RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 DAB2IPQ5VWQ8 1189 aa25.27■■□□□ 1.64
CPSF1-214ENST00000622776 C12orf40Q86WS4 652 aa25.27■■□□□ 1.64
CPSF1-214ENST00000622776 C12orf56Q8IXR9 622 aa25.27■■□□□ 1.64
CPSF1-214ENST00000622776 IL17RCQ8NAC3 791 aa25.27■■□□□ 1.64
CPSF1-214ENST00000622776 TXNDC5Q8NBS9 432 aaKnown RBP25.27■■□□□ 1.64
CPSF1-214ENST00000622776 PDZD8Q8NEN9 1154 aa25.27■■□□□ 1.64
CPSF1-214ENST00000622776 OVCA2Q8WZ82 227 aa25.27■■□□□ 1.64
CPSF1-214ENST00000622776 FBXO32Q969P5 355 aa25.27■■□□□ 1.64
CPSF1-214ENST00000622776 CACNA1GO43497 2377 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 IGF2RP11717 2491 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 A0A0A0MRY4 1105 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 E2F8A0AVK6 867 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 SGK1O00141 431 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 PHACTR2O75167 634 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 YEATS4O95619 227 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 ADH5P11766 374 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 TIE1P35590 1138 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 PI4KAP42356 2102 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 DHPSP49366 369 aaPredicted RBP25.26■■□□□ 1.63
CPSF1-214ENST00000622776 NOVA1P51513 510 aaKnown RBP25.26■■□□□ 1.63
CPSF1-214ENST00000622776 EMC10Q5UCC4 262 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 ARHGEF4Q9NR80 690 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 CGNQ9P2M7 1197 aaKnown RBP25.26■■□□□ 1.63
CPSF1-214ENST00000622776 CFAP47Q6ZTR5 3102 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 CACNA1EQ15878 2313 aa25.26■■□□□ 1.63
CPSF1-214ENST00000622776 PATE3B3GLJ2 98 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 COCHO43405 550 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 CASP1P29466 404 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 GRIA2P42262 883 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 KIR2DL1P43626 348 aaPredicted RBP25.25■■□□□ 1.63
CPSF1-214ENST00000622776 BMT2Q1RMZ1 405 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 LY6G5CQ5SRR4 150 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 RLN3Q8WXF3 142 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 ZFRQ96KR1 1074 aaKnown RBP25.25■■□□□ 1.63
CPSF1-214ENST00000622776 KCNK16Q96T55 309 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 BLZF1Q9H2G9 400 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 SMYD3Q9H7B4 428 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 VRTNQ9H8Y1 702 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 MAGEF1Q9HAY2 307 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 SLC39A2Q9NP94 309 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 TMEM9BQ9NQ34 198 aa25.25■■□□□ 1.63
CPSF1-214ENST00000622776 CHORDC1Q9UHD1 332 aaPredicted RBP25.25■■□□□ 1.63
CPSF1-214ENST00000622776 ATP8B3O60423 1300 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 PALM2-AKAP2B1ALY0 433 aaPredicted RBP25.24■■□□□ 1.63
CPSF1-214ENST00000622776 K7ELQ4 463 aaPredicted RBP25.24■■□□□ 1.63
CPSF1-214ENST00000622776 GIPC1O14908 333 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 POLR2DO15514 142 aaKnown RBP25.24■■□□□ 1.63
CPSF1-214ENST00000622776 EXOC3O60645 756 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 P2RY2P41231 377 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 TNFRSF4P43489 277 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 CASP4P49662 377 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 CDH8P55286 799 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 KDSRQ06136 332 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 EOGTQ5NDL2 527 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 HECTD3Q5T447 861 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 FAM35AQ86V20 835 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 SCAMP5Q8TAC9 235 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 PLEKHO2Q8TD55 490 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 WHAMMQ8TF30 809 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 PIGKQ92643 395 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 OTUB2Q96DC9 234 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 MED10Q9BTT4 135 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 POLMQ9NP87 494 aaPredicted RBP25.24■■□□□ 1.63
CPSF1-214ENST00000622776 IL37Q9NZH6 218 aa25.24■■□□□ 1.63
CPSF1-214ENST00000622776 FRYQ5TBA9 3013 aa25.23■■□□□ 1.63
CPSF1-214ENST00000622776 IRX4P78413 519 aa25.23■■□□□ 1.63
CPSF1-214ENST00000622776 GAD2Q05329 585 aa25.23■■□□□ 1.63
CPSF1-214ENST00000622776 BIRC3Q13489 604 aa25.23■■□□□ 1.63
CPSF1-214ENST00000622776 KNOP1Q1ED39 458 aaKnown RBP25.23■■□□□ 1.63
CPSF1-214ENST00000622776 ZNF699Q32M78 642 aa25.23■■□□□ 1.63
CPSF1-214ENST00000622776 SNX30Q5VWJ9 437 aa25.23■■□□□ 1.63
CPSF1-214ENST00000622776 PAQR9Q6ZVX9 377 aa25.23■■□□□ 1.63
CPSF1-214ENST00000622776 ZDHHC4Q9NPG8 344 aa25.23■■□□□ 1.63
CPSF1-214ENST00000622776 CIZ1Q9ULV3 898 aaPredicted RBP25.23■■□□□ 1.63
CPSF1-214ENST00000622776 PVALEFA0A1B0GWK0 134 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 CDX4O14627 284 aaPredicted RBP25.22■■□□□ 1.63
CPSF1-214ENST00000622776 TNFRSF10BO14763 440 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 ADAM23O75077 832 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 SLC5A3P53794 718 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 ZNF667Q5HYK9 610 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 SH3PXD2AQ5TCZ1 1133 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 LPCAT2Q7L5N7 544 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 PHTF2Q8N3S3 785 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 TNIP3Q96KP6 325 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 SPACA7Q96KW9 195 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 CCSER2Q9H7U1 834 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 DMAP1Q9NPF5 467 aaPredicted RBP25.22■■□□□ 1.63
CPSF1-214ENST00000622776 BCCIPQ9P287 314 aaKnown RBP eCLIP25.22■■□□□ 1.63
CPSF1-214ENST00000622776 SH3BP1Q9Y3L3 701 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 FAM208BQ5VWN6 2430 aa25.22■■□□□ 1.63
CPSF1-214ENST00000622776 PCNX2A6NKB5 2137 aa25.21■■□□□ 1.63
CPSF1-214ENST00000622776 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.21■■□□□ 1.63
CPSF1-214ENST00000622776 MAP3K13O43283 966 aa25.21■■□□□ 1.63
CPSF1-214ENST00000622776 CLSTN1O94985 981 aa25.21■■□□□ 1.63
CPSF1-214ENST00000622776 TUBP50607 506 aa25.21■■□□□ 1.63
CPSF1-214ENST00000622776 AP3M2P53677 418 aa25.21■■□□□ 1.63
CPSF1-214ENST00000622776 SCARA5Q6ZMJ2 495 aa25.21■■□□□ 1.63
CPSF1-214ENST00000622776 ETFBKMTQ8IXQ9 262 aa25.21■■□□□ 1.63
CPSF1-214ENST00000622776 FRMD1Q8N878 549 aa25.21■■□□□ 1.63
CPSF1-214ENST00000622776 PARD3BQ8TEW8 1205 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms