RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 4933402E13RikQ9D4D2 429 aa13.58□□□□□ -0.24
Msh3-201ENSMUST00000022220 Rbm25B2RY56 838 aaKnown RBP13.58□□□□□ -0.24
Msh3-201ENSMUST00000022220 Ccdc146E9Q9F7 977 aa13.58□□□□□ -0.24
Msh3-201ENSMUST00000022220 Znf608Q56A10 1511 aa13.57□□□□□ -0.24
Msh3-201ENSMUST00000022220 Phf14Q9D4H9 881 aa13.57□□□□□ -0.24
Msh3-201ENSMUST00000022220 Zfp777B9EKF4 885 aa13.57□□□□□ -0.24
Msh3-201ENSMUST00000022220 Map7O88735 730 aa13.57□□□□□ -0.24
Msh3-201ENSMUST00000022220 Slc52a2Q9D8F3 450 aa13.57□□□□□ -0.24
Msh3-201ENSMUST00000022220 Bcl2l13P59017 434 aa13.56□□□□□ -0.24
Msh3-201ENSMUST00000022220 Q8BT18 775 aa13.56□□□□□ -0.24
Msh3-201ENSMUST00000022220 Larp1bA0A0A6YXJ7 370 aaKnown RBP13.56□□□□□ -0.24
Msh3-201ENSMUST00000022220 Cabp2Q9JLK4 216 aa13.56□□□□□ -0.24
Msh3-201ENSMUST00000022220 Erich6bQ9D4S6 220 aa13.55□□□□□ -0.24
Msh3-201ENSMUST00000022220 Mug2P28666 1451 aa13.55□□□□□ -0.24
Msh3-201ENSMUST00000022220 Swt1Q9DBQ9 907 aa13.54□□□□□ -0.24
Msh3-201ENSMUST00000022220 Peg3Q3URU2 1571 aa13.54□□□□□ -0.24
Msh3-201ENSMUST00000022220 PalmQ9Z0P4 383 aa13.54□□□□□ -0.24
Msh3-201ENSMUST00000022220 PtmaP26350 111 aa13.54□□□□□ -0.24
Msh3-201ENSMUST00000022220 Trim58Q5NCC9 485 aa13.54□□□□□ -0.24
Msh3-201ENSMUST00000022220 TatQ8QZR1 454 aa13.53□□□□□ -0.24
Msh3-201ENSMUST00000022220 Ubap1lG3UW59 384 aa13.53□□□□□ -0.24
Msh3-201ENSMUST00000022220 Arhgef11Q68FM7 1552 aa13.53□□□□□ -0.24
Msh3-201ENSMUST00000022220 KarsQ99MN1 595 aaKnown RBP13.53□□□□□ -0.24
Msh3-201ENSMUST00000022220 Cdk13Q69ZA1 1511 aaKnown RBP13.53□□□□□ -0.24
Msh3-201ENSMUST00000022220 Chmp4bQ9D8B3 224 aaKnown RBP13.53□□□□□ -0.24
Msh3-201ENSMUST00000022220 Triml2E9PW10 424 aa13.52□□□□□ -0.24
Msh3-201ENSMUST00000022220 Kdm6bQ5NCY0 1641 aa13.52□□□□□ -0.24
Msh3-201ENSMUST00000022220 KnstrnQ9D9Z1 312 aaKnown RBP13.52□□□□□ -0.25
Msh3-201ENSMUST00000022220 Ptch1Q61115 1434 aa13.52□□□□□ -0.25
Msh3-201ENSMUST00000022220 Tnpo1Q8BFY9 898 aaKnown RBP13.51□□□□□ -0.25
Msh3-201ENSMUST00000022220 Ggnbp2Q5SV77 696 aa13.51□□□□□ -0.25
Msh3-201ENSMUST00000022220 Tspyl2Q7TQI8 677 aa13.51□□□□□ -0.25
Msh3-201ENSMUST00000022220 Mcm10Q0VBD2 885 aa13.5□□□□□ -0.25
Msh3-201ENSMUST00000022220 Kcnn1Q9EQR3 537 aa13.5□□□□□ -0.25
Msh3-201ENSMUST00000022220 Cavin4A2AMM0 362 aa13.5□□□□□ -0.25
Msh3-201ENSMUST00000022220 HnrnpuQ8VEK3 800 aaKnown RBP13.5□□□□□ -0.25
Msh3-201ENSMUST00000022220 Ddrgk1Q80WW9 315 aa13.5□□□□□ -0.25
Msh3-201ENSMUST00000022220 Abca16E9PWJ7 1678 aa13.49□□□□□ -0.25
Msh3-201ENSMUST00000022220 Q3UJC8 639 aa13.49□□□□□ -0.25
Msh3-201ENSMUST00000022220 Slc4a10Q5DTL9 1118 aa13.49□□□□□ -0.25
Msh3-201ENSMUST00000022220 Ric3Q8BPM6 367 aa13.49□□□□□ -0.25
Msh3-201ENSMUST00000022220 AlkP97793 1621 aa13.49□□□□□ -0.25
Msh3-201ENSMUST00000022220 Tnnt2P50752 301 aa13.48□□□□□ -0.25
Msh3-201ENSMUST00000022220 Gm10471E9Q1C7 252 aa13.48□□□□□ -0.25
Msh3-201ENSMUST00000022220 Slc12a5Q91V14 1138 aa13.48□□□□□ -0.25
Msh3-201ENSMUST00000022220 Ppp1r9bQ6R891 817 aaKnown RBP13.48□□□□□ -0.25
Msh3-201ENSMUST00000022220 Bcl11bQ99PV8 884 aa13.48□□□□□ -0.25
Msh3-201ENSMUST00000022220 Rbm10Q99KG3 930 aaKnown RBP13.47□□□□□ -0.25
Msh3-201ENSMUST00000022220 Plekhh1Q80TI1 1356 aa13.47□□□□□ -0.25
Msh3-201ENSMUST00000022220 HdgfP51859 237 aaKnown RBP13.47□□□□□ -0.25
Msh3-201ENSMUST00000022220 Eif4g3Q80XI3 1579 aaKnown RBP13.47□□□□□ -0.25
Msh3-201ENSMUST00000022220 Abcc2Q8VI47 1543 aa13.47□□□□□ -0.25
Msh3-201ENSMUST00000022220 Gm10563F6WIE4 79 aa13.46□□□□□ -0.25
Msh3-201ENSMUST00000022220 Atf3Q60765 181 aa13.46□□□□□ -0.25
Msh3-201ENSMUST00000022220 Dennd6aQ8BH65 605 aa13.46□□□□□ -0.25
Msh3-201ENSMUST00000022220 Smc5Q8CG46 1101 aaKnown RBP13.46□□□□□ -0.25
Msh3-201ENSMUST00000022220 Gnai1B2RSH2 354 aa13.46□□□□□ -0.25
Msh3-201ENSMUST00000022220 Gnai3Q9DC51 354 aa13.46□□□□□ -0.25
Msh3-201ENSMUST00000022220 Kif20aP97329 887 aa13.45□□□□□ -0.26
Msh3-201ENSMUST00000022220 Rabep1O35551 862 aa13.45□□□□□ -0.26
Msh3-201ENSMUST00000022220 VgfQ0VGU4 617 aa13.45□□□□□ -0.26
Msh3-201ENSMUST00000022220 Clstn1Q9EPL2 979 aa13.45□□□□□ -0.26
Msh3-201ENSMUST00000022220 GnpatP98192 678 aa13.45□□□□□ -0.26
Msh3-201ENSMUST00000022220 Rfx1P48377 963 aa13.44□□□□□ -0.26
Msh3-201ENSMUST00000022220 Zranb3Q6NZP1 1069 aa13.44□□□□□ -0.26
Msh3-201ENSMUST00000022220 Lrrc9Q8CDN9 1456 aa13.44□□□□□ -0.26
Msh3-201ENSMUST00000022220 PtprgQ05909 1442 aa13.44□□□□□ -0.26
Msh3-201ENSMUST00000022220 Brpf1B2RRD7 1212 aa13.44□□□□□ -0.26
Msh3-201ENSMUST00000022220 Ssh1Q76I79 1042 aa13.44□□□□□ -0.26
Msh3-201ENSMUST00000022220 RalgapbQ8BQZ4 1484 aa13.43□□□□□ -0.26
Msh3-201ENSMUST00000022220 Sptbn5F6UCX4 1208 aa13.43□□□□□ -0.26
Msh3-201ENSMUST00000022220 Aplp1Q03157 653 aa13.43□□□□□ -0.26
Msh3-201ENSMUST00000022220 Chmp3Q9CQ10 224 aa13.43□□□□□ -0.26
Msh3-201ENSMUST00000022220 GphnQ8BUV3 769 aaKnown RBP13.42□□□□□ -0.26
Msh3-201ENSMUST00000022220 Chmp4cQ9D7F7 232 aa13.42□□□□□ -0.26
Msh3-201ENSMUST00000022220 AatkQ80YE4 1365 aa13.42□□□□□ -0.26
Msh3-201ENSMUST00000022220 Fkbp4P30416 458 aa13.41□□□□□ -0.26
Msh3-201ENSMUST00000022220 Mcm4P49717 862 aa13.41□□□□□ -0.26
Msh3-201ENSMUST00000022220 Chmp7Q8R1T1 451 aa13.41□□□□□ -0.26
Msh3-201ENSMUST00000022220 Znf518aB2RRF6 1478 aaKnown RBP13.41□□□□□ -0.26
Msh3-201ENSMUST00000022220 Adgrl2Q8JZZ7 1487 aa13.41□□□□□ -0.26
Msh3-201ENSMUST00000022220 TmpoQ61033 693 aaKnown RBP13.41□□□□□ -0.26
Msh3-201ENSMUST00000022220 DroshaQ5HZJ0 1373 aaKnown RBP13.4□□□□□ -0.26
Msh3-201ENSMUST00000022220 NinlQ6ZQ12 1394 aa13.4□□□□□ -0.26
Msh3-201ENSMUST00000022220 Dennd4bQ3U1Y4 1499 aa13.4□□□□□ -0.26
Msh3-201ENSMUST00000022220 Gas2l2Q5SSG4 860 aa13.4□□□□□ -0.26
Msh3-201ENSMUST00000022220 Ccne1Q61457 408 aa13.4□□□□□ -0.26
Msh3-201ENSMUST00000022220 Sv2bQ8BG39 683 aa13.4□□□□□ -0.26
Msh3-201ENSMUST00000022220 Cfdp1O88271 295 aaKnown RBP13.39□□□□□ -0.27
Msh3-201ENSMUST00000022220 Eif4g2Q62448 906 aaKnown RBP13.39□□□□□ -0.27
Msh3-201ENSMUST00000022220 SphkapQ6NSW3 1687 aa13.39□□□□□ -0.27
Msh3-201ENSMUST00000022220 Naip6Q9JIB6 1403 aa13.39□□□□□ -0.27
Msh3-201ENSMUST00000022220 Stk11ipQ3TAA7 1072 aa13.39□□□□□ -0.27
Msh3-201ENSMUST00000022220 Rassf8Q8CJ96 419 aa13.39□□□□□ -0.27
Msh3-201ENSMUST00000022220 Gcc2Q8CHG3 1679 aa13.39□□□□□ -0.27
Msh3-201ENSMUST00000022220 PtprtQ99M80 1454 aa13.39□□□□□ -0.27
Msh3-201ENSMUST00000022220 Abcc6Q9R1S7 1498 aa13.39□□□□□ -0.27
Msh3-201ENSMUST00000022220 Ddx54Q8K4L0 874 aaKnown RBP13.38□□□□□ -0.27
Msh3-201ENSMUST00000022220 Tmem94Q7TSH8 1360 aa13.38□□□□□ -0.27
Msh3-201ENSMUST00000022220 Edc4Q3UJB9 1406 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 22,080 RNA–protein pairs in 27.2 ms