RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PSEN1P49768 467 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 TUBP50607 506 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 PLCB2Q00722 1185 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 PRKCQQ04759 706 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 ZSCAN23Q3MJ62 389 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 RAB41Q5JT25 222 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 CC2D1AQ6P1N0 951 aaPredicted RBP15.84■□□□□ 0.13
UPF1-202ENST00000594243 HFE2Q6ZVN8 426 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 GPRIN1Q7Z2K8 1008 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 CCDC186Q7Z3E2 898 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 SUGP1Q8IWZ8 645 aaKnown RBP15.84■□□□□ 0.13
UPF1-202ENST00000594243 UBA3Q8TBC4 463 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 KCTD13Q8WZ19 329 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 SHC3Q92529 594 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 LRRC3BQ96PB8 259 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 SLC22A12Q96S37 553 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 RNF38Q9H0F5 515 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 LRRC4Q9HBW1 653 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 PLCB1Q9NQ66 1216 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 ARHGEF3Q9NR81 526 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 GMIPQ9P107 970 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 ARHGAP26Q9UNA1 814 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 CCL26Q9Y258 94 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 GREB1Q4ZG55 1949 aa15.84■□□□□ 0.13
UPF1-202ENST00000594243 MYO10Q9HD67 2058 aa15.83■□□□□ 0.13
UPF1-202ENST00000594243 KRBA1A5PL33 1030 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 OLFM2O95897 454 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 TCF3P15923 654 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 BRD2P25440 801 aaKnown RBP15.83■□□□□ 0.12
UPF1-202ENST00000594243 GNA15P30679 374 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 PLA2G4AP47712 749 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 TPM4P67936 248 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 SLC7A9P82251 487 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 PTK2Q05397 1052 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 PKDCCQ504Y2 493 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 DPY19L2P1Q6NXN4 242 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 ARHGAP18Q8N392 663 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 FBXL6Q8N531 539 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 CSGALNACT1Q8TDX6 532 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 ZNF606Q8WXB4 792 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 LSM14BQ9BX40 385 aaKnown RBP15.83■□□□□ 0.12
UPF1-202ENST00000594243 HSD3B7Q9H2F3 369 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 DAAM1Q9Y4D1 1078 aa15.83■□□□□ 0.12
UPF1-202ENST00000594243 M0QYV0 167 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 FOXN3O00409 490 aaPredicted RBP15.82■□□□□ 0.12
UPF1-202ENST00000594243 STK25O00506 426 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 THAP12O43422 761 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 MBL2P11226 248 aaPredicted RBP15.82■□□□□ 0.12
UPF1-202ENST00000594243 GLULP15104 373 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 UCHL3P15374 230 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 TKTL1P51854 596 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 MLLT6P55198 1093 aaPredicted RBP15.82■□□□□ 0.12
UPF1-202ENST00000594243 STARD6P59095 220 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 BPIFB4P59827 614 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 UBXN1Q04323 297 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 MLF2Q15773 248 aaPredicted RBP15.82■□□□□ 0.12
UPF1-202ENST00000594243 MEA1Q16626 185 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 TADA2BQ86TJ2 420 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 DDX42Q86XP3 938 aaKnown RBP eCLIP15.82■□□□□ 0.12
UPF1-202ENST00000594243 KIAA1958Q8N8K9 716 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 SLC35F5Q8WV83 523 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 PCMTD1Q96MG8 357 aaPredicted RBP15.82■□□□□ 0.12
UPF1-202ENST00000594243 ZSWIM1Q9BR11 485 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 STK33Q9BYT3 514 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 NACA2Q9H009 215 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 GKN1Q9NS71 199 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 TRIOO75962 3097 aa15.82■□□□□ 0.12
UPF1-202ENST00000594243 NUP210Q8TEM1 1887 aaPredicted RBP15.82■□□□□ 0.12
UPF1-202ENST00000594243 LGALS16A8MUM7 142 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 TULP2O00295 520 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 CYP26A1O43174 497 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 COCHO43405 550 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 OBSL1O75147 1896 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 ZBED1O96006 694 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 CALCAP01258 141 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 RALAP11233 206 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 ATP1A3P13637 1013 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 ATP5C1P36542 298 aaKnown RBP15.81■□□□□ 0.12
UPF1-202ENST00000594243 CLCN5P51795 746 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 RAPGEF1Q13905 1077 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 MTF1Q14872 753 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 DRAP1Q14919 205 aaPredicted RBP15.81■□□□□ 0.12
UPF1-202ENST00000594243 IQCB1Q15051 598 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 NFKBIBQ15653 356 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 ZNF77Q15935 545 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 FILIP1LQ4L180 1135 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 DENND4CQ5VZ89 1909 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 PM20D1Q6GTS8 502 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 ZNF276Q8N554 614 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 FLCNQ8NFG4 579 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 SH3RF2Q8TEC5 729 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 SECISBP2LQ93073 1101 aaKnown RBP15.81■□□□□ 0.12
UPF1-202ENST00000594243 HSFY1Q96LI6 401 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 CDK5RAP1Q96SZ6 601 aaKnown RBP15.81■□□□□ 0.12
UPF1-202ENST00000594243 NAA15Q9BXJ9 866 aaKnown RBP15.81■□□□□ 0.12
UPF1-202ENST00000594243 CCSER2Q9H7U1 834 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 CYLDQ9NQC7 956 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 HEBP1Q9NRV9 189 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 CLIC5Q9NZA1 410 aa15.81■□□□□ 0.12
UPF1-202ENST00000594243 NAGPAQ9UK23 515 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms