBP1-201ENST00000260810 ZNF521Q96K83 1311 aa8.6□□□□□ -1.03
TOPBP1-201ENST00000260810 PHLPP1O60346 1717 aa8.59□□□□□ -1.03
TOPBP1-201ENST00000260810 NUTM2DQ5VT03 806 aaPredicted RBP8.59□□□□□ -1.03
TOPBP1-201ENST00000260810 ZFHX4Q86UP3 3567 aa8.59□□□□□ -1.03
TOPBP1-201ENST00000260810 RSPH4AQ5TD94 716 aa8.59□□□□□ -1.03
TOPBP1-201ENST00000260810 KDM3BQ7LBC6 1761 aa8.58□□□□□ -1.04
TOPBP1-201ENST00000260810 SLIT2O94813 1529 aa8.58□□□□□ -1.04
TOPBP1-201ENST00000260810 PKD1L3Q7Z443 1732 aa8.58□□□□□ -1.04
TOPBP1-201ENST00000260810 SLC4A1APQ9BWU0 796 aaKnown RBP8.58□□□□□ -1.04
TOPBP1-201ENST00000260810 OVOS2A0A0J9YW53 1432 aa8.57□□□□□ -1.04
TOPBP1-201ENST00000260810 OVOS2Q6IE36 1432 aa8.57□□□□□ -1.04
TOPBP1-201ENST00000260810 BRWD3Q6RI45 1802 aa8.57□□□□□ -1.04
TOPBP1-201ENST00000260810 SLIT3O75094 1523 aa8.57□□□□□ -1.04
TOPBP1-201ENST00000260810 PTCH1Q13635 1447 aa8.56□□□□□ -1.04
TOPBP1-201ENST00000260810 PNPLA6Q8IY17 1366 aa8.56□□□□□ -1.04
TOPBP1-201ENST00000260810 ITGB4P16144 1822 aa8.56□□□□□ -1.04
TOPBP1-201ENST00000260810 ZRANB1Q9UGI0 708 aa8.56□□□□□ -1.04
TOPBP1-201ENST00000260810 PHF23Q9BUL5 403 aaPredicted RBP8.55□□□□□ -1.04
TOPBP1-201ENST00000260810 RIMS2Q9UQ26 1411 aa8.55□□□□□ -1.04
TOPBP1-201ENST00000260810 SCN11AQ9UI33 1791 aa8.55□□□□□ -1.04
TOPBP1-201ENST00000260810 MYH14Q7Z406 1995 aaKnown RBP8.54□□□□□ -1.04
TOPBP1-201ENST00000260810 RBM33Q96EV2 1170 aaKnown RBP8.54□□□□□ -1.04
TOPBP1-201ENST00000260810 ROBO1Q9Y6N7 1651 aa8.54□□□□□ -1.04
TOPBP1-201ENST00000260810 WDR87Q6ZQQ6 2873 aa8.54□□□□□ -1.04
TOPBP1-201ENST00000260810 A0A1B0GUL6 1792 aa8.53□□□□□ -1.04
TOPBP1-201ENST00000260810 NEUROD1Q13562 356 aa8.53□□□□□ -1.04
TOPBP1-201ENST00000260810 PLEKHG1Q9ULL1 1385 aa8.53□□□□□ -1.04
TOPBP1-201ENST00000260810 A0A1W2PP64 1363 aa8.53□□□□□ -1.04
TOPBP1-201ENST00000260810 WAPLQ7Z5K2 1190 aa8.53□□□□□ -1.04
TOPBP1-201ENST00000260810 ABCC11Q96J66 1382 aa8.53□□□□□ -1.04
TOPBP1-201ENST00000260810 LOC400499M0QZD8 3231 aa8.52□□□□□ -1.05
TOPBP1-201ENST00000260810 PLCH1Q4KWH8 1693 aa8.52□□□□□ -1.05
TOPBP1-201ENST00000260810 AHDC1Q5TGY3 1603 aaPredicted RBP8.51□□□□□ -1.05
TOPBP1-201ENST00000260810 BLMP54132 1417 aaPredicted RBP8.51□□□□□ -1.05
TOPBP1-201ENST00000260810 CHD9Q3L8U1 2897 aa8.51□□□□□ -1.05
TOPBP1-201ENST00000260810 GGT6Q6P531 493 aa8.5□□□□□ -1.05
TOPBP1-201ENST00000260810 DCAF11Q8TEB1 546 aa8.5□□□□□ -1.05
TOPBP1-201ENST00000260810 RREB1Q92766 1687 aa8.5□□□□□ -1.05
TOPBP1-201ENST00000260810 POLR3AO14802 1390 aaPredicted RBP8.49□□□□□ -1.05
TOPBP1-201ENST00000260810 PARP4Q9UKK3 1724 aaKnown RBP8.49□□□□□ -1.05
TOPBP1-201ENST00000260810 FAM135BQ49AJ0 1406 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms