RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 DNAI2Q9GZS0 605 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 CLSTN2Q9H4D0 955 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 HPS4Q9NQG7 708 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 CISHQ9NSE2 258 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 IL37Q9NZH6 218 aa16■□□□□ 0.15
TRIM28-205ENST00000595028 FAM92AA1XBS5 289 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 BEST1O76090 585 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 OAS1P00973 400 aaKnown RBP15.99■□□□□ 0.15
TRIM28-205ENST00000595028 HDCP19113 662 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 MAP3K7CLP57077 242 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 FZD5Q13467 585 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 CUL2Q13617 745 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 ITPRIPL2Q3MIP1 535 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 CC2D1AQ6P1N0 951 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-205ENST00000595028 ZC3H14Q6PJT7 736 aaKnown RBP15.99■□□□□ 0.15
TRIM28-205ENST00000595028 TXNDC11Q6PKC3 985 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 CLEC20AQ6ZU45 233 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 RALGPS2Q86X27 583 aaPredicted RBP15.99■□□□□ 0.15
TRIM28-205ENST00000595028 C1orf210Q8IVY1 113 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 SCAMP5Q8TAC9 235 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 TTC8Q8TAM2 541 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 SH3RF2Q8TEC5 729 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 TATDN2Q93075 761 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 GKN1Q9NS71 199 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 COMMD8Q9NX08 183 aa15.99■□□□□ 0.15
TRIM28-205ENST00000595028 PMM2O15305 246 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 GNA14O95837 355 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 SP9P0CG40 484 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 MARSP56192 900 aaKnown RBP15.98■□□□□ 0.15
TRIM28-205ENST00000595028 SLC7A9P82251 487 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 PDGFRLQ15198 375 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 ZNF394Q53GI3 561 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 TRIM68Q6AZZ1 485 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 SLC4A11Q8NBS3 891 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 OSCP1Q8WVF1 389 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 CYFIP2Q96F07 1278 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 CHRDQ9H2X0 955 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 EBF3Q9H4W6 596 aa15.98■□□□□ 0.15
TRIM28-205ENST00000595028 SPATA6Q9NWH7 488 aaPredicted RBP15.98■□□□□ 0.15
TRIM28-205ENST00000595028 ABL1P00519 1130 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 ZDHHC11BP0C7U3 371 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 ARSAP15289 507 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 ATXN1P54253 815 aaKnown RBP15.97■□□□□ 0.15
TRIM28-205ENST00000595028 RAD23BP54727 409 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 RUNX3Q13761 415 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 GPRIN1Q7Z2K8 1008 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 TRIM59Q8IWR1 403 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 UBR7Q8N806 425 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 SUMF1Q8NBK3 374 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 TTC16Q8NEE8 873 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 JAKMIP2Q96AA8 810 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 IER2Q9BTL4 223 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 FBXO44Q9H4M3 255 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 PNPLA8Q9NP80 782 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 DUS2Q9NX74 493 aaKnown RBP15.97■□□□□ 0.15
TRIM28-205ENST00000595028 GMIPQ9P107 970 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 RWDD2AQ9UIY3 292 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 WNT6Q9Y6F9 365 aa15.97■□□□□ 0.15
TRIM28-205ENST00000595028 OTOL1A6NHN0 477 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-205ENST00000595028 HHLA1C9JL84 531 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 LEFTY2O00292 366 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 P4HA2O15460 535 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 CHRNB1P11230 501 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 TBXAS1P24557 533 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-205ENST00000595028 IFNAR2P48551 515 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 TUBP50607 506 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 YWHAEP62258 255 aaKnown RBP15.96■□□□□ 0.15
TRIM28-205ENST00000595028 ZXDBP98169 803 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 LRMPQ12912 555 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 LRRC32Q14392 662 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 PPP1R26Q5T8A7 1209 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-205ENST00000595028 SNX30Q5VWJ9 437 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 ARHGAP17Q68EM7 881 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 MAML2Q8IZL2 1156 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-205ENST00000595028 CPA6Q8N4T0 437 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 CHFRQ96EP1 664 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 TMEM176AQ96HP8 235 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 NT5C1BQ96P26 610 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 SRRTQ9BXP5 876 aaKnown RBP15.96■□□□□ 0.15
TRIM28-205ENST00000595028 DUSP16Q9BY84 665 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 RNF38Q9H0F5 515 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 NUP62CLQ9H1M0 184 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 CPQQ9Y646 472 aa15.96■□□□□ 0.15
TRIM28-205ENST00000595028 COCHO43405 550 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 LAMTOR5O43504 91 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 FGFR1OPO95684 399 aaKnown RBP15.95■□□□□ 0.14
TRIM28-205ENST00000595028 CCDC192P0DO97 292 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 MBL2P11226 248 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-205ENST00000595028 CETN1Q12798 172 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 MTAPQ13126 283 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 PON2Q15165 354 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 EML3Q32P44 896 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 HECTD3Q5T447 861 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 DDX42Q86XP3 938 aaKnown RBP eCLIP15.95■□□□□ 0.14
TRIM28-205ENST00000595028 KIAA1958Q8N8K9 716 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 MLKLQ8NB16 471 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 ATP2A3Q93084 1043 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 HEXIM2Q96MH2 286 aaKnown RBP15.95■□□□□ 0.14
TRIM28-205ENST00000595028 MED15Q96RN5 788 aa15.95■□□□□ 0.14
TRIM28-205ENST00000595028 LMAN1LQ9HAT1 526 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms