RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CFAP57Q96MR6 1250 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 SYT15Q9BQS2 421 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 MED10Q9BTT4 135 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 DDX23Q9BUQ8 820 aaKnown RBP14.84□□□□□ -0.03
LIG3-205ENST00000585941 NGRNQ9NPE2 291 aaKnown RBP14.84□□□□□ -0.03
LIG3-205ENST00000585941 RGS18Q9NS28 235 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 ANAPC5Q9UJX4 755 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 PHF24Q9UPV7 400 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 NFS1Q9Y697 457 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 KBTBD13C9JR72 458 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 ARVCFO00192 962 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 GRAP2O75791 330 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 FBXO21O94952 628 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 LCP1P13796 627 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 TKTP29401 623 aaKnown RBP14.84□□□□□ -0.03
LIG3-205ENST00000585941 C15orf59Q2T9L4 293 aaPredicted RBP14.84□□□□□ -0.03
LIG3-205ENST00000585941 MDH1BQ5I0G3 518 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 CEP85LQ5SZL2 805 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 DENND2CQ68D51 928 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 RHBDF2Q6PJF5 856 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 SLC24A5Q71RS6 500 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 STRADAQ7RTN6 431 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 PIGZQ86VD9 579 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 RFX6Q8HWS3 928 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 LPIN3Q9BQK8 851 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 FTHL17Q9BXU8 183 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 CALN1Q9BXU9 219 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 B3GNT5Q9BYG0 378 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 LRRC4Q9HBW1 653 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 PCDH9Q9HC56 1237 aa14.84□□□□□ -0.03
LIG3-205ENST00000585941 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.84□□□□□ -0.03
LIG3-205ENST00000585941 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.84□□□□□ -0.03
LIG3-205ENST00000585941 CASTOR2A6NHX0 329 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 COL6A1P12109 1028 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 VEGFBP49765 207 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 ARSEP51690 589 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 AFF1P51825 1210 aaKnown RBP14.83□□□□□ -0.04
LIG3-205ENST00000585941 ITGA8P53708 1063 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 CDH6P55285 790 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 ATP11AP98196 1134 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 IFFO1Q0D2I5 559 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 KRT81Q14533 505 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 CDO1Q16878 200 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 DCLRE1AQ6PJP8 1040 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 GLB1LQ6UWU2 654 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 CYP4V2Q6ZWL3 525 aaPredicted RBP14.83□□□□□ -0.04
LIG3-205ENST00000585941 HOOK3Q86VS8 718 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 MYCBPAPQ8TBZ2 947 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 ATP6V1G3Q96LB4 118 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 PEBP4Q96S96 227 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 ACBD6Q9BR61 282 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 C11orf84Q9BUA3 381 aaPredicted RBP14.83□□□□□ -0.04
LIG3-205ENST00000585941 OSBPL7Q9BZF2 842 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 TRPV6Q9H1D0 765 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 PRDM16Q9HAZ2 1276 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 TMBIM4Q9HC24 238 aa14.83□□□□□ -0.04
LIG3-205ENST00000585941 M0QZQ0 153 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 MCF2LO15068 1137 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 ATP2C2O75185 946 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 B3GAT3O94766 335 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 POMCP01189 267 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 ACAT1P24752 427 aaKnown RBP14.82□□□□□ -0.04
LIG3-205ENST00000585941 MATKP42679 507 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 OTUD4Q01804 1114 aaKnown RBP14.82□□□□□ -0.04
LIG3-205ENST00000585941 ZNF844Q08AG5 666 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 TAF5Q15542 800 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 MAPRE1Q15691 268 aaKnown RBP14.82□□□□□ -0.04
LIG3-205ENST00000585941 TIGD5Q53EQ6 642 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 SH3PXD2AQ5TCZ1 1133 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 SCYL2Q6P3W7 929 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 TRAF7Q6Q0C0 670 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 CLEC20AQ6ZU45 233 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 PAQR9Q6ZVX9 377 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 PCGF5Q86SE9 256 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 PSTKQ8IV42 348 aaKnown RBP14.82□□□□□ -0.04
LIG3-205ENST00000585941 SIX6OS1Q8N1H7 587 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 C3orf58Q8NDZ4 430 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 ACTL9Q8TC94 416 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.82□□□□□ -0.04
LIG3-205ENST00000585941 ZNF670Q9BS34 389 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 CRTAC1Q9NQ79 661 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 TSC2P49815 1807 aa14.82□□□□□ -0.04
LIG3-205ENST00000585941 C9IYK1 514 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 SGK1O00141 431 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 DAB1O75553 588 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 HDAC4P56524 1084 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 YWHAZP63104 245 aaKnown RBP14.81□□□□□ -0.04
LIG3-205ENST00000585941 FAM189BP81408 668 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 MRPS5P82675 430 aaKnown RBP14.81□□□□□ -0.04
LIG3-205ENST00000585941 ADIGQ0VDE8 80 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 BFSP2Q13515 415 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 DPYSL3Q14195 570 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 TRIP13Q15645 432 aaPredicted RBP14.81□□□□□ -0.04
LIG3-205ENST00000585941 SLC25A52Q3SY17 297 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 TTMPQ5BVD1 217 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 ERMARDQ5T6L9 678 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 AGBL2Q5U5Z8 902 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 EMC10Q5UCC4 262 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 IZUMO3Q5VZ72 239 aa14.81□□□□□ -0.04
LIG3-205ENST00000585941 FAM35AQ86V20 835 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms