RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PTK7Q13308 1070 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 KRT81Q14533 505 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 SLC29A2Q14542 456 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 TRIP13Q15645 432 aaPredicted RBP11.78□□□□□ -0.52
LIG3-204ENST00000585740 SMTNL2Q2TAL5 461 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 CCDC14Q49A88 953 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 CCDC25Q86WR0 208 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 ZCCHC9Q8N567 271 aaKnown RBP11.78□□□□□ -0.52
LIG3-204ENST00000585740 SH2D3CQ8N5H7 860 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 B3GALNT2Q8NCR0 500 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 ARRDC4Q8NCT1 418 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 ACTL9Q8TC94 416 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 HSPH1Q92598 858 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 TLCD1Q96CP7 247 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 ARHGAP39Q9C0H5 1083 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 TSPYL2Q9H2G4 693 aaPredicted RBP11.78□□□□□ -0.52
LIG3-204ENST00000585740 CDC42EP4Q9H3Q1 356 aaKnown RBP11.78□□□□□ -0.52
LIG3-204ENST00000585740 SEMA4AQ9H3S1 761 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 DPEP3Q9H4B8 488 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 AAASQ9NRG9 546 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 BCCIPQ9P287 314 aaKnown RBP eCLIP11.78□□□□□ -0.52
LIG3-204ENST00000585740 SHOC2Q9UQ13 582 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 NME7Q9Y5B8 376 aa11.78□□□□□ -0.52
LIG3-204ENST00000585740 CFAP69A5D8W1 941 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 ERICH4A6NGS2 130 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 SGK1O00141 431 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 RASGRF2O14827 1237 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 SPTLC1O15269 473 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 EIF3HO15372 352 aaKnown RBP eCLIP11.77□□□□□ -0.53
LIG3-204ENST00000585740 TCEA3O75764 348 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 TTC4O95801 387 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 CHRNA1P02708 482 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 ASGR1P07306 291 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 ABHD2P08910 425 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 ZFXP17010 805 aaPredicted RBP11.77□□□□□ -0.53
LIG3-204ENST00000585740 TGM2P21980 687 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 VPS41P49754 854 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 ARSEP51690 589 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 KCNA10Q16322 511 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 ZSCAN26Q16670 478 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 P3H1Q32P28 736 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 FAM26DQ5JW98 314 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 MFSD5Q6N075 450 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 STRADAQ7RTN6 431 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 RNF180Q86T96 592 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 OSTM1Q86WC4 334 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.77□□□□□ -0.53
LIG3-204ENST00000585740 FAM172AQ8WUF8 416 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 RSAD2Q8WXG1 361 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 KCTD13Q8WZ19 329 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 ACSF2Q96CM8 615 aaPredicted RBP11.77□□□□□ -0.53
LIG3-204ENST00000585740 SERPINB12Q96P63 405 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 DUSP16Q9BY84 665 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.77□□□□□ -0.53
LIG3-204ENST00000585740 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.77□□□□□ -0.53
LIG3-204ENST00000585740 NOVA2Q9UNW9 492 aaKnown RBP11.77□□□□□ -0.53
LIG3-204ENST00000585740 CEP290O15078 2479 aa11.77□□□□□ -0.53
LIG3-204ENST00000585740 GABRDO14764 452 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 TP73O15350 636 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 DAB1O75553 588 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 FBXO21O94952 628 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 CTSHP09668 335 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 PRKAR2AP13861 404 aaKnown RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 CCDC130P13994 396 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 NPR3P17342 541 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 PTPN1P18031 435 aaKnown RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 LMO2P25791 158 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 STIP1P31948 543 aaKnown RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 THPOP40225 353 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 MDH1P40925 334 aaKnown RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 EIF3EP60228 445 aaKnown RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 GPS1Q13098 491 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 DPYSL3Q14195 570 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 STAT4Q14765 748 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 NOMO1Q15155 1222 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 PTGISQ16647 500 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 C15orf59Q2T9L4 293 aaPredicted RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 DNAJC21Q5F1R6 531 aaKnown RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 KCNT1Q5JUK3 1230 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 CCSAPQ6IQ19 270 aaPredicted RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 TRNP1Q6NT89 227 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 LRRC31Q6UY01 552 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 C4orf22Q6V702 233 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 DSTYKQ6XUX3 929 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 TAOK1Q7L7X3 1001 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 PSTKQ8IV42 348 aaKnown RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 RIBC1Q8N443 379 aaPredicted RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 SLC2A14Q8TDB8 520 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 CENPIQ92674 756 aaPredicted RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 KHSRPQ92945 711 aaKnown RBP eCLIP11.76□□□□□ -0.53
LIG3-204ENST00000585740 SENP8Q96LD8 212 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 UROC1Q96N76 676 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 RNF157Q96PX1 679 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 PEBP4Q96S96 227 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 FAM118BQ9BPY3 351 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 ZNF670Q9BS34 389 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 DDX23Q9BUQ8 820 aaKnown RBP11.76□□□□□ -0.53
LIG3-204ENST00000585740 CALN1Q9BXU9 219 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 PPCSQ9HAB8 311 aa11.76□□□□□ -0.53
LIG3-204ENST00000585740 GOLGA2P5Q9HBQ8 144 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms