RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 ZNF211Q13398 564 aaPredicted RBP18.86■□□□□ 0.61
VRK3-225ENST00000601912 PSMD5Q16401 504 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 PRSS55Q6UWB4 352 aaPredicted RBP18.86■□□□□ 0.61
VRK3-225ENST00000601912 DDX53Q86TM3 631 aaKnown RBP18.86■□□□□ 0.61
VRK3-225ENST00000601912 HERC6Q8IVU3 1022 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 SCN4BQ8IWT1 228 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 SPPL2BQ8TCT7 592 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 PGLYRP2Q96PD5 576 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 RAD9AQ99638 391 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 VN1R3Q9BXE9 311 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.86■□□□□ 0.61
VRK3-225ENST00000601912 MTRRQ9UBK8 725 aa18.86■□□□□ 0.61
VRK3-225ENST00000601912 LRCH4O75427 683 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 ZBED1O96006 694 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 KRT7P08729 469 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 PCK1P35558 622 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 GLUD2P49448 558 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 RABGGTBP53611 331 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 DAOAP59103 153 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 CCDC14Q49A88 953 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 ODF2Q5BJF6 829 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 ZFYVE27Q5T4F4 411 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 GPRIN1Q7Z2K8 1008 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 KATNAL2Q8IYT4 538 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 SCML4Q8N228 414 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 SPATA4Q8NEY3 305 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 FBXO22Q8NEZ5 403 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 CFAP57Q96MR6 1250 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 HERC2P3Q9BVR0 1158 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 EHD2Q9NZN4 543 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 CDY1Q9Y6F8 540 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 ZRANB2O95218 330 aaKnown RBP eCLIP18.85■□□□□ 0.61
VRK3-225ENST00000601912 FGGP02679 453 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 USP17L7P0C7H9 530 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 PYGMP11217 842 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 ATP2A2P16615 1042 aaKnown RBP18.85■□□□□ 0.61
VRK3-225ENST00000601912 GJC1P36383 396 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 CETN2P41208 172 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 MATKP42679 507 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 PTPN9P43378 593 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 DSG1Q02413 1049 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 SLC8B1Q6J4K2 584 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 TRNP1Q6NT89 227 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 POLNQ7Z5Q5 900 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 IRGQQ8WZA9 623 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 C8orf48Q96LL4 319 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 DDX56Q9NY93 547 aaKnown RBP18.85■□□□□ 0.61
VRK3-225ENST00000601912 SMARCAL1Q9NZC9 954 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 NLRC5Q86WI3 1866 aa18.85■□□□□ 0.61
VRK3-225ENST00000601912 PTPRDP23468 1912 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 C2CD2LO14523 706 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 TLL1O43897 1013 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 DAB1O75553 588 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 URODP06132 367 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 ATP11AP98196 1134 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 LONRF2Q1L5Z9 754 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 TEX35Q5T0J7 233 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 PM20D1Q6GTS8 502 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 RSPO2Q6UXX9 243 aaPredicted RBP18.84■□□□□ 0.61
VRK3-225ENST00000601912 RCOR2Q8IZ40 523 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 ATAD1Q8NBU5 361 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 EXD1Q8NHP7 514 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 NDRG1Q92597 394 aaKnown RBP18.84■□□□□ 0.61
VRK3-225ENST00000601912 DDX23Q9BUQ8 820 aaKnown RBP18.84■□□□□ 0.61
VRK3-225ENST00000601912 TRIM62Q9BVG3 475 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 POPDC2Q9HBU9 364 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 STAP1Q9ULZ2 295 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 PTPRSQ13332 1948 aa18.84■□□□□ 0.61
VRK3-225ENST00000601912 MTMR11A4FU01 709 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 CAPN9O14815 690 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 MIPP30301 263 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 NOS2P35228 1153 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 SLC5A3P53794 718 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 SMC1AQ14683 1233 aaKnown RBP18.83■□□□□ 0.61
VRK3-225ENST00000601912 CDO1Q16878 200 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 C15orf59Q2T9L4 293 aaPredicted RBP18.83■□□□□ 0.61
VRK3-225ENST00000601912 RNF19BQ6ZMZ0 732 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 RSRC2Q7L4I2 434 aaKnown RBP18.83■□□□□ 0.61
VRK3-225ENST00000601912 CCDC50Q8IVM0 306 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 DEFB106AQ8N104 65 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 VPS52Q8N1B4 723 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 ARFGAP1Q8N6T3 406 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 FAM172AQ8WUF8 416 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 CLP1Q92989 425 aaKnown RBP18.83■□□□□ 0.61
VRK3-225ENST00000601912 ABHD8Q96I13 439 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 RBM41Q96IZ5 413 aaKnown RBP18.83■□□□□ 0.61
VRK3-225ENST00000601912 NGRNQ9NPE2 291 aaKnown RBP18.83■□□□□ 0.61
VRK3-225ENST00000601912 USP18Q9UMW8 372 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 USP3Q9Y6I4 520 aa18.83■□□□□ 0.61
VRK3-225ENST00000601912 KRIT1O00522 736 aa18.82■□□□□ 0.6
VRK3-225ENST00000601912 PRPSAP2O60256 369 aa18.82■□□□□ 0.6
VRK3-225ENST00000601912 TCF4P15884 667 aa18.82■□□□□ 0.6
VRK3-225ENST00000601912 OR1D2P34982 312 aa18.82■□□□□ 0.6
VRK3-225ENST00000601912 SLC25A11Q02978 314 aaKnown RBP18.82■□□□□ 0.6
VRK3-225ENST00000601912 C2orf54Q08AI8 447 aa18.82■□□□□ 0.6
VRK3-225ENST00000601912 MGAT5BQ3V5L5 792 aa18.82■□□□□ 0.6
VRK3-225ENST00000601912 DCAF6Q58WW2 860 aa18.82■□□□□ 0.6
VRK3-225ENST00000601912 NUP93Q8N1F7 819 aa18.82■□□□□ 0.6
VRK3-225ENST00000601912 SLC2A13Q96QE2 648 aa18.82■□□□□ 0.6
VRK3-225ENST00000601912 ZWILCHQ9H900 591 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms