RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 RNF38Q9H0F5 515 aa14.62□□□□□ -0.07
UPF1-205ENST00000598209 FANCLQ9NW38 375 aa14.62□□□□□ -0.07
UPF1-205ENST00000598209 TAB2Q9NYJ8 693 aa14.62□□□□□ -0.07
UPF1-205ENST00000598209 HESX1Q9UBX0 185 aa14.62□□□□□ -0.07
UPF1-205ENST00000598209 APEX2Q9UBZ4 518 aa14.62□□□□□ -0.07
UPF1-205ENST00000598209 ARHGAP26Q9UNA1 814 aa14.62□□□□□ -0.07
UPF1-205ENST00000598209 CNTN6Q9UQ52 1028 aa14.62□□□□□ -0.07
UPF1-205ENST00000598209 SCML2Q9UQR0 700 aa14.62□□□□□ -0.07
UPF1-205ENST00000598209 F5P12259 2224 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 CYP26A1O43174 497 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 PI15O43692 258 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 OLFM2O95897 454 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 CALCAP01258 141 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 KRT5P13647 590 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 TCF3P15923 654 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 AOC1P19801 751 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 BRD2P25440 801 aaKnown RBP14.61□□□□□ -0.07
UPF1-205ENST00000598209 PGFP49763 221 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 SLC7A9P82251 487 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 MYL5Q02045 173 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 PDE4CQ08493 712 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 BST2Q10589 180 aaKnown RBP14.61□□□□□ -0.07
UPF1-205ENST00000598209 MTF1Q14872 753 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 ZNF77Q15935 545 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 ARHGAP44Q17R89 818 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 KLHL40Q2TBA0 621 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 HECTD3Q5T447 861 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 CC2D1AQ6P1N0 951 aaPredicted RBP14.61□□□□□ -0.07
UPF1-205ENST00000598209 LCLAT1Q6UWP7 414 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 PIGZQ86VD9 579 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 UBA3Q8TBC4 463 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 SH3RF2Q8TEC5 729 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 DDX23Q9BUQ8 820 aaKnown RBP14.61□□□□□ -0.07
UPF1-205ENST00000598209 UBXN6Q9BZV1 441 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 FOXQ1Q9C009 403 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 CCSER2Q9H7U1 834 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 SIX2Q9NPC8 291 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 TLR8Q9NR97 1041 aaKnown RBP14.61□□□□□ -0.07
UPF1-205ENST00000598209 GKN1Q9NS71 199 aa14.61□□□□□ -0.07
UPF1-205ENST00000598209 KANSL1LA0AUZ9 987 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 TULP2O00295 520 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 XPO1O14980 1071 aaKnown RBP14.6□□□□□ -0.07
UPF1-205ENST00000598209 COCHO43405 550 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 MBL2P11226 248 aaPredicted RBP14.6□□□□□ -0.07
UPF1-205ENST00000598209 PTMSP20962 102 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 CD72P21854 359 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 TUBP50607 506 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 KPNA1P52294 538 aaPredicted RBP14.6□□□□□ -0.07
UPF1-205ENST00000598209 ZXDBP98169 803 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 TNK2Q07912 1038 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 KRT31Q15323 416 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 STILQ15468 1287 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 CNGA2Q16280 664 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 ANO6Q4KMQ2 910 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 CCDC186Q7Z3E2 898 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 FAM83CQ9BQN1 747 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 ZSWIM1Q9BR11 485 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 VPS16Q9H269 839 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 SMPD4Q9NXE4 827 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 GTSE1Q9NYZ3 720 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.6□□□□□ -0.07
UPF1-205ENST00000598209 SIT1Q9Y3P8 196 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 CPQQ9Y646 472 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 USP3Q9Y6I4 520 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 PIAS3Q9Y6X2 628 aa14.6□□□□□ -0.07
UPF1-205ENST00000598209 MYOFQ9NZM1 2061 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 A0A1W2PQH9 124 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 SHISA7A6NL88 538 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 M0QYV0 167 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 LEFTY2O00292 366 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 MAN2B1O00754 1011 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 TLR5O60602 858 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 TPM2P07951 284 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 SETSIPP0DME0 302 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 GLULP15104 373 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 KCNMA1Q12791 1236 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 UBXN2BQ14CS0 331 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 NCAPHQ15003 741 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 PKDCCQ504Y2 493 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 RAB41Q5JT25 222 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 TRIM68Q6AZZ1 485 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 ZNF852Q6ZMS4 543 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 AOPEPQ8N6M6 819 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 PJA1Q8NG27 643 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 TTC8Q8TAM2 541 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 SHC3Q92529 594 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 NACA2Q9H009 215 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 NAT10Q9H0A0 1025 aaKnown RBP14.59□□□□□ -0.07
UPF1-205ENST00000598209 EBF3Q9H4W6 596 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 C8orf33Q9H7E9 229 aaPredicted RBP14.59□□□□□ -0.07
UPF1-205ENST00000598209 NMUR1Q9HB89 426 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 LTB4R2Q9NPC1 389 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 HPS4Q9NQG7 708 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 OSER1Q9NX31 292 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 DUS2Q9NX74 493 aaKnown RBP14.59□□□□□ -0.07
UPF1-205ENST00000598209 DNAJC12Q9UKB3 198 aa14.59□□□□□ -0.07
UPF1-205ENST00000598209 AJAP1Q9UKB5 411 aaPredicted RBP14.59□□□□□ -0.07
UPF1-205ENST00000598209 MTF2Q9Y483 593 aaPredicted RBP14.59□□□□□ -0.07
UPF1-205ENST00000598209 FAM170BA6NMN3 283 aa14.58□□□□□ -0.08
UPF1-205ENST00000598209 BECN2A8MW95 431 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms