RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 COMMD8Q9NX08 183 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 DLGAP2Q9P1A6 1054 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 PIAS3Q9Y6X2 628 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 MYO16Q9Y6X6 1858 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 KANSL1LA0AUZ9 987 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 COCHO43405 550 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 DCNP07585 359 aaKnown RBP21.24■□□□□ 0.99
SS18-218ENST00000581021 ARSAP15289 507 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 BRD2P25440 801 aaKnown RBP21.24■□□□□ 0.99
SS18-218ENST00000581021 TARSP26639 723 aaKnown RBP21.24■□□□□ 0.99
SS18-218ENST00000581021 KIF11P52732 1056 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 SLC7A9P82251 487 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 MTF1Q14872 753 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 STX1AQ16623 288 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 VWA3BQ502W6 1294 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 PKDCCQ504Y2 493 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 SGO2Q562F6 1265 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 PIGZQ86VD9 579 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 FAM114A1Q8IWE2 563 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 TTC16Q8NEE8 873 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 PDZD8Q8NEN9 1154 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 TUBGCP2Q9BSJ2 902 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 NDST4Q9H3R1 872 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 LTB4R2Q9NPC1 389 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 UBE2TQ9NPD8 197 aaPredicted RBP21.24■□□□□ 0.99
SS18-218ENST00000581021 GKN1Q9NS71 199 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 SMPD4Q9NXE4 827 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 CNTN6Q9UQ52 1028 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 SCML2Q9UQR0 700 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 USP3Q9Y6I4 520 aa21.24■□□□□ 0.99
SS18-218ENST00000581021 CACNA1HO95180 2353 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 GTPBP10A4D1E9 387 aaKnown RBP21.23■□□□□ 0.99
SS18-218ENST00000581021 STK25O00506 426 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 SCAMP3O14828 347 aaKnown RBP21.23■□□□□ 0.99
SS18-218ENST00000581021 PAEPP09466 180 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 VDRP11473 427 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 PRKCSHP14314 528 aaPredicted RBP21.23■□□□□ 0.99
SS18-218ENST00000581021 PFKLP17858 780 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 PDE4CQ08493 712 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 TCF15Q12870 199 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 EXOC3L4Q17RC7 722 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 TCP11X2Q5H9J9 407 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 CAVIN1Q6NZI2 390 aaKnown RBP21.23■□□□□ 0.99
SS18-218ENST00000581021 TXNDC11Q6PKC3 985 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 SASS6Q6UVJ0 657 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 GBP6Q6ZN66 633 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 SCD5Q86SK9 330 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 UBA3Q8TBC4 463 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 SHDQ96IW2 340 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 HSD3B7Q9H2F3 369 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 FBXO44Q9H4M3 255 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 ACP6Q9NPH0 428 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 ANO10Q9NW15 660 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 CPQQ9Y646 472 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 WNT6Q9Y6F9 365 aa21.23■□□□□ 0.99
SS18-218ENST00000581021 BECN2A8MW95 431 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 LEFTY2O00292 366 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 GABBR2O75899 941 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 TCF3P15923 654 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 TYRO3Q06418 890 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 FZD5Q13467 585 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 UBXN2BQ14CS0 331 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 RAB41Q5JT25 222 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 LCLAT1Q6UWP7 414 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 WBP2Q969T9 261 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 DNAI2Q9GZS0 605 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 EBF3Q9H4W6 596 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 FANCLQ9NW38 375 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 TAB2Q9NYJ8 693 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 APEX2Q9UBZ4 518 aa21.22■□□□□ 0.99
SS18-218ENST00000581021 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.22■□□□□ 0.99
SS18-218ENST00000581021 A0A1W2PQH9 124 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 TBX18O95935 607 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 RFX1P22670 979 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 EEF1GP26641 437 aaKnown RBP21.21■□□□□ 0.99
SS18-218ENST00000581021 TUBP50607 506 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 BCAT1P54687 386 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 PLCB2Q00722 1185 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 KCNMA1Q12791 1236 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 NCAPHQ15003 741 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 HECTD3Q5T447 861 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 BHLHA9Q7RTU4 235 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 CCDC186Q7Z3E2 898 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 CSGALNACT1Q8TDX6 532 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 THG1LQ9NWX6 298 aaKnown RBP21.21■□□□□ 0.99
SS18-218ENST00000581021 SIT1Q9Y3P8 196 aa21.21■□□□□ 0.99
SS18-218ENST00000581021 FAM170BA6NMN3 283 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 XPO1O14980 1071 aaKnown RBP21.2■□□□□ 0.98
SS18-218ENST00000581021 TLR5O60602 858 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 MBL2P11226 248 aaPredicted RBP21.2■□□□□ 0.98
SS18-218ENST00000581021 KRT5P13647 590 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 CTHP32929 405 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 PDE6CP51160 858 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 BST2Q10589 180 aaKnown RBP21.2■□□□□ 0.98
SS18-218ENST00000581021 KRT31Q15323 416 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 EML3Q32P44 896 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 NAIF1Q69YI7 327 aaPredicted RBP21.2■□□□□ 0.98
SS18-218ENST00000581021 ZNF852Q6ZMS4 543 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 OSCP1Q8WVF1 389 aa21.2■□□□□ 0.98
SS18-218ENST00000581021 NDRG1Q92597 394 aaKnown RBP21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms