RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 PARVAQ9NVD7 372 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 DOLKQ9UPQ8 538 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 EXOC7Q9UPT5 735 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 TMA7Q9Y2S6 64 aaKnown RBP13.7□□□□□ -0.22
MSH6-214ENST00000616033 MAST2Q6P0Q8 1798 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 GRAP2O75791 330 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 TM7SF2O76062 418 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 APRTP07741 180 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 CCR3P51677 355 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 NLRP11P59045 1033 aaKnown RBP13.7□□□□□ -0.22
MSH6-214ENST00000616033 NOMO3P69849 1222 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 GK3PQ14409 553 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 MAP7D1Q3KQU3 841 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 ZBTB33Q86T24 672 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 NME8Q8N427 588 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 ZNF276Q8N554 614 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 APOPT1Q96IL0 206 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 IL1RAPL1Q9NZN1 696 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 IP6K2Q9UHH9 426 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 CCPG1Q9ULG6 757 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 NR2E3Q9Y5X4 410 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 ATAD5Q96QE3 1844 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 NRAPQ86VF7 1730 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 MYO18AQ92614 2054 aaKnown RBP13.7□□□□□ -0.22
MSH6-214ENST00000616033 TM9SF1O15321 606 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 VCLP18206 1134 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 PDK3Q15120 406 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 NANOGNBQ7Z5D8 188 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 LDHDQ86WU2 507 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 TMEM130Q8N3G9 435 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 SPATA18Q8TC71 538 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 MOCOSQ96EN8 888 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 FAM192AQ9GZU8 254 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 LIN28AQ9H9Z2 209 aaKnown RBP13.7□□□□□ -0.22
MSH6-214ENST00000616033 NXF1Q9UBU9 619 aaKnown RBP13.7□□□□□ -0.22
MSH6-214ENST00000616033 TELO2Q9Y4R8 837 aa13.7□□□□□ -0.22
MSH6-214ENST00000616033 CSDE1O75534 798 aaKnown RBP13.69□□□□□ -0.22
MSH6-214ENST00000616033 EN1Q05925 392 aaPredicted RBP13.69□□□□□ -0.22
MSH6-214ENST00000616033 MTMR1Q13613 665 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 TRMT5Q32P41 509 aaKnown RBP13.69□□□□□ -0.22
MSH6-214ENST00000616033 EFHC1Q5JVL4 640 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 TDRPQ86YL5 185 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 HACE1Q8IYU2 909 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 RAB3IL1Q8TBN0 382 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 VTI1AQ96AJ9 217 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 PRPF18Q99633 342 aaKnown RBP13.69□□□□□ -0.22
MSH6-214ENST00000616033 SIKE1Q9BRV8 207 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 GLIS2Q9BZE0 524 aaPredicted RBP13.69□□□□□ -0.22
MSH6-214ENST00000616033 WWP1Q9H0M0 922 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 ATXN10Q9UBB4 475 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 DNAJC16Q9Y2G8 782 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 hCG_1818297A0A087WSY0 165 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 LRRIQ4A6NIV6 560 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 A8MXQ7 604 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 WDR64B1ANS9 1081 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 ACTR3P61158 418 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 R3HDM1Q15032 1099 aaKnown RBP13.69□□□□□ -0.22
MSH6-214ENST00000616033 NFIL3Q16649 462 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 TDRD10Q5VZ19 366 aaKnown RBP13.69□□□□□ -0.22
MSH6-214ENST00000616033 CES4AQ5XG92 561 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 SLC39A4Q6P5W5 647 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 UTS2BQ765I0 119 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 ANKRD23Q86SG2 305 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 DHDDSQ86SQ9 333 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 SAPCD2Q86UD0 394 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 UNC5BQ8IZJ1 945 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 GPD1LQ8N335 351 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 ICA1LQ8NDH6 482 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 MIPOL1Q8TD10 442 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 ZNF606Q8WXB4 792 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 PGBD4Q96DM1 585 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.69□□□□□ -0.22
MSH6-214ENST00000616033 ANLNQ9NQW6 1124 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 XPNPEP1Q9NQW7 623 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 FAM198AQ9UFP1 575 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 ZNF536O15090 1300 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 UBE4BO95155 1302 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 PTPRJQ12913 1337 aa13.69□□□□□ -0.22
MSH6-214ENST00000616033 PMLP29590 882 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 CRADDP78560 199 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 TTLL12Q14166 644 aaPredicted RBP13.68□□□□□ -0.22
MSH6-214ENST00000616033 PSMD6Q15008 389 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 MTERF2Q49AM1 385 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 PTAR1Q7Z6K3 402 aaPredicted RBP13.68□□□□□ -0.22
MSH6-214ENST00000616033 USP37Q86T82 979 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 CDR2LQ86X02 465 aaPredicted RBP13.68□□□□□ -0.22
MSH6-214ENST00000616033 RBM12BQ8IXT5 1001 aaKnown RBP13.68□□□□□ -0.22
MSH6-214ENST00000616033 ABRAQ8N0Z2 381 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 TRIM11Q96F44 468 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 NR1H4Q96RI1 486 aaPredicted RBP13.68□□□□□ -0.22
MSH6-214ENST00000616033 IWS1Q96ST2 819 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 MXRA8Q9BRK3 442 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 APOBEC3GQ9HC16 384 aaKnown RBP13.68□□□□□ -0.22
MSH6-214ENST00000616033 PCDH9Q9HC56 1237 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 COL20A1Q9P218 1284 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 SEPT9Q9UHD8 586 aaPredicted RBP13.68□□□□□ -0.22
MSH6-214ENST00000616033 SHOC2Q9UQ13 582 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 GOLGA8QA0A0J9YX86 632 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 GOLGA8OA6NCC3 632 aa13.68□□□□□ -0.22
MSH6-214ENST00000616033 GOLGA8NF8WBI6 632 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms