RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 KIAA1257Q9ULG3 409 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 PRR12Q9ULL5 1215 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CNTNAP4Q9C0A0 1308 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SLC12A8A0AV02 714 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 TBX3O15119 743 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 PFDN1O60925 122 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 GSTM1P09488 218 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 ARID5BQ14865 1188 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 VN1R5Q7Z5H4 357 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF677Q86XU0 584 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CLEC4FQ8N1N0 589 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF579Q8NAF0 562 aaKnown RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 MTMR4Q9NYA4 1195 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SNX8Q9Y5X2 465 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SPATA31A5Q5VU36 1347 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SPATA31A7Q8IWB4 1347 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 AFDNP55196 1824 aaKnown RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 C16orf96A6NNT2 1141 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CBX4O00257 560 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 TM9SF1O15321 606 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SLC2A4P14672 509 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 COPZ1P61923 177 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 MFSD10Q14728 455 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 METTL3Q86U44 580 aaKnown RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 LRRC8AQ8IWT6 810 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 FBXO16Q8IX29 292 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 RASGEF1AQ8N9B8 481 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 MTA3Q9BTC8 594 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 ZFP69BQ9UJL9 534 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 TULP4Q9NRJ4 1543 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 B2RBV5 119 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 NDUFB10O96000 172 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 OR56A5P0C7T3 313 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 EPHB2P29323 1055 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 FDFT1P37268 417 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 FKBP1BP68106 108 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 RCN1Q15293 331 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 INSCQ1MX18 579 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 ATAT1Q5SQI0 421 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 C11orf57Q6ZUT1 292 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CYP4X1Q8N118 509 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SLC44A5Q8NCS7 719 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 NEDD1Q8NHV4 660 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 PANX2Q96RD6 677 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 NYAP2Q9P242 653 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 XPO7Q9UIA9 1087 aaKnown RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 MRTO4Q9UKD2 239 aaKnown RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 PNMA8BQ9ULN7 279 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF510Q9Y2H8 683 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SIK3Q9Y2K2 1263 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 DNTTP04053 509 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 CXCR2P25025 360 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 CDH8P55286 799 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 CCDC144BQ3MJ40 725 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 GPR158Q5T848 1215 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 PPP2R2DQ66LE6 453 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 KCTD16Q68DU8 428 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 GRAMD4Q6IC98 578 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 PLD3Q8IV08 490 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 PEX5LQ8IYB4 626 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 LRRC71Q8N4P6 559 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 ADNPQ9H2P0 1102 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 RGS18Q9NS28 235 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF112Q9UJU3 913 aa6.34□□□□□ -1.4
SCN1A-217ENST00000637988 CASTOR2A6NHX0 329 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 MYO1CO00159 1063 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 IFNA16P05015 189 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 STIP1P31948 543 aaKnown RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 DYNC1I2Q13409 638 aaKnown RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 NCF4Q15080 339 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 OVOS1Q6IE37 1185 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CCT7Q99832 543 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 PAK5Q9P286 719 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ADAMTS1Q9UHI8 967 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 PSME2Q9UL46 239 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SLC27A6Q9Y2P4 619 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 AKR1B1P15121 316 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 PDIA5Q14554 519 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 MAP1SQ66K74 1059 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 DSELQ8IZU8 1212 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 RSPH1Q8WYR4 309 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ZDHHC4Q9NPG8 344 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SF3B1O75533 1304 aaKnown RBP eCLIP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ZNF536O15090 1300 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 KPNA3O00505 521 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 RASGRP1O95267 797 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 NDUFA10O95299 355 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 MLYCDO95822 493 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 ECDO95905 644 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 PABPC1P11940 636 aaKnown RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 KELP23276 732 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 U2AF2P26368 475 aaKnown RBP eCLIP6.33□□□□□ -1.41e-6■■■□□ 14.9
SCN1A-217ENST00000637988 CDC25AP30304 524 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 IFNGR2P38484 337 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 CCR4P51679 360 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 DHX34Q14147 1143 aaKnown RBP6.33□□□□□ -1.4
SCN1A-217ENST00000637988 INAQ16352 499 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 SBK1Q52WX2 424 aa6.33□□□□□ -1.4
SCN1A-217ENST00000637988 AHI1Q8N157 1196 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms