RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W TOR2P32600 2474 aaKnown RBP-0.34□□□□□ -2.46
PRP42YDR235W YPR117WQ06116 2489 aa-0.34□□□□□ -2.46
PRP42YDR235W EDC1P53080 175 aaPredicted RBP-0.34□□□□□ -2.46
PRP42YDR235W APC1P53886 1748 aa-0.34□□□□□ -2.46
PRP42YDR235W SMC4Q12267 1418 aa-0.34□□□□□ -2.46
PRP42YDR235W YBR032WP38223 100 aa-0.35□□□□□ -2.46
PRP42YDR235W YKL018C-AQ3E7A7 99 aa-0.35□□□□□ -2.46
PRP42YDR235W SUS1Q6WNK7 96 aa-0.35□□□□□ -2.46
PRP42YDR235W YOR032W-AQ8TGS1 66 aa-0.35□□□□□ -2.46
PRP42YDR235W GEA2P39993 1459 aaKnown RBP-0.35□□□□□ -2.46
PRP42YDR235W FMP27Q06179 2628 aa-0.35□□□□□ -2.46
PRP42YDR235W MEC1P38111 2368 aa-0.35□□□□□ -2.47
PRP42YDR235W YHR050W-AQ05451 56 aa-0.35□□□□□ -2.47
PRP42YDR235W YOR105WQ08504 108 aa-0.35□□□□□ -2.47
PRP42YDR235W RPO21P04050 1733 aaKnown RBP-0.35□□□□□ -2.47
PRP42YDR235W YLR146W-AQ2V2P1 62 aa-0.36□□□□□ -2.47
PRP42YDR235W YCL001W-BQ96VH2 84 aa-0.36□□□□□ -2.47
PRP42YDR235W TY3B-GQ99315 1547 aa-0.37□□□□□ -2.47
PRP42YDR235W KOG1P38873 1557 aa-0.37□□□□□ -2.47
PRP42YDR235W TOS6P48560 102 aa-0.37□□□□□ -2.47
PRP42YDR235W YGL194C-AQ2V2P6 80 aa-0.37□□□□□ -2.47
PRP42YDR235W YMR175W-AQ3E766 64 aa-0.37□□□□□ -2.47
PRP42YDR235W YOL097W-AQ3E7Y9 61 aa-0.37□□□□□ -2.47
PRP42YDR235W YCR075W-AQ3E830 75 aa-0.37□□□□□ -2.47
PRP42YDR235W HAP1P0CE41 1502 aa-0.37□□□□□ -2.47
PRP42YDR235W CWP2P43497 92 aa-0.38□□□□□ -2.47
PRP42YDR235W OLI1P61829 76 aa-0.38□□□□□ -2.47
PRP42YDR235W YMR082CQ04276 118 aa-0.38□□□□□ -2.47
PRP42YDR235W POC4Q12245 148 aaPredicted RBP-0.38□□□□□ -2.47
PRP42YDR235W YOR343CQ12484 108 aa-0.38□□□□□ -2.47
PRP42YDR235W YOR314WQ12506 109 aa-0.38□□□□□ -2.47
PRP42YDR235W YOR008C-AQ3E7B9 74 aa-0.38□□□□□ -2.47
PRP42YDR235W YLL006W-AQ3E814 58 aa-0.38□□□□□ -2.47
PRP42YDR235W YOR394C-AQ8TGJ0 55 aa-0.38□□□□□ -2.47
PRP42YDR235W FKS3Q04952 1785 aa-0.38□□□□□ -2.47
PRP42YDR235W MDS3P53094 1487 aa-0.38□□□□□ -2.47
PRP42YDR235W TEL1P38110 2787 aa-0.38□□□□□ -2.47
PRP42YDR235W ESC1Q03661 1658 aaKnown RBP-0.38□□□□□ -2.47
PRP42YDR235W YBL039W-BP0C268 59 aa-0.38□□□□□ -2.47
PRP42YDR235W ZEO1Q08245 113 aa-0.38□□□□□ -2.47
PRP42YDR235W YBR200W-AQ3E755 54 aa-0.38□□□□□ -2.47
PRP42YDR235W YGR121W-AQ3E816 71 aa-0.38□□□□□ -2.47
PRP42YDR235W YSP2Q06681 1438 aa-0.39□□□□□ -2.47
PRP42YDR235W TIM12P32830 109 aa-0.39□□□□□ -2.47
PRP42YDR235W RPS27BP38711 82 aa-0.39□□□□□ -2.47
PRP42YDR235W ATP17Q06405 101 aa-0.39□□□□□ -2.47
PRP42YDR235W TRA1P38811 3744 aa-0.39□□□□□ -2.47
PRP42YDR235W MLP1Q02455 1875 aaKnown RBP-0.39□□□□□ -2.47
PRP42YDR235W QCR9P22289 66 aa-0.4□□□□□ -2.47
PRP42YDR235W MMS22Q06164 1454 aa-0.4□□□□□ -2.47
PRP42YDR235W YPL225WQ08971 146 aaKnown RBP-0.4□□□□□ -2.47
PRP42YDR235W YGR035W-AQ45U48 73 aa-0.4□□□□□ -2.47
PRP42YDR235W GCN1P33892 2672 aaKnown RBP-0.42□□□□□ -2.48
PRP42YDR235W SSS1P35179 80 aa-0.42□□□□□ -2.48
PRP42YDR235W LSM2P38203 95 aaKnown RBP-0.42□□□□□ -2.48
PRP42YDR235W ARO1P08566 1588 aaKnown RBP-0.42□□□□□ -2.48
PRP42YDR235W YGL258W-AQ3E740 77 aa-0.42□□□□□ -2.48
PRP42YDR235W YOR011W-AQ3E807 68 aa-0.42□□□□□ -2.48
PRP42YDR235W DNF2Q12675 1612 aa-0.42□□□□□ -2.48
PRP42YDR235W RRP5Q05022 1729 aaKnown RBP-0.43□□□□□ -2.48
PRP42YDR235W SWM2P40342 146 aa-0.43□□□□□ -2.48
PRP42YDR235W YKL065W-AQ2V2P2 73 aa-0.43□□□□□ -2.48
PRP42YDR235W YKL068W-AQ3E826 78 aa-0.43□□□□□ -2.48
PRP42YDR235W LTE1P07866 1435 aa-0.44□□□□□ -2.48
PRP42YDR235W PAU7P39545 55 aa-0.44□□□□□ -2.48
PRP42YDR235W ERI1P62651 68 aaKnown RBP-0.44□□□□□ -2.48
PRP42YDR235W YGR146C-AQ8TGT9 53 aa-0.44□□□□□ -2.48
PRP42YDR235W FIG2P25653 1609 aa-0.44□□□□□ -2.48
PRP42YDR235W YDR119W-AQ2V2P9 66 aa-0.45□□□□□ -2.48
PRP42YDR235W VPS15P22219 1454 aa-0.45□□□□□ -2.48
PRP42YDR235W IQG1Q12280 1495 aa-0.45□□□□□ -2.48
PRP42YDR235W RPS30AP0CX33 63 aaKnown RBP-0.46□□□□□ -2.48
PRP42YDR235W RPS30BP0CX34 63 aaKnown RBP-0.46□□□□□ -2.48
PRP42YDR235W PDR15Q04182 1529 aaKnown RBP-0.46□□□□□ -2.48
PRP42YDR235W DOP1Q03921 1698 aa-0.46□□□□□ -2.48
PRP42YDR235W YOR072W-BQ3E832 53 aa-0.46□□□□□ -2.48
PRP42YDR235W HUB1Q6Q546 73 aa-0.46□□□□□ -2.48
PRP42YDR235W YLR157W-DP0CE99 70 aa-0.47□□□□□ -2.48
PRP42YDR235W YDR524C-BQ3E6R4 66 aa-0.47□□□□□ -2.48
PRP42YDR235W ESP1Q03018 1630 aa-0.47□□□□□ -2.49
PRP42YDR235W UFD4P33202 1483 aa-0.47□□□□□ -2.49
PRP42YDR235W RPO31P04051 1460 aa-0.48□□□□□ -2.49
PRP42YDR235W DNF1P32660 1571 aa-0.48□□□□□ -2.49
PRP42YDR235W IML1P47170 1584 aa-0.48□□□□□ -2.49
PRP42YDR235W CSF1Q12150 2958 aa-0.49□□□□□ -2.49
PRP42YDR235W SNQ2P32568 1501 aaKnown RBP-0.49□□□□□ -2.49
PRP42YDR235W PDR12Q02785 1511 aa-0.49□□□□□ -2.49
PRP42YDR235W SPI1P40092 148 aa-0.49□□□□□ -2.49
PRP42YDR235W YOL131WQ08270 108 aa-0.49□□□□□ -2.49
PRP42YDR235W COA2Q3E823 68 aa-0.49□□□□□ -2.49
PRP42YDR235W VMR1P38735 1592 aa-0.5□□□□□ -2.49
PRP42YDR235W TY1B-DR4Q07793 1604 aa-0.5□□□□□ -2.49
PRP42YDR235W THO2P53552 1597 aaKnown RBP-0.51□□□□□ -2.49
PRP42YDR235W YBR230W-AQ3E762 66 aa-0.51□□□□□ -2.49
PRP42YDR235W YOR093CQ12275 1648 aa-0.51□□□□□ -2.49
PRP42YDR235W NUP159P40477 1460 aa-0.52□□□□□ -2.49
PRP42YDR235W SCC2Q04002 1493 aa-0.52□□□□□ -2.49
PRP42YDR235W YSY6P38374 65 aa-0.52□□□□□ -2.49
PRP42YDR235W YOL166W-AQ8TGJ1 51 aa-0.52□□□□□ -2.49
PRP42YDR235W YHR213W-AQ8TGT4 77 aa-0.52□□□□□ -2.49
Retrieved 100 of 5,963 RNA–protein pairs in 26.2 ms