RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, human

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLIP1-219	ENST00000620786	GRID1	Q9ULK0	1009 aa		11.78	□□□□□ -0.52
CLIP1-219	ENST00000620786	COL5A2	P05997	1499 aa	Predicted RBP	11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	FAM205A	Q6ZU69	1335 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	TRIM16	O95361	564 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	DDR1	Q08345	913 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	CDC16	Q13042	620 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	RARS2	Q5T160	578 aa	Known RBP	11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	ANO5	Q75V66	913 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	TMCO5A	Q8N6Q1	288 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	SMARCD1	Q96GM5	515 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	FOXP3	Q9BZS1	431 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	RIOX1	Q9H6W3	641 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	MAP10	Q9P2G4	905 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	LNPEP	Q9UIQ6	1025 aa		11.77	□□□□□ -0.52
CLIP1-219	ENST00000620786	CDH16	O75309	829 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	KCNJ1	P48048	391 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	DAB2	P98082	770 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	AGAP9	Q5VTM2	703 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	CHADL	Q6NUI6	762 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	ELOA2	Q8IYF1	753 aa	Predicted RBP	11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	KCNV2	Q8TDN2	545 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	SGF29	Q96ES7	293 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	ZNF518B	Q9C0D4	1074 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	RBM12	Q9NTZ6	932 aa	Known RBP	11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	RERE	Q9P2R6	1566 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	NDUFB5	O43674	189 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	MSC	O60682	206 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	PCNA	P12004	261 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	PTPRA	P18433	802 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	POLE2	P56282	527 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	GEMIN4	P57678	1058 aa	Known RBP	11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	PTPN11	Q06124	597 aa	Predicted RBP	11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	CNTN1	Q12860	1018 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	C16orf89	Q6UX73	402 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	ZNF720	Q7Z2F6	126 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	IL1RL2	Q9HB29	575 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	PNMA8B	Q9ULN7	279 aa	Predicted RBP	11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	FAM47E-STBD1	D6RA91	191 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	RAD51C	O43502	376 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	RTN3	O95197	1032 aa	Predicted RBP	11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	CHN1	P15882	459 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	CCR1	P32246	355 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	IFNE	Q86WN2	208 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	PCYOX1L	Q8NBM8	494 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	SKA1	Q96BD8	255 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	CELF4	Q9BZC1	486 aa	Known RBP	11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	NDEL1	Q9GZM8	345 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	SYTL2	Q9HCH5	934 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	DDX4	Q9NQI0	724 aa	Known RBP	11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	FBXO10	Q9UK96	956 aa		11.77	□□□□□ -0.53
CLIP1-219	ENST00000620786	IFRD1	O00458	451 aa	Predicted RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	SEC24D	O94855	1032 aa	Predicted RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	YWHAQ	P27348	245 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	CHI3L1	P36222	383 aa	Predicted RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	PGM1	P36871	562 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	SCNN1B	P51168	640 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	RENBP	P51606	427 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	LPCAT1	Q8NF37	534 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	WNK4	Q96J92	1243 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	ADAM2	Q99965	735 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	RANBP17	Q9H2T7	1088 aa	Known RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	IARS2	Q9NSE4	1012 aa	Known RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	GPRC5D	Q9NZD1	345 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	USP18	Q9UMW8	372 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	EIF3L	Q9Y262	564 aa	Known RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	KIDINS220	Q9ULH0	1771 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	MSH3	P20585	1137 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	STIP1	P31948	543 aa	Known RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	CENPP	Q6IPU0	288 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	SPG21	Q9NZD8	308 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	BCL9	O00512	1426 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	PFDN1	O60925	122 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	GYPC	P04921	128 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	LGALS2	P05162	132 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	CDH2	P19022	906 aa	Predicted RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	NCKAP1L	P55160	1127 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	RGMB	Q6NW40	437 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	LRIG3	Q6UXM1	1119 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	PHF21A	Q96BD5	680 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	IRX2	Q9BZI1	471 aa	Predicted RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	ADNP	Q9H2P0	1102 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	MRPL17	Q9NRX2	175 aa	Known RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	STOML1	Q9UBI4	398 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	BARX2	Q9UMQ3	279 aa	Predicted RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	EVPLL	A8MZ36	301 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	PLSCR1	O15162	318 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	AKAP10	O43572	662 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	CCDC85B	Q15834	202 aa	Predicted RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	CACHD1	Q5VU97	1274 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	CES5A	Q6NT32	575 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	TNIP2	Q8NFZ5	429 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	TPCN2	Q8NHX9	752 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	ZSWIM1	Q9BR11	485 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	UBE2O	Q9C0C9	1292 aa	Known RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	RPS6KL1	Q9Y6S9	549 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	TRIM66	O15016	1216 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	ZW10	O43264	779 aa		11.76	□□□□□ -0.53
CLIP1-219	ENST00000620786	NDST1	P52848	882 aa		11.76	□□□□□ -0.53

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