RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SALL1Q9NSC2 1324 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 ADH1AP07327 375 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 IL1R1P14778 569 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 TBX4P57082 545 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 CDC16Q13042 620 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 FNDC3BQ53EP0 1204 aaKnown RBP21.16■□□□□ 0.98
UPF1-207ENST00000599848 SH3GL1Q99961 368 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.16■□□□□ 0.987e-7■■■■□ 21.4
UPF1-207ENST00000599848 SAE1Q9UBE0 346 aaPredicted RBP21.16■□□□□ 0.98
UPF1-207ENST00000599848 RWDD3Q9Y3V2 267 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 RPTORQ8N122 1335 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 C1QTNF3-AMACRE9PGA6 284 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 H3BMM5 538 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 RRM2P31350 389 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 CATSPER3Q86XQ3 398 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 BSNDQ8WZ55 320 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 VPS33AQ96AX1 596 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 LRRC40Q9H9A6 602 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 CYP39A1Q9NYL5 469 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 GAKO14976 1311 aa21.16■□□□□ 0.98
UPF1-207ENST00000599848 RBP1P09455 135 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 SLC9A1P19634 815 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 PTPN7P35236 360 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 ERVK-9P63128 1117 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 ERVK-24P63145 666 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 REPS2Q8NFH8 660 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 CASP10Q92851 521 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 NEK6Q9HC98 313 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 SCN3BQ9NY72 215 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 TMCC3Q9ULS5 477 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 GMNCA6NCL1 334 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 UQCRBP14927 111 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 ANKMY2Q8IV38 441 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 PNKPQ96T60 521 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 AURKCQ9UQB9 309 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 NFASCO94856 1347 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 SETBP1Q9Y6X0 1596 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 MGAT4DA6NG13 374 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 TCEA2Q15560 299 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 CCNG2Q16589 344 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 PTK7Q13308 1070 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 CEP68Q76N32 757 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 CDK20Q8IZL9 346 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 IGFLR1Q9H665 355 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 POLLQ9UGP5 575 aa21.15■□□□□ 0.98
UPF1-207ENST00000599848 MAGEB16A2A368 324 aa21.14■□□□□ 0.98
UPF1-207ENST00000599848 ACOT1Q86TX2 421 aa21.14■□□□□ 0.98
UPF1-207ENST00000599848 RFWD2Q8NHY2 731 aa21.14■□□□□ 0.98
UPF1-207ENST00000599848 ACER1Q8TDN7 264 aa21.14■□□□□ 0.98
UPF1-207ENST00000599848 GLIS2Q9BZE0 524 aaPredicted RBP21.14■□□□□ 0.98
UPF1-207ENST00000599848 CD2BP2O95400 341 aaKnown RBP21.14■□□□□ 0.98
UPF1-207ENST00000599848 TGM2P21980 687 aa21.14■□□□□ 0.98
UPF1-207ENST00000599848 LRIG3Q6UXM1 1119 aa21.14■□□□□ 0.98
UPF1-207ENST00000599848 NECAB2Q7Z6G3 386 aa21.14■□□□□ 0.98
UPF1-207ENST00000599848 CLEC10AQ8IUN9 316 aa21.14■□□□□ 0.98
UPF1-207ENST00000599848 DNAJC1Q96KC8 554 aaKnown RBP21.14■□□□□ 0.98
UPF1-207ENST00000599848 OSMRQ99650 979 aa21.14■□□□□ 0.98
UPF1-207ENST00000599848 VTNP04004 478 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 MYBL2P10244 700 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 INSRRP14616 1297 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 ITGB6P18564 788 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 CHI3L1P36222 383 aaPredicted RBP21.14■□□□□ 0.97
UPF1-207ENST00000599848 ATP6V1G3Q96LB4 118 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 PANX3Q96QZ0 392 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 TBCBQ99426 244 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 SH2D3AQ9BRG2 576 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 SEZ6LQ9BYH1 1024 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 DDX43Q9NXZ2 648 aaKnown RBP21.14■□□□□ 0.97
UPF1-207ENST00000599848 TRAV19A0A0A6YYK7 116 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 PYGMP11217 842 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 CNTFP26441 200 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 PRMT2P55345 433 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 CAMKK1Q8N5S9 505 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 LENG9Q96B70 501 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 SERPINB12Q96P63 405 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 OLFM3Q96PB7 478 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 PRKD2Q9BZL6 878 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 ADGRA2Q96PE1 1338 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 MYO1GB0I1T2 1018 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 FYNP06241 537 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 MCL1Q07820 350 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 APBB2Q92870 758 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 KCNB2Q92953 911 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 OSBPL6Q9BZF3 934 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 SENP6Q9GZR1 1112 aaPredicted RBP21.14■□□□□ 0.97
UPF1-207ENST00000599848 ASCC2Q9H1I8 757 aaPredicted RBP21.14■□□□□ 0.97
UPF1-207ENST00000599848 FBXO28Q9NVF7 368 aa21.14■□□□□ 0.97
UPF1-207ENST00000599848 CBX4O00257 560 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 RAMP2O60895 175 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 SEC31AO94979 1220 aaKnown RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 CHGBP05060 677 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 OR56A5P0C7T3 313 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 DAB2P98082 770 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 STX5Q13190 355 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 ATAD3BQ5T9A4 648 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 C1orf131Q8NDD1 294 aaKnown RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 SYTL5Q8TDW5 730 aaPredicted RBP21.13■□□□□ 0.97
UPF1-207ENST00000599848 QRFPRQ96P65 431 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 TSPAN18Q96SJ8 248 aa21.13■□□□□ 0.97
UPF1-207ENST00000599848 CCDC85CA6NKD9 419 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms