RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 STX1BP61266 288 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 SNAPC2Q13487 334 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 VGLL4Q14135 290 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 RCN1Q15293 331 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 HSDL1Q3SXM5 330 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 ALLCQ8N6M5 410 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 SERPINI1Q99574 410 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 TMEM120AQ9BXJ8 343 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 CYP3A43Q9HB55 503 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 XAB2Q9HCS7 855 aaKnown RBP13.33□□□□□ -0.28
MSH6-215ENST00000622629 SNTG2Q9NY99 539 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 EPS15L1Q9UBC2 864 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 TJP1Q07157 1748 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 GLI3P10071 1580 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 hCG_1818297A0A087WSY0 165 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 SIGLEC16A6NMB1 481 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 APOC4-APOC2K7ER74 178 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 NVLO15381 856 aaKnown RBP13.33□□□□□ -0.28
MSH6-215ENST00000622629 DNAJC8O75937 253 aaPredicted RBP13.33□□□□□ -0.28
MSH6-215ENST00000622629 APOC2P02655 101 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 OCRLQ01968 901 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 DPYSL3Q14195 570 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 FASTKD3Q14CZ7 662 aaKnown RBP13.33□□□□□ -0.28
MSH6-215ENST00000622629 PDK2Q15119 407 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 NOTUMQ6P988 496 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 ACAD11Q709F0 780 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 TLCD1Q96CP7 247 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 DDX27Q96GQ7 796 aaKnown RBP13.33□□□□□ -0.28
MSH6-215ENST00000622629 LRGUKQ96M69 825 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 TSC22D3Q99576 134 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 EPAS1Q99814 870 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 FRMD8P1Q9BZ68 369 aaPredicted RBP13.33□□□□□ -0.28
MSH6-215ENST00000622629 ARMCX1Q9P291 453 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 KIAA1257Q9ULG3 409 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 ATRNL1Q5VV63 1379 aa13.33□□□□□ -0.28
MSH6-215ENST00000622629 POLBP06746 335 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 NCAM1P13591 858 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 ATXN3P54252 364 aaPredicted RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 PDK1Q15118 436 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 ZNF484Q5JVG2 852 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 ITPRIPL1Q6GPH6 555 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 CCDC117Q8IWD4 279 aaPredicted RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 ABI1Q8IZP0 508 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 C2orf69Q8N8R5 385 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 ZBTB10Q96DT7 871 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 APOBEC3GQ9HC16 384 aaKnown RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 SETD4Q9NVD3 440 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 C4AP0C0L4 1744 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 C4BP0C0L5 1744 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 HMGCRP04035 888 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 GNAT1P11488 350 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 CYP2F1P24903 491 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 SLC26A2P50443 739 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 AQP5P55064 265 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 EFHC1Q5JVL4 640 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 ZC3H3Q8IXZ2 948 aaKnown RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 ACO2Q99798 780 aaKnown RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 FRMD8Q9BZ67 464 aaPredicted RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 CDT1Q9H211 546 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 NFASCO94856 1347 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 MARF1Q9Y4F3 1742 aaKnown RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 SIPA1L3O60292 1781 aaPredicted RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 IRF6O14896 467 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 EGFRP00533 1210 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 CD4P01730 458 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 SERPINB3P29508 390 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 CASP2P42575 452 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 SERPINB4P48594 390 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 KPNA2P52292 529 aaKnown RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 PTPN20Q4JDL3 420 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 TRIM67Q6ZTA4 783 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 GSDMBQ8TAX9 411 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 AGAP11Q8TF27 550 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 SPOCK2Q92563 424 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 BORCS6Q96GS4 357 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 LRRC4CQ9HCJ2 640 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 COQ4Q9Y3A0 265 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 AKAP5P24588 427 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 PMLP29590 882 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 KLC1Q07866 573 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 LRRC38Q5VT99 294 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 PLEKHA7Q6IQ23 1121 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 MON1BQ7L1V2 547 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.32□□□□□ -0.282e-7■■■■□ 25.1
MSH6-215ENST00000622629 ARMCX6Q7L4S7 300 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 FAM96AQ9H5X1 160 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 C20orf96Q9NUD7 363 aaPredicted RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 DDIT4Q9NX09 232 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 CPSF3Q9UKF6 684 aaKnown RBP13.32□□□□□ -0.28
MSH6-215ENST00000622629 ADGRA3Q8IWK6 1321 aa13.32□□□□□ -0.28
MSH6-215ENST00000622629 MAFO75444 373 aaPredicted RBP13.31□□□□□ -0.28
MSH6-215ENST00000622629 ACO1P21399 889 aaKnown RBP13.31□□□□□ -0.28
MSH6-215ENST00000622629 CDC25CP30307 473 aa13.31□□□□□ -0.28
MSH6-215ENST00000622629 EPHX2P34913 555 aa13.31□□□□□ -0.28
MSH6-215ENST00000622629 HADHBP55084 474 aaKnown RBP13.31□□□□□ -0.28
MSH6-215ENST00000622629 SLC12A1Q13621 1099 aa13.31□□□□□ -0.28
MSH6-215ENST00000622629 USP10Q14694 798 aaKnown RBP13.31□□□□□ -0.28
MSH6-215ENST00000622629 DGKDQ16760 1214 aa13.31□□□□□ -0.28
MSH6-215ENST00000622629 UNC45BQ8IWX7 931 aa13.31□□□□□ -0.28
MSH6-215ENST00000622629 TRIM56Q9BRZ2 755 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms