RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 KSR1Q8IVT5 923 aa11□□□□□ -0.65
SS18-221ENST00000582448 ZC3H3Q8IXZ2 948 aaKnown RBP11□□□□□ -0.65
SS18-221ENST00000582448 DAW1Q8N136 415 aa11□□□□□ -0.65
SS18-221ENST00000582448 NEK11Q8NG66 645 aa11□□□□□ -0.65
SS18-221ENST00000582448 PGBD4Q96DM1 585 aa11□□□□□ -0.65
SS18-221ENST00000582448 ERGIC2Q96RQ1 377 aa11□□□□□ -0.65
SS18-221ENST00000582448 VN1R3Q9BXE9 311 aa11□□□□□ -0.65
SS18-221ENST00000582448 INO80BQ9C086 356 aaPredicted RBP11□□□□□ -0.65
SS18-221ENST00000582448 POLD4Q9HCU8 107 aa11□□□□□ -0.65
SS18-221ENST00000582448 MAN1C1Q9NR34 630 aa11□□□□□ -0.65
SS18-221ENST00000582448 MRPL17Q9NRX2 175 aaKnown RBP11□□□□□ -0.65
SS18-221ENST00000582448 IGSF9Q9P2J2 1179 aa11□□□□□ -0.65
SS18-221ENST00000582448 SUCLA2Q9P2R7 463 aaPredicted RBP11□□□□□ -0.65
SS18-221ENST00000582448 PYCARDQ9ULZ3 195 aa11□□□□□ -0.65
SS18-221ENST00000582448 RIF1Q5UIP0 2472 aaKnown RBP10.99□□□□□ -0.65
SS18-221ENST00000582448 NRP1O14786 923 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 INPPL1O15357 1258 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 B4GALT3O60512 393 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 EXOC3O60645 756 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 N4BP1O75113 896 aaKnown RBP10.99□□□□□ -0.65
SS18-221ENST00000582448 KRT13P13646 458 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 RAB6AP20340 208 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 NCKAP1LP55160 1127 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 ADKP55263 362 aaKnown RBP10.99□□□□□ -0.65
SS18-221ENST00000582448 CCZ1BP86790 482 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 CCZ1P86791 482 aaPredicted RBP10.99□□□□□ -0.65
SS18-221ENST00000582448 GTF2BQ00403 316 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 CDC42EP1Q00587 391 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 STRN3Q13033 797 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 EMC2Q15006 297 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 SYCP1Q15431 976 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 FIGNQ5HY92 759 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 ALG1LQ6GMV1 187 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.99□□□□□ -0.65
SS18-221ENST00000582448 TAS1R1Q7RTX1 841 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 USP37Q86T82 979 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 FAM186BQ8IYM0 893 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 SLC44A3Q8N4M1 653 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 DCLK2Q8N568 766 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 TCP11Q8WWU5 503 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 POLR3FQ9H1D9 316 aaPredicted RBP10.99□□□□□ -0.65
SS18-221ENST00000582448 MMRN2Q9H8L6 949 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 TBC1D17Q9HA65 648 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 PIDD1Q9HB75 910 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 RRAGDQ9NQL2 400 aaPredicted RBP10.99□□□□□ -0.65
SS18-221ENST00000582448 AGPAT3Q9NRZ7 376 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 WNT16Q9UBV4 365 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 PRG3Q9Y2Y8 225 aaPredicted RBP10.99□□□□□ -0.65
SS18-221ENST00000582448 PCDHB2Q9Y5E7 798 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 FAM186AA6NE01 2351 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 PHLPP2Q6ZVD8 1323 aa10.99□□□□□ -0.65
SS18-221ENST00000582448 A0A1W2PQJ5 194 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 GOLGA6L9A6NEM1 432 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 KIF2AO00139 706 aaPredicted RBP10.98□□□□□ -0.65
SS18-221ENST00000582448 CLIC2O15247 247 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 SLC16A4O15374 487 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 TMPRSS2O15393 492 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 RFPL2O75678 378 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 AFPP02771 609 aaKnown RBP10.98□□□□□ -0.65
SS18-221ENST00000582448 GYPCP04921 128 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 URODP06132 367 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 NFICP08651 508 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 ADMP35318 185 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 KRT9P35527 623 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 OR1G1P47890 313 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 NPTX2P47972 431 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 CETN1Q12798 172 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 TARBP2Q15633 366 aaKnown RBP10.98□□□□□ -0.65
SS18-221ENST00000582448 DCAF17Q5H9S7 520 aaPredicted RBP10.98□□□□□ -0.65
SS18-221ENST00000582448 MIIPQ5JXC2 388 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 TCERG1LQ5VWI1 586 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 PAOXQ6QHF9 649 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 CYP26C1Q6V0L0 522 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 AGMOQ6ZNB7 445 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 C15orf39Q6ZRI6 1047 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 CACNA2D4Q7Z3S7 1137 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 PALB2Q86YC2 1186 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 TMTC1Q8IUR5 882 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 TRIM59Q8IWR1 403 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 TC2NQ8N9U0 490 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 OR8K1Q8NGG5 319 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 DEPTORQ8TB45 409 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 SMG7Q92540 1137 aaKnown RBP10.98□□□□□ -0.65
SS18-221ENST00000582448 BICD1Q96G01 975 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 MYADMQ96S97 322 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 NTPCRQ9BSD7 190 aaKnown RBP10.98□□□□□ -0.65
SS18-221ENST00000582448 EDEM3Q9BZQ6 932 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 SEMA4AQ9H3S1 761 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 ACSS3Q9H6R3 686 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 RSAD1Q9HA92 442 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 GPRC5CQ9NQ84 441 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 SPTLC3Q9NUV7 552 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 PCMTD2Q9NV79 361 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 CAPN11Q9UMQ6 739 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 TBX20Q9UMR3 447 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 SIT1Q9Y3P8 196 aa10.98□□□□□ -0.65
SS18-221ENST00000582448 MYH9P35579 1960 aaKnown RBP10.97□□□□□ -0.65
SS18-221ENST00000582448 TEX28O15482 410 aa10.97□□□□□ -0.65
SS18-221ENST00000582448 TGFB1I1O43294 461 aa10.97□□□□□ -0.65
SS18-221ENST00000582448 ZNF623O75123 536 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms