RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 NEDD8Q15843 81 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CA9Q16790 459 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 LRRC24Q50LG9 513 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ZC2HC1CQ53FD0 456 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 PRPF38BQ5VTL8 546 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ALS2CLQ60I27 953 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 TMPRSS9Q7Z410 1059 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SELENOHQ8IZQ5 122 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SPAG16Q8N0X2 631 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 PCDHGC5Q9Y5F6 944 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 M0R3H8 397 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CRTAMO95727 393 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ATP6V1C1P21283 382 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 MSH2P43246 934 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ACTR1AP61163 376 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 OXLD1Q5BKU9 147 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 BEX5Q5H9J7 111 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 UNC13DQ70J99 1090 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 PAGE2Q7Z2X7 111 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 UBE3BQ7Z3V4 1068 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 RHOT2Q8IXI1 618 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 BPIFCQ8NFQ6 507 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 INTS10Q9NVR2 710 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SUCOQ9UBS9 1254 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 TRBV23OR9-2A0A075B6M9 112 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SYN3O14994 580 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CDC40O60508 579 aaKnown RBP eCLIP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SBK2P0C263 348 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 FAM228BP0C875 321 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 HSPD1P10809 573 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PSMA3P25788 255 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ACTR3P61158 418 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PIN1Q13526 163 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 IKBKEQ14164 716 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SNX17Q15036 470 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SF3B4Q15427 424 aaKnown RBP eCLIP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 WDR93Q6P2C0 686 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MARVELD2Q8N4S9 558 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NATD1Q8N6N6 113 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 FANK1Q8TC84 345 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 GIMAP1Q8WWP7 306 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 METTL2AQ96IZ6 378 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PPANQ9NQ55 473 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PDP2Q9P2J9 529 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TBC1D29Q9UFV1 150 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CHORDC1Q9UHD1 332 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ADGRE2Q9UHX3 823 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SLC12A8A0AV02 714 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 DENND3A2RUS2 1198 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM88BA6NKF7 163 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PFDN6O15212 129 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CD86P42081 329 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 HADHBP55084 474 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ABRQ12979 859 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PDIA5Q14554 519 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MYLK3Q32MK0 819 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PDCD4Q53EL6 469 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SULT6B1Q6IMI4 303 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TMC4Q7Z404 712 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 POLNQ7Z5Q5 900 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MB21D1Q8N884 522 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 C8orf76Q96K31 380 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PIP5K1AQ99755 562 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PITHD1Q9GZP4 211 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NOD2Q9HC29 1040 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 GPR108Q9NPR9 543 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 STK32BQ9NY57 414 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 RABGEF1Q9UJ41 708 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 COPG1Q9Y678 874 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 DLGAP3O95886 979 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 QDPRP09417 244 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 VCLP18206 1134 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 RAB4AP20338 218 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ABCG1P45844 678 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CACNA2D1P54289 1103 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 INTS6LQ5JSJ4 861 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 BNIPLQ7Z465 357 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 NLRP13Q86W25 1043 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MICU2Q8IYU8 434 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 IQUBQ8NA54 791 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 GRAMD1AQ96CP6 724 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 ZFYVE1Q9HBF4 777 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CNTN3Q9P232 1028 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 UPB1Q9UBR1 384 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CIDEBQ9UHD4 219 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 CFL2Q9Y281 166 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 HEATR5AQ86XA9 2040 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PPEF2O14830 753 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SHOXO15266 292 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 BBOX1O75936 387 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 MLYCDO95822 493 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 FABP1P07148 127 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 USP17L8P0C7I0 530 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 GNG11P61952 73 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 EEF1A1P68104 462 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 EEF1A2Q05639 463 aaKnown RBP3.69□□□□□ -1.82
SCN1A-221ENST00000641996 SURF1Q15526 300 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM259Q4ZIN3 620 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 PDZK1Q5T2W1 519 aa3.69□□□□□ -1.82
SCN1A-221ENST00000641996 EEF1A1P5Q5VTE0 462 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms