RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PGFP49763 221 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 DLG4P78352 724 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 NCOA4Q13772 614 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 PKP1Q13835 747 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 CRY1Q16526 586 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 USP39Q53GS9 565 aaKnown RBP17.15■□□□□ 0.34
CLN3-246ENST00000636228 LY6G5CQ5SRR4 150 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 ACOT1Q86TX2 421 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 FRMD1Q8N878 549 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 NAT16Q8N8M0 369 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 TXNDC5Q8NBS9 432 aaKnown RBP17.15■□□□□ 0.34
CLN3-246ENST00000636228 PARD3BQ8TEW8 1205 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 RLN3Q8WXF3 142 aa17.15■□□□□ 0.34
CLN3-246ENST00000636228 DDX1Q92499 740 aaKnown RBP17.15■□□□□ 0.34
CLN3-246ENST00000636228 ZFRQ96KR1 1074 aaKnown RBP17.15■□□□□ 0.34
CLN3-246ENST00000636228 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.15■□□□□ 0.346e-9■■■■■ 134.6
CLN3-246ENST00000636228 ZNF638Q14966 1978 aaKnown RBP17.15■□□□□ 0.34
CLN3-246ENST00000636228 PATE3B3GLJ2 98 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 SGK1O00141 431 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 SLC9A3R1O14745 358 aaPredicted RBP17.14■□□□□ 0.33
CLN3-246ENST00000636228 TNFRSF10BO14763 440 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 RTN3O95197 1032 aaPredicted RBP17.14■□□□□ 0.33
CLN3-246ENST00000636228 ADH5P11766 374 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 SLC5A3P53794 718 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 MRPS21P82921 87 aaKnown RBP17.14■□□□□ 0.33
CLN3-246ENST00000636228 ZNF667Q5HYK9 610 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 HECTD3Q5T447 861 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 PMS2CLQ68D20 193 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 RASSF3Q86WH2 238 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 CEP57L1Q8IYX8 460 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 IL17RCQ8NAC3 791 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 CCDC26Q8TAB7 109 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 PAGE5Q96GU1 130 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 EDEM2Q9BV94 578 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 ARHGEF4Q9NR80 690 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 GMIPQ9P107 970 aa17.14■□□□□ 0.33
CLN3-246ENST00000636228 CGNQ9P2M7 1197 aaKnown RBP17.14■□□□□ 0.33
CLN3-246ENST00000636228 C4orf47A7E2U8 309 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 AP1G2O75843 785 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 BEST1O76090 585 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 KCNK5O95279 499 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 APODP05090 189 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 IRF1P10914 325 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 CHRM1P11229 460 aaPredicted RBP17.13■□□□□ 0.33
CLN3-246ENST00000636228 CCDC130P13994 396 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 DNM1Q05193 864 aaKnown RBP17.13■□□□□ 0.33
CLN3-246ENST00000636228 ST3GAL2Q16842 350 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 KMT5BQ4FZB7 885 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 FUKQ8N0W3 1084 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 KIAA0895Q8NCT3 520 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 ZMIZ2Q8NF64 920 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 SNX21Q969T3 373 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 CNOT6LQ96LI5 555 aaKnown RBP17.13■□□□□ 0.33
CLN3-246ENST00000636228 SMOQ99835 787 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 LSM14BQ9BX40 385 aaKnown RBP17.13■□□□□ 0.33
CLN3-246ENST00000636228 VRTNQ9H8Y1 702 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 DMAP1Q9NPF5 467 aaPredicted RBP17.13■□□□□ 0.33
CLN3-246ENST00000636228 DMAC2Q9NW81 257 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 HMGXB4Q9UGU5 601 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 SH3BP1Q9Y3L3 701 aa17.13■□□□□ 0.33
CLN3-246ENST00000636228 E2F8A0AVK6 867 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 GIPC1O14908 333 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 TRIM24O15164 1050 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 ACTN4O43707 911 aaKnown RBP17.12■□□□□ 0.33
CLN3-246ENST00000636228 ADH1CP00326 375 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 SLFN14P0C7P3 912 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 PMLP29590 882 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 GRIA2P42262 883 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 KIR2DL1P43626 348 aaPredicted RBP17.12■□□□□ 0.33
CLN3-246ENST00000636228 DHPSP49366 369 aaPredicted RBP17.12■□□□□ 0.33
CLN3-246ENST00000636228 CLDN10P78369 228 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 SPOPLQ6IQ16 392 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 ARMCX6Q7L4S7 300 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 DDX42Q86XP3 938 aaKnown RBP eCLIP17.12■□□□□ 0.33
CLN3-246ENST00000636228 BBS7Q8IWZ6 715 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 PHTF2Q8N3S3 785 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 C12orf29Q8N999 325 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 PDZD8Q8NEN9 1154 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 SLC2A14Q8TDB8 520 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 TNIP3Q96KP6 325 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 KCTD10Q9H3F6 313 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 KRT82Q9NSB4 513 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 FAM49BQ9NUQ9 324 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 EXOC1Q9NV70 894 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 TBC1D14Q9P2M4 693 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 ATP8B3O60423 1300 aa17.12■□□□□ 0.33
CLN3-246ENST00000636228 ANAPC1Q9H1A4 1944 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 LNP1A1A4G5 178 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 ADAM23O75077 832 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 TBX18O95935 607 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 HSP90AA1P07900 732 aaKnown RBP17.11■□□□□ 0.33
CLN3-246ENST00000636228 NDST1P52848 882 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 MAP3K7CLP57077 242 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 GAD2Q05329 585 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 PSAPL1Q6NUJ1 521 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 CYP2U1Q7Z449 544 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 TMEM25Q86YD3 366 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 TMEFF1Q8IYR6 380 aa17.11■□□□□ 0.33
CLN3-246ENST00000636228 PGBD3Q8N328 593 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms