RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 DDX43Q9NXZ2 648 aaKnown RBP9.74□□□□□ -0.85
SS18-220ENST00000582092 TRIP11Q15643 1979 aa9.74□□□□□ -0.85
SS18-220ENST00000582092 SZT2Q5T011 3432 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 GOLGA6L10A6NI86 522 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 SPTLC1O15269 473 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 HOXA2O43364 376 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 RB1P06400 928 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 FAM200BP0CF97 657 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 RARAP10276 462 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 RALAP11233 206 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 LMO2P25791 158 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 CARSP49589 748 aaKnown RBP9.73□□□□□ -0.85
SS18-220ENST00000582092 ZNF143P52747 638 aaPredicted RBP9.73□□□□□ -0.85
SS18-220ENST00000582092 TAS2R40P59535 323 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 TSPY1Q01534 308 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 MTMR3Q13615 1198 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 BTG3Q14201 252 aaPredicted RBP9.73□□□□□ -0.85
SS18-220ENST00000582092 LLGL1Q15334 1064 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 MAPRE1Q15691 268 aaKnown RBP9.73□□□□□ -0.85
SS18-220ENST00000582092 CCDC85BQ15834 202 aaPredicted RBP9.73□□□□□ -0.85
SS18-220ENST00000582092 AAK1Q2M2I8 961 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 TFDP3Q5H9I0 405 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 MDH1BQ5I0G3 518 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 CFAP58Q5T655 872 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 ALS2CLQ60I27 953 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 FAM183BPQ6ZVS7 135 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 POLNQ7Z5Q5 900 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 JAMLQ86YT9 394 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 RFX6Q8HWS3 928 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 EMC1Q8N766 993 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 TTC13Q8NBP0 860 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 BBOF1Q8ND07 529 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 SPATA18Q8TC71 538 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 SLC2A14Q8TDB8 520 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 SP7Q8TDD2 431 aaPredicted RBP9.73□□□□□ -0.85
SS18-220ENST00000582092 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.73□□□□□ -0.85
SS18-220ENST00000582092 RXFP2Q8WXD0 754 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 CASKIN2Q8WXE0 1202 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 HSPH1Q92598 858 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 GDAP1L1Q96MZ0 367 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 HNRNPABQ99729 332 aaKnown RBP9.73□□□□□ -0.85
SS18-220ENST00000582092 SYT15Q9BQS2 421 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 ERP44Q9BS26 406 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 SLC4A5Q9BY07 1137 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 DUSP16Q9BY84 665 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 DPEP3Q9H4B8 488 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 PCSK1NQ9UHG2 260 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 PCYOX1Q9UHG3 505 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 CYTH4Q9UIA0 394 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 CDH9Q9ULB4 789 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 COL4A6Q14031 1691 aa9.73□□□□□ -0.85
SS18-220ENST00000582092 FNDC1Q4ZHG4 1894 aaPredicted RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 COL4A4P53420 1690 aaPredicted RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 ESYT3A0FGR9 886 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 LCHNA4D1U4 455 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 GOLGA6BA6NDN3 693 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 PI4K2BG5E9Z4 385 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 CAPN9O14815 690 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 XPO1O14980 1071 aaKnown RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 DAPK3O43293 454 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 MGEA5O60502 916 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 GRAP2O75791 330 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 ACAT1P24752 427 aaKnown RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 CCNG2Q16589 344 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 CYP1B1Q16678 543 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 CDO1Q16878 200 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 BOLA3Q53S33 107 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 NOMO2Q5JPE7 1267 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 PPP1R15BQ5SWA1 713 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 PMF1Q6P1K2 205 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 SPOCD1Q6ZMY3 1216 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 CEP128Q6ZU80 1094 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 TMEM110Q86TL2 294 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 TTC30AQ86WT1 665 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 CPNE8Q86YQ8 564 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 SCUBE3Q8IX30 993 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 GSPT2Q8IYD1 628 aaKnown RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 CMTR2Q8IYT2 770 aaKnown RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 PRELID2Q8N945 189 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 JOSD2Q8TAC2 188 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 CCHCR1Q8TD31 782 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 AENQ8WTP8 325 aaKnown RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 SLC35F5Q8WV83 523 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 KBTBD7Q8WVZ9 684 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 C1orf54Q8WWF1 131 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 CAVIN3Q969G5 261 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 FAM149B1Q96BN6 582 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 SLITRK1Q96PX8 696 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 C11orf84Q9BUA3 381 aaPredicted RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 CALN1Q9BXU9 219 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 FRMD8P1Q9BZ68 369 aaPredicted RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 FAM129AQ9BZQ8 928 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 TSPYL1Q9H0U9 437 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 LRRC19Q9H756 370 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 NGRNQ9NPE2 291 aaKnown RBP9.72□□□□□ -0.85
SS18-220ENST00000582092 AAASQ9NRG9 546 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 KLHL11Q9NVR0 708 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 MIOSQ9NXC5 875 aa9.72□□□□□ -0.85
SS18-220ENST00000582092 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.72□□□□□ -0.85
SS18-220ENST00000582092 THEGQ9P2T0 379 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms