RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 SRPK2P78362 688 aaKnown RBP23.3■■□□□ 1.32
VRK1-201ENST00000216639 ANKRD36BQ8N2N9 1353 aa23.3■■□□□ 1.32
VRK1-201ENST00000216639 USP32Q8NFA0 1604 aa23.3■■□□□ 1.32
VRK1-201ENST00000216639 ABCC11Q96J66 1382 aa23.3■■□□□ 1.32
VRK1-201ENST00000216639 SMG6Q86US8 1419 aaKnown RBP23.29■■□□□ 1.32
VRK1-201ENST00000216639 NRXN3Q9Y4C0 1643 aa23.29■■□□□ 1.32
VRK1-201ENST00000216639 CABP2Q9NPB3 220 aa23.29■■□□□ 1.32
VRK1-201ENST00000216639 C3P01024 1663 aa23.29■■□□□ 1.32
VRK1-201ENST00000216639 MINK1Q8N4C8 1332 aaPredicted RBP23.28■■□□□ 1.32
VRK1-201ENST00000216639 BLMP54132 1417 aaPredicted RBP23.27■■□□□ 1.32
VRK1-201ENST00000216639 WDR43Q15061 677 aaKnown RBP eCLIP23.27■■□□□ 1.32
VRK1-201ENST00000216639 CGNL1Q0VF96 1302 aa23.26■■□□□ 1.31
VRK1-201ENST00000216639 BCANQ96GW7 911 aa23.26■■□□□ 1.31
VRK1-201ENST00000216639 CEBPAP49715 358 aaPredicted RBP23.25■■□□□ 1.31
VRK1-201ENST00000216639 NUDCQ9Y266 331 aa23.25■■□□□ 1.31
VRK1-201ENST00000216639 NSD2O96028 1365 aa23.24■■□□□ 1.31
VRK1-201ENST00000216639 MORC1Q86VD1 984 aa23.23■■□□□ 1.31
VRK1-201ENST00000216639 PELP1Q8IZL8 1130 aaKnown RBP23.22■■□□□ 1.31
VRK1-201ENST00000216639 PDE3BQ13370 1112 aa23.22■■□□□ 1.31
VRK1-201ENST00000216639 SIRT1Q96EB6 747 aa23.22■■□□□ 1.31
VRK1-201ENST00000216639 TERF2IPQ9NYB0 399 aa23.22■■□□□ 1.31
VRK1-201ENST00000216639 METP08581 1390 aa23.21■■□□□ 1.31
VRK1-201ENST00000216639 KNDC1Q76NI1 1749 aa23.21■■□□□ 1.31
VRK1-201ENST00000216639 CDK19Q9BWU1 502 aa23.21■■□□□ 1.31
VRK1-201ENST00000216639 EID1Q9Y6B2 187 aa23.21■■□□□ 1.31
VRK1-201ENST00000216639 PLEKHG1Q9ULL1 1385 aa23.21■■□□□ 1.31
VRK1-201ENST00000216639 ADAMTS8Q9UP79 889 aa23.19■■□□□ 1.3
VRK1-201ENST00000216639 TECPR2O15040 1411 aa23.19■■□□□ 1.3
VRK1-201ENST00000216639 FAM135BQ49AJ0 1406 aa23.19■■□□□ 1.3
VRK1-201ENST00000216639 WAPLQ7Z5K2 1190 aa23.18■■□□□ 1.3
VRK1-201ENST00000216639 A0A1W2PP64 1363 aa23.17■■□□□ 1.3
VRK1-201ENST00000216639 TXNDC2Q86VQ3 553 aa23.17■■□□□ 1.3
VRK1-201ENST00000216639 SLIT1O75093 1534 aa23.17■■□□□ 1.3
VRK1-201ENST00000216639 POLR3AO14802 1390 aaPredicted RBP23.17■■□□□ 1.3
VRK1-201ENST00000216639 ERICH6BQ5W0A0 696 aa23.16■■□□□ 1.3
VRK1-201ENST00000216639 HDGFL2Q7Z4V5 671 aaPredicted RBP23.16■■□□□ 1.3
VRK1-201ENST00000216639 PLPPR3Q6T4P5 718 aa23.16■■□□□ 1.3
VRK1-201ENST00000216639 THEMISQ8N1K5 641 aaPredicted RBP23.16■■□□□ 1.3
VRK1-201ENST00000216639 CPS1P31327 1500 aa23.16■■□□□ 1.3
VRK1-201ENST00000216639 PLEKHH1Q9ULM0 1364 aa23.15■■□□□ 1.3
VRK1-201ENST00000216639 ARHGAP23Q9P227 1491 aa23.15■■□□□ 1.3
VRK1-201ENST00000216639 ADAMTS13Q76LX8 1427 aa23.15■■□□□ 1.3
VRK1-201ENST00000216639 SENP3-EIF4A1A0A087X0R7 540 aa23.14■■□□□ 1.3
VRK1-201ENST00000216639 LTKP29376 864 aa23.13■■□□□ 1.29
VRK1-201ENST00000216639 SALL2Q9Y467 1007 aaPredicted RBP23.12■■□□□ 1.29
VRK1-201ENST00000216639 WASLO00401 505 aaPredicted RBP23.11■■□□□ 1.29
VRK1-201ENST00000216639 CD163L1Q9NR16 1453 aa23.1■■□□□ 1.29
VRK1-201ENST00000216639 CFAP53Q96M91 514 aa23.1■■□□□ 1.29
VRK1-201ENST00000216639 ATP7BP35670 1465 aa23.1■■□□□ 1.29
VRK1-201ENST00000216639 CABP1Q9NZU7 370 aa23.09■■□□□ 1.29
VRK1-201ENST00000216639 MED14O60244 1454 aa23.08■■□□□ 1.29
VRK1-201ENST00000216639 TNNT2P45379 298 aaPredicted RBP23.08■■□□□ 1.29
VRK1-201ENST00000216639 RIMS1Q86UR5 1692 aaKnown RBP23.07■■□□□ 1.28
VRK1-201ENST00000216639 DIP2AQ14689 1571 aa23.05■■□□□ 1.28
VRK1-201ENST00000216639 TBX22Q9Y458 520 aa23.05■■□□□ 1.28
VRK1-201ENST00000216639 ANKRD26Q9UPS8 1709 aa23.05■■□□□ 1.28
VRK1-201ENST00000216639 IRX6P78412 446 aaPredicted RBP23.05■■□□□ 1.28
VRK1-201ENST00000216639 NGEFQ8N5V2 710 aa23.05■■□□□ 1.28
VRK1-201ENST00000216639 MTHFSP49914 203 aa23.04■■□□□ 1.28
VRK1-201ENST00000216639 CEP170BQ9Y4F5 1589 aaPredicted RBP23.04■■□□□ 1.28
VRK1-201ENST00000216639 ROBO2Q9HCK4 1378 aa23.04■■□□□ 1.28
VRK1-201ENST00000216639 RNF123Q5XPI4 1314 aa23.03■■□□□ 1.28
VRK1-201ENST00000216639 SLC26A8Q96RN1 970 aa23.02■■□□□ 1.28
VRK1-201ENST00000216639 PPIP5K1Q6PFW1 1433 aa23.02■■□□□ 1.28
VRK1-201ENST00000216639 FYB1O15117 783 aa23.02■■□□□ 1.28
VRK1-201ENST00000216639 GGNBP2Q9H3C7 697 aa23.02■■□□□ 1.28
VRK1-201ENST00000216639 ADGRB2O60241 1585 aa23.01■■□□□ 1.27
VRK1-201ENST00000216639 ADAMTSL3P82987 1691 aa23.01■■□□□ 1.27
VRK1-201ENST00000216639 KIF20BQ96Q89 1820 aa23■■□□□ 1.27
VRK1-201ENST00000216639 NUDT16Q96DE0 195 aaKnown RBP23■■□□□ 1.27
VRK1-201ENST00000216639 CCDC61Q9Y6R9 512 aa23■■□□□ 1.27
VRK1-201ENST00000216639 SHPRHQ149N8 1683 aa22.99■■□□□ 1.27
VRK1-201ENST00000216639 CCDC146Q8IYE0 955 aa22.99■■□□□ 1.27
VRK1-201ENST00000216639 CPSF1Q10570 1443 aaKnown RBP22.98■■□□□ 1.27
VRK1-201ENST00000216639 CDCA7LQ96GN5 454 aa22.98■■□□□ 1.27
VRK1-201ENST00000216639 PPP4R2Q9NY27 417 aa22.98■■□□□ 1.27
VRK1-201ENST00000216639 RCAN3Q9UKA8 241 aa22.97■■□□□ 1.27
VRK1-201ENST00000216639 EDC4Q6P2E9 1401 aaKnown RBP22.97■■□□□ 1.27
VRK1-201ENST00000216639 PTPRUQ92729 1446 aa22.97■■□□□ 1.27
VRK1-201ENST00000216639 AMOTL2Q9Y2J4 779 aa22.96■■□□□ 1.27
VRK1-201ENST00000216639 CDC42BPGQ6DT37 1551 aa22.96■■□□□ 1.27
VRK1-201ENST00000216639 PTCH1Q13635 1447 aa22.96■■□□□ 1.27
VRK1-201ENST00000216639 APAF1O14727 1248 aa22.96■■□□□ 1.27
VRK1-201ENST00000216639 ZNF521Q96K83 1311 aa22.95■■□□□ 1.26
VRK1-201ENST00000216639 GOLGA2Q08379 1002 aa22.95■■□□□ 1.26
VRK1-201ENST00000216639 ZNF142P52746 1687 aaPredicted RBP22.94■■□□□ 1.26
VRK1-201ENST00000216639 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.94■■□□□ 1.26
VRK1-201ENST00000216639 RUNDC1Q96C34 613 aa22.94■■□□□ 1.26
VRK1-201ENST00000216639 ZNF692Q9BU19 519 aaPredicted RBP22.94■■□□□ 1.26
VRK1-201ENST00000216639 PIK3R4Q99570 1358 aa22.93■■□□□ 1.26
VRK1-201ENST00000216639 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.93■■□□□ 1.263e-6■□□□□ 9.4
VRK1-201ENST00000216639 ITSN1Q15811 1721 aa22.91■■□□□ 1.26
VRK1-201ENST00000216639 ANKLE2Q86XL3 938 aa22.91■■□□□ 1.26
VRK1-201ENST00000216639 MON2Q7Z3U7 1717 aa22.9■■□□□ 1.26
VRK1-201ENST00000216639 RRP1P56182 461 aaKnown RBP22.89■■□□□ 1.26
VRK1-201ENST00000216639 AKAP12Q02952 1782 aa22.89■■□□□ 1.25
VRK1-201ENST00000216639 PRR36Q9H6K5 1346 aa22.89■■□□□ 1.25
VRK1-201ENST00000216639 XRN1Q8IZH2 1706 aaKnown RBP22.88■■□□□ 1.25
VRK1-201ENST00000216639 SETD1BQ9UPS6 1966 aaKnown RBP22.87■■□□□ 1.25
VRK1-201ENST00000216639 U2AF1L5P0DN76 240 aaPredicted RBP22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms